CmoCh15G004810 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G004810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr15: 2177955 .. 2181333 (+)
RNA-Seq ExpressionCmoCh15G004810
SyntenyCmoCh15G004810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGATGGTCACACCTTCAAGAGCTTCTCTCCTGAGTGCTCTAAGAAGCAGTTGGGAAGAAGAACTGTCCAAACCAGATGTTGGCTCATCTAACAGCAAAATCGAAGGCTCTATCACCATTTCTAACCCGACATTCACCCTCTTCCTTTGTCCTCCAGAGATTCCTCGCTTTTCCACTGTCCCGACTAAGGAGTTTCTCACGGTCTGGAGCCCCAAGAACTCGATAACTCTTTCAACAATTAGAACCTTATCTGCTTTGGATAACTCCACAGAAAGCCTGACAATAGGCAGTCCATTATCAAAAAGCTTTCAGACAGTAATGATAAACTACTTAGAGAAGAACAAAGGAAATTAGTGATGAAATCCAGAAAGTCATAATTCATCCTAAAGTCAATTCTATGGAGACGCCTTCACACCGCTGCAGTTTCGACTCTTGCTAATAGTTTAGCACACTCTTTGTTGTTACAATGGGGTCCTGAAGCACAAGGAAATTTTACTCGTTGGTATCAATTAGGTGGTCTGTGGACTTCTGTTACTCTCCACGGTGCTTTCGGACTAATAGGTTTCATGTTACGTCAGTATGAACTTGAAATGGTCGAAAGAGTTAGAAGATAAAGCAAAGAGGAAAGGTTGAAATACCTGCAGTTTGCACTGCACCATAGATTCTCTTCCACTGTCAAGTTCCCATGTACAATATCATCTTGAGGTACAAAACCCATAATTCTTTTATATGACAGAATTGATTCATTCCTTCCATTTATTAGAATAGAACCTGTAGTCTTGCATCCAATTGCTTTTCCTGCCAAAGCAGAAAGAAACGTTGTTTTTCCAGCCCCAGATGGACCCATGACAGCAGTGATCCGGCCGGGCTTGATGTTTCCAGTGACACATCTCAAAAGGTGCTTGTTTTTTGTTTTCAAAGTAAGGTTTAGGTCTTTAAATGAAACTTCAATAGGAGGGCGCCTTTTATTCTCTGGATTAGTTGCCATTTTAATTACACTTGAGAAAGTAAGATTTTGATTCTCTTGCTGCTGAACCTTTTCTTTCTCGAGTTGCATGTAAGCATGCTGAAACATCTGGCTGTGAGTACTCGAATGCTTTCCCTTTGGCACATGTTTTTTAATACCCTTTTCATTTCTAGTTTCATTATGAAGGCCTTCATGATCATCATGGTCTTCAATTTCAGGTATCATTCCCATGTGATCAGTCTGGCTATCTGTTCTTCCTTCAATGGGCATAGATGAAGCGGATGATGTGGTTGGGATATGTGAGTATGACGTTGATAAATCATCGTCCATATCAGATTTGGATTGATCCAAAATCTTAAATTGTTCTGTATCCGAGCTTTTCACACGTGAAAACTTTCGTGATAGTTGAACTTGCAAACCACTTGCATGCTTCATTGCAGCTTTTTTCGCAGCTTTCCACCTTTGTTGTGCTTTTGCTGTTGTCTTTGCACTGTTTGCTGCTGCCTCCCTGGATTTAGCCAGTCTCCTTTCTCTAGCAGCAAGAACTTGGTCGGAGAAATTATAAATTATGAGTAGCATAGTGCCCAAACCCACCTGCATAAGCAAAGAAAAGTTCCCATTCAAGTCTTGAATAAGCAGTCATTTCTCGTAGTCATGGGTCTGAGTGTAGAACAAGAAAAGTCAGAAAGAAGAGAATGATATTGGCAGGGGTAAATTGGGGAAGAAGAGGACTTGGAGGCCTAATCGGCGAGTAGGTTAGGAGTTGTGCCTTAATCTTCCGAAGTTCGGACTCTTATCCTTCTTGTTACCTTTACTCAGATTTTCACGTTAGTAGATGACTTACTAAAAGTATTACTCCATAAGCATGGATATTCTGATTTGCAGTGTTAGCATCACATGAAGTAAGCTTGAAGCATCCTGCAATACGTCCGGTAGAATAGATCGATGAGAAAAAATAGAGGTTCGAACGTGCAAGGATATGGAATTTGGTATCGCACTTACTATTTTGAGAAGTTGAACCCTTTCTGCAGTAATGTCTGCAATGGCAGCAAAATGGATCGATGAGATTCGAAAGCTCAGTAAACAATGGTTTATATAACATATCAGTGCTTAGAAACAAGTGAATACCCATTATCACAAGGAATTTTTTGGGTGGTTGATGGACAAAATGATCCATCTGAACAGAAAATCTCTCCACTACGACCAACATCAGCCCACATGTTTGCTCCTCCACAGGTATGGTTGGGCCGCCCAGGTGGTAGCTGGTAAAGATATCTGCAAGAACAAGAAAATGGATAACTTCATTATGCTGAAGAACATAGAAAAGTGGCAGACATGGTATGGTTTGTACTTACGGTTCACATACTCCAGTTGTTTCATTCAACTTGGCAAGGGGACAATAGGCTCCTAAAGGGCATGCTGTCAGATACAAAACAGTGTTAGAAAGTGAGCACAAATCAGCTACTTATAAGGGTATAAAACAAGCTTGTAGAGGCTTAAATTTACGAGGGAAATGAAAATGAGCAACTTTCTTGTGAGATTTCACATCAGTTGGAAAGGGGAACGAAACATTCTTTATAAGGGTGTGGAAACATCTCCTTAATGGACACATTTTAAAACCTTGAGAGAAAACCCAGAAGGAAAAGTCCAAAGAGGACAATATCTACTAGCAGTGGACTTAAGCGGTTACAAATGGTATCAGAACCAGATACTGAGTGGTGTGCTAACAGGACGCTGGGCCCTCAAGGGGGTGGATTGTGAGATCCCACGTCAGTTGGAGAAGGTAACAAAACATTCCTTATAAGGGTGTGAAAACCTCTCCCTAGTGGACGCGTTCTAAAACTTTGAGGGGAAGCCCGTAAGGGAAAGCTCAAAAAAGACAGTATCTGCTAGCGGTGAGCTTGGGCTGTGACAAATGGTATAAGAGGCGGACATCGGGCGGTGTGCCAACGAGGATGCTAGGCCCTCAAGGGGGGTGGATTGTGAGATCACACATCGGTTGGAGAAGAGAACGAAACATTTCTTATAAGGGTGTGAAAACTTCTCCCTAGTGGATGCATTTTAAAACCTTGAGGGAAAGCCCAGAAGGGAAAACCCAAAGAGAGCAACATCTGCTAGTAGGGGGCTTGGGCGGTTACATTTCTAGAACAAGCAGGTATAGGTCTAAATACTTACGAATCATGCATGTAAGACCCTTAGGACAGAAGAAACCTTCGCAACAAGCTTGGCAATCATGCATTCTCGAAGGGATTTGCTGGGAATTAGTAAGGTCGACGAGCTGATCGGGACCGACACTGCATGCCCATCCTGGCTCACAACCAGAAGCCCAAGATGTCAAATTACAATTGTTGTTAAGTTTCAGTTGGAGGAAGGAAGCAGTTGAAGCAGTTGGGGGAGCCTGAAGGATGA

mRNA sequence

ATGGAGATGGTCACACCTTCAAGAGCTTCTCTCCTGAGTGCTCTAAGAAGCAGTTGGGAAGAAGAACTGTCCAAACCAGATGTTGGCTCATCTAACAGCAAAATCGAAGGCTCTATCACCATTTCTAACCCGACATTCACCCTCTTCCTTTGTCCTCCAGAGATTCCTCGCTTTTCCACTGTCCCGACTAAGGAGTTTCTCACGGTCTGGAGCCCCAAGAACTCGATAACTCTTTCAACAATTAGAACCTTATCTGCTTTGGATAACTCCACAGAAAGCCTGACAATAGGCAGTCCATTATCAAAAAGCTTTCAGACAAATAGAACCTGTAGTCTTGCATCCAATTGCTTTTCCTGCCAAAGCAGAAAGAAACGTTGTTTTTCCAGCCCCAGATGGACCCATGACAGCAGTGATCCGGCCGGGCTTGATGTTTCCAGTGACACATCTCAAAAGTTTCATTATGAAGGCCTTCATGATCATCATGGTCTTCAATTTCAGTGCTTAGAAACAAGTGAATACCCATTATCACAAGGAATTTTTTGGGTGGTTGATGGACAAAATGATCCATCTGAACAGAAAATCTCTCCACTACGACCAACATCAGCCCACATGTTTGCTCCTCCACAGGTGGTAGCTGGTAAAGATATCTGCAAGAACAAGAAAATGGATAACTTCATTATGCTGAAGAACATAGAAAAGTGGCAGACATGGTATGTTGGAGGAAGGAAGCAGTTGAAGCAGTTGGGGGAGCCTGAAGGATGA

Coding sequence (CDS)

ATGGAGATGGTCACACCTTCAAGAGCTTCTCTCCTGAGTGCTCTAAGAAGCAGTTGGGAAGAAGAACTGTCCAAACCAGATGTTGGCTCATCTAACAGCAAAATCGAAGGCTCTATCACCATTTCTAACCCGACATTCACCCTCTTCCTTTGTCCTCCAGAGATTCCTCGCTTTTCCACTGTCCCGACTAAGGAGTTTCTCACGGTCTGGAGCCCCAAGAACTCGATAACTCTTTCAACAATTAGAACCTTATCTGCTTTGGATAACTCCACAGAAAGCCTGACAATAGGCAGTCCATTATCAAAAAGCTTTCAGACAAATAGAACCTGTAGTCTTGCATCCAATTGCTTTTCCTGCCAAAGCAGAAAGAAACGTTGTTTTTCCAGCCCCAGATGGACCCATGACAGCAGTGATCCGGCCGGGCTTGATGTTTCCAGTGACACATCTCAAAAGTTTCATTATGAAGGCCTTCATGATCATCATGGTCTTCAATTTCAGTGCTTAGAAACAAGTGAATACCCATTATCACAAGGAATTTTTTGGGTGGTTGATGGACAAAATGATCCATCTGAACAGAAAATCTCTCCACTACGACCAACATCAGCCCACATGTTTGCTCCTCCACAGGTGGTAGCTGGTAAAGATATCTGCAAGAACAAGAAAATGGATAACTTCATTATGCTGAAGAACATAGAAAAGTGGCAGACATGGTATGTTGGAGGAAGGAAGCAGTTGAAGCAGTTGGGGGAGCCTGAAGGATGA

Protein sequence

MEMVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVPTKEFLTVWSPKNSITLSTIRTLSALDNSTESLTIGSPLSKSFQTNRTCSLASNCFSCQSRKKRCFSSPRWTHDSSDPAGLDVSSDTSQKFHYEGLHDHHGLQFQCLETSEYPLSQGIFWVVDGQNDPSEQKISPLRPTSAHMFAPPQVVAGKDICKNKKMDNFIMLKNIEKWQTWYVGGRKQLKQLGEPEG
Homology
[Close]
BLAST of CmoCh15G004810 vs. ExPASy TrEMBL
Match: A0A0K9Q0Z0 (Uncharacterized protein OS=Zostera marina OX=29655 GN=ZOSMA_133G00160 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 6.8e-25
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 0 

Query: 3   MVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVP 62
           M TPS+AS   ALRS ++EELS PDVGSS    EGSITIS+PTFTLFLCPPEIPRFSTVP
Sbjct: 1   MFTPSQASRRRALRSRFDEELSSPDVGSSRINKEGSITISSPTFTLFLCPPEIPRFSTVP 60

Query: 63  TKEFLTVWSPKNSITLSTIRTLSALDNSTESLTIGSPLSKSFQTNRTCSLAS 115
           T E LT WSP++SITLS+ RTLSA +NS  SL +      S      C+++S
Sbjct: 61  TNESLTAWSPRDSITLSSTRTLSAFENSAGSLHLALNQRFSSTDRLPCTISS 112

[Close]
BLAST of CmoCh15G004810 vs. ExPASy TrEMBL
Match: A0A7C8ZMD5 (Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 1.8e-17
Identity = 59/92 (64.13%), Postives = 67/92 (72.83%), Query Frame = 0 

Query: 3  MVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVP 62
          M TPS+AS L A +S  EE LS+PDVGSS +K EGS+TIS PTFT    PPEIPRFSTVP
Sbjct: 1  MFTPSQASRLRARKSKSEEALSRPDVGSSRNKSEGSMTISKPTFTRLRWPPEIPRFSTVP 60

Query: 63 TKEFLTVWSPKNSITLSTIRTLSALDNSTESL 95
          TKE  T  SP+ SITLSTIR LS+   S  +L
Sbjct: 61 TKESRTSCSPRFSITLSTIRILSSFLKSDANL 92

[Close]
BLAST of CmoCh15G004810 vs. ExPASy TrEMBL
Match: A0A0A9QKM8 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.7e-12
Identity = 45/65 (69.23%), Postives = 50/65 (76.92%), Query Frame = 0 

Query: 3  MVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVP 62
          M  PSRAS    LRSS +EELS+P+VGSS  + +G ITIS PT T FL PPEIPRFSTVP
Sbjct: 1  MFVPSRASWQRVLRSSCDEELSRPEVGSSRIRRDGFITISIPTLTRFLWPPEIPRFSTVP 60

Query: 63 TKEFL 68
          TKEFL
Sbjct: 61 TKEFL 65

[Close]
BLAST of CmoCh15G004810 vs. ExPASy TrEMBL
Match: A0A7I8K2N8 (Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02001977 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.0e-09
Identity = 49/92 (53.26%), Postives = 53/92 (57.61%), Query Frame = 0 

Query: 3  MVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVP 62
          M TPSRAS   ALRSSWEE LSKP+VGSS    EGSITISNPT                 
Sbjct: 1  MFTPSRASRRRALRSSWEEALSKPEVGSSRISKEGSITISNPT----------------- 60

Query: 63 TKEFLTVWSPKNSITLSTIRTLSALDNSTESL 95
                   P +SITLST +TLSALD S+ SL
Sbjct: 61 ---------PSDSITLSTTKTLSALDKSSGSL 66

[Close]
BLAST of CmoCh15G004810 vs. ExPASy TrEMBL
Match: A0A0A9JGE6 (Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.8e-08
Identity = 38/56 (67.86%), Postives = 42/56 (75.00%), Query Frame = 0 

Query: 39 ITISNPTFTLFLCPPEIPRFSTVPTKEFLTVWSPKNSITLSTIRTLSALDNSTESL 95
          +TIS+PTFT    PPE+PR STVPTKE  T  SP +SITLST RTLSA D S ESL
Sbjct: 1  MTISSPTFTRLRWPPEMPRCSTVPTKESRTACSPNDSITLSTTRTLSAFDMSAESL 56

[Close]
BLAST of CmoCh15G004810 vs. NCBI nr
Match: KMZ74167.1 (hypothetical protein ZOSMA_133G00160 [Zostera marina])

HSP 1 Score: 124.4 bits (311), Expect = 1.4e-24
Identity = 70/112 (62.50%), Postives = 82/112 (73.21%), Query Frame = 0 

Query: 3   MVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVP 62
           M TPS+AS   ALRS ++EELS PDVGSS    EGSITIS+PTFTLFLCPPEIPRFSTVP
Sbjct: 1   MFTPSQASRRRALRSRFDEELSSPDVGSSRINKEGSITISSPTFTLFLCPPEIPRFSTVP 60

Query: 63  TKEFLTVWSPKNSITLSTIRTLSALDNSTESLTIGSPLSKSFQTNRTCSLAS 115
           T E LT WSP++SITLS+ RTLSA +NS  SL +      S      C+++S
Sbjct: 61  TNESLTAWSPRDSITLSSTRTLSAFENSAGSLHLALNQRFSSTDRLPCTISS 112

[Close]
BLAST of CmoCh15G004810 vs. NCBI nr
Match: KAG7016297.1 (hypothetical protein SDJN02_21404, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 99.0 bits (245), Expect = 6.3e-17
Identity = 44/47 (93.62%), Postives = 45/47 (95.74%), Query Frame = 0 

Query: 167 CLETSEYPLSQGIFWVVDGQNDPSEQKISPLRPTSAHMFAPPQVVAG 214
           CLETSEYPLSQGIFWVVDGQNDPSEQKISPLRPTSAHMFAPPQ+  G
Sbjct: 105 CLETSEYPLSQGIFWVVDGQNDPSEQKISPLRPTSAHMFAPPQLEEG 151

[Close]
BLAST of CmoCh15G004810 vs. NCBI nr
Match: CAA2615727.1 (unnamed protein product [Spirodela intermedia] >CAA7390693.1 unnamed protein product [Spirodela intermedia])

HSP 1 Score: 72.4 bits (176), Expect = 6.3e-09
Identity = 49/92 (53.26%), Postives = 53/92 (57.61%), Query Frame = 0 

Query: 3  MVTPSRASLLSALRSSWEEELSKPDVGSSNSKIEGSITISNPTFTLFLCPPEIPRFSTVP 62
          M TPSRAS   ALRSSWEE LSKP+VGSS    EGSITISNPT                 
Sbjct: 1  MFTPSRASRRRALRSSWEEALSKPEVGSSRISKEGSITISNPT----------------- 60

Query: 63 TKEFLTVWSPKNSITLSTIRTLSALDNSTESL 95
                   P +SITLST +TLSALD S+ SL
Sbjct: 61 ---------PSDSITLSTTKTLSALDKSSGSL 66

The following BLAST results are available for this feature:
BLAST of CmoCh15G004810 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh15G004810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0K9Q0Z06.8e-2562.50Uncharacterized protein OS=Zostera marina OX=29655 GN=ZOSMA_133G00160 PE=4 SV=1[more]
A0A7C8ZMD51.8e-1764.13Uncharacterized protein OS=Opuntia streptacantha OX=393608 PE=4 SV=1[more]
A0A0A9QKM81.7e-1269.23Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
A0A7I8K2N83.0e-0953.26Hypothetical protein OS=Spirodela intermedia OX=51605 GN=SI7747_02001977 PE=4 SV... [more]
A0A0A9JGE65.8e-0867.86Uncharacterized protein OS=Arundo donax OX=35708 PE=4 SV=1[more]
BLAST of CmoCh15G004810 vs. NCBI nr
Match NameE-valueIdentityDescription
KMZ74167.11.4e-2462.50hypothetical protein ZOSMA_133G00160 [Zostera marina][more]
KAG7016297.16.3e-1793.62hypothetical protein SDJN02_21404, partial [Cucurbita argyrosperma subsp. argyro... [more]
CAA2615727.16.3e-0953.26unnamed protein product [Spirodela intermedia] >CAA7390693.1 unnamed protein pro... [more]
BLAST of CmoCh15G004810 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G004810.1CmoCh15G004810.1mRNA