CmoCh15G006130 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G006130
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr15: 2985673 .. 2985963 (-)
RNA-Seq ExpressionCmoCh15G006130
SyntenyCmoCh15G006130
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTATTCGACGGCCAATCTAATGTTTGGTATTTTGGTAGCATCCATCGCTCTAAGGCTGCCGTTGGAAGCCAGGGCAAGCGCCATGGTTGGCCCTTCTCCTCTGCCACCGCCGACATGCCATTCACCTTCTGGGCAGCTATTATTTCGCCGCCCCATAAAGGTTAGCCTTACAGTGAAGGCTAGTGGAGAAGATGAAGCTGAAGCACCATCGTCCAAGGATGAAAAGGGTGGCAGAAAACCATGGCCAAAGCAACCTGTCCCTAAAGCGCCACCACCTCCATTTTAG

mRNA sequence

ATGGGGTATTCGACGGCCAATCTAATGTTTGCATCCATCGCTCTAAGGCTGCCGTTGGAAGCCAGGGCAAGCGCCATGGTTGGCCCTTCTCCTCTGCCACCGCCGACATGCCATTCACCTTCTGGGCAGCTATTATTTCGCCGCCCCATAAAGGTTAGCCTTACAGTGAAGGCTAGTGGAGAAGATGAAGCTGAAGCACCATCGTCCAAGGATGAAAAGGGTGGCAGAAAACCATGGCCAAAGCAACCTGTCCCTAAAGCGCCACCACCTCCATTTTAG

Coding sequence (CDS)

ATGGGGTATTCGACGGCCAATCTAATGTTTGCATCCATCGCTCTAAGGCTGCCGTTGGAAGCCAGGGCAAGCGCCATGGTTGGCCCTTCTCCTCTGCCACCGCCGACATGCCATTCACCTTCTGGGCAGCTATTATTTCGCCGCCCCATAAAGGTTAGCCTTACAGTGAAGGCTAGTGGAGAAGATGAAGCTGAAGCACCATCGTCCAAGGATGAAAAGGGTGGCAGAAAACCATGGCCAAAGCAACCTGTCCCTAAAGCGCCACCACCTCCATTTTAG

Protein sequence

MGYSTANLMFASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLTVKASGEDEAEAPSSKDEKGGRKPWPKQPVPKAPPPPF
Homology
BLAST of CmoCh15G006130 vs. ExPASy TrEMBL
Match: A0A0A0K9K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058720 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.2e-08
Identity = 49/102 (48.04%), Postives = 61/102 (59.80%), Query Frame = 0

Query: 1  MGYSTANLMF-----ASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLT 60
          MG STAN++      ASIALRLP E  A A+  P PL  P        L++   +KV L 
Sbjct: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRL------LIYNTVMKVRLN 60

Query: 61 VKA-----SGEDEAEAPSSKDEKGGRKPWPKQPVPKAPPPPF 93
           +A     SG+DE++ P  K+EKG RKPWPK PV K+PPPPF
Sbjct: 61 DEAGSGEGSGDDESD-PPLKEEKGSRKPWPKNPVSKSPPPPF 95

BLAST of CmoCh15G006130 vs. ExPASy TrEMBL
Match: A0A5A7UIB8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1163G00190 PE=4 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 1.1e-06
Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 0

Query: 1  MGYSTANLMF-----ASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLT 60
          MG STAN++      ASIALRLP E  A A+  P PL  P         ++   +KV L 
Sbjct: 1  MGCSTANILILTIFVASIALRLPSETTARAIADPYPLSWPWLP------IYNTLMKVRLN 60

Query: 61 VKA-----SGEDEAEAPSSKDEKGGRKPWPKQPVPKAPPPPF 93
           +A     +G+DE++ P SK+ K  RKPWPK PV K+PPPPF
Sbjct: 61 DEAGSGEENGDDESD-PPSKEAKSSRKPWPKNPVSKSPPPPF 95

BLAST of CmoCh15G006130 vs. NCBI nr
Match: KAG6578898.1 (hypothetical protein SDJN03_23346, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 172.2 bits (435), Expect = 2.1e-39
Identity = 91/96 (94.79%), Postives = 91/96 (94.79%), Query Frame = 0

Query: 1  MGYSTANLMF----ASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLTV 60
          MGYSTANLMF    ASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLTV
Sbjct: 1  MGYSTANLMFGILVASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLTV 60

Query: 61 KASGEDEAEAPSSKDEKGGRKPWPKQPVPKAPPPPF 93
          KASGEDEAEAPSSKDEKG RKPWPKQPVPKAPPPPF
Sbjct: 61 KASGEDEAEAPSSKDEKGRRKPWPKQPVPKAPPPPF 96

BLAST of CmoCh15G006130 vs. NCBI nr
Match: KAG6578899.1 (hypothetical protein SDJN03_23347, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 7.9e-18
Identity = 63/103 (61.17%), Postives = 72/103 (69.90%), Query Frame = 0

Query: 1   MGYSTANL----MFASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLTV 60
           MGYSTANL    + ASIALR P    ASA+VGPSPLPPP  HS SG L F R IK+SL  
Sbjct: 1   MGYSTANLFIVILVASIALRPPSATTASAVVGPSPLPPPIYHSASGTLSFGRYIKISLEG 60

Query: 61  KA-----SGEDEAE--APSSKDEKGGRKPWPKQPVPKAPPPPF 93
           KA     +GEDE+E   PSSK  +G R+PWPK+PV K+PPPPF
Sbjct: 61  KAGPVVENGEDESEPPPPSSKVRRGPRRPWPKKPVAKSPPPPF 103

BLAST of CmoCh15G006130 vs. NCBI nr
Match: KAA0054914.1 (hypothetical protein E6C27_scaffold43052G00420 [Cucumis melo var. makuwa] >TYK22702.1 hypothetical protein E5676_scaffold1163G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 62.4 bits (150), Expect = 2.4e-06
Identity = 46/102 (45.10%), Postives = 59/102 (57.84%), Query Frame = 0

Query: 1  MGYSTANLMF-----ASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLT 60
          MG STAN++      ASIALRLP E  A A+  P PL  P         ++   +KV L 
Sbjct: 1  MGCSTANILILTIFVASIALRLPSETTARAIADPYPLSWPWLP------IYNTLMKVRLN 60

Query: 61 VKA-----SGEDEAEAPSSKDEKGGRKPWPKQPVPKAPPPPF 93
           +A     +G+DE++ P SK+ K  RKPWPK PV K+PPPPF
Sbjct: 61 DEAGSGEENGDDESD-PPSKEAKSSRKPWPKNPVSKSPPPPF 95

BLAST of CmoCh15G006130 vs. NCBI nr
Match: KAE8646678.1 (hypothetical protein Csa_023589, partial [Cucumis sativus])

HSP 1 Score: 62.0 bits (149), Expect = 3.1e-06
Identity = 42/86 (48.84%), Postives = 52/86 (60.47%), Query Frame = 0

Query: 12 SIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLTVKA-----SGEDEAEA 71
          SIALRLP E  A A+  P PL  P        L++   +KV L  +A     SG+DE++ 
Sbjct: 1  SIALRLPTETTARAIADPYPLSWPRL------LIYNTVMKVRLNDEAGSGEGSGDDESD- 60

Query: 72 PSSKDEKGGRKPWPKQPVPKAPPPPF 93
          P  K+EKG RKPWPK PV K+PPPPF
Sbjct: 61 PPLKEEKGSRKPWPKNPVSKSPPPPF 79

BLAST of CmoCh15G006130 vs. NCBI nr
Match: KAE8637368.1 (hypothetical protein CSA_004461, partial [Cucumis sativus])

HSP 1 Score: 56.2 bits (134), Expect = 1.7e-04
Identity = 42/93 (45.16%), Postives = 53/93 (56.99%), Query Frame = 0

Query: 1  MGYSTANLMF-----ASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLT 60
          MG STAN++      ASIALRLP E  A A+  P PL  P        L++   +KV L 
Sbjct: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRL------LIYNTVMKVRLN 60

Query: 61 VKA-----SGEDEAEAPSSKDEKGGRKPWPKQP 84
           +A     SG+DE++ P  K+EKG RKPWPK P
Sbjct: 61 DEAGSGEGSGDDESD-PPLKEEKGSRKPWPKNP 86

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0K9K21.2e-0848.04Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G058720 PE=4 SV=1[more]
A0A5A7UIB81.1e-0645.10Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAG6578898.12.1e-3994.79hypothetical protein SDJN03_23346, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6578899.17.9e-1861.17hypothetical protein SDJN03_23347, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0054914.12.4e-0645.10hypothetical protein E6C27_scaffold43052G00420 [Cucumis melo var. makuwa] >TYK22... [more]
KAE8646678.13.1e-0648.84hypothetical protein Csa_023589, partial [Cucumis sativus][more]
KAE8637368.11.7e-0445.16hypothetical protein CSA_004461, partial [Cucumis sativus][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 63..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 56..92

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G006130.1CmoCh15G006130.1mRNA