CmoCh15G004290 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G004290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionpsbP-like protein 1, chloroplastic
LocationCmo_Chr15: 1942466 .. 1942933 (-)
RNA-Seq ExpressionCmoCh15G004290
SyntenyCmoCh15G004290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGAGGGGCCGACGTAAGAAACGTGGCTGAGCGAAGGCGCGAACACAGCGGATAGGCAATCCAAGAACAGAACCAGAAGATAAGTTCATCTCACATTAACGAAGCACACGCTTCAGAAGCAAAGGATCTTCAATGGCGTCTCTGCATTGCTTACCCCCTGTCCAGAAGTCTCTCTTCATCAATTCTCTTTCTCAGGTTCACATTTCCTTCAAAATCAATCCAATTTTGGCTTCTGTTTTCTTCCTGTCATTCGTTCTGATTAACGATCAATTATCTTTTTTCGCTCGCAGAAACTCCATGGAAGATCTGTTTGCTGCAGAGCGGGGATTTCATTTCTTGTAAGGGCTGAGCGAGCACGCGGATCTTCAGTTAATGGCCATGCGTGCAGTTCCGAAGGTCAGTTTACCAAATTGAGATGGAAAATCAGGTTTCATATGAATTTGAGTACTGATTATACTGGAATTTAG

mRNA sequence

GGTGAGGGGCCGACGTAAGAAACGTGGCTGAGCGAAGGCGCGAACACAGCGGATAGGCAATCCAAGAACAGAACCAGAAGATAAGTTCATCTCACATTAACGAAGCACACGCTTCAGAAGCAAAGGATCTTCAATGGCGTCTCTGCATTGCTTACCCCCTGTCCAGAAGTCTCTCTTCATCAATTCTCTTTCTCAGAAACTCCATGGAAGATCTGTTTGCTGCAGAGCGGGGATTTCATTTCTTGTAAGGGCTGAGCGAGCACGCGGATCTTCAGTTAATGGCCATGCGTGCAGTTCCGAAGGTCAGTTTACCAAATTGAGATGGAAAATCAGGTTTCATATGAATTTGAGTACTGATTATACTGGAATTTAG

Coding sequence (CDS)

ATGGCGTCTCTGCATTGCTTACCCCCTGTCCAGAAGTCTCTCTTCATCAATTCTCTTTCTCAGAAACTCCATGGAAGATCTGTTTGCTGCAGAGCGGGGATTTCATTTCTTGTAAGGGCTGAGCGAGCACGCGGATCTTCAGTTAATGGCCATGCGTGCAGTTCCGAAGGTCAGTTTACCAAATTGAGATGGAAAATCAGGTTTCATATGAATTTGAGTACTGATTATACTGGAATTTAG

Protein sequence

MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFTKLRWKIRFHMNLSTDYTGI
Homology
BLAST of CmoCh15G004290 vs. ExPASy TrEMBL
Match: A0A6J1FHM7 (psbP-like protein 1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445433 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 4.9e-30
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0

Query: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT 60
          MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT
Sbjct: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT 60

Query: 61 KLRWKIR 68
          KLRWKIR
Sbjct: 61 KLRWKIR 67

BLAST of CmoCh15G004290 vs. ExPASy TrEMBL
Match: A0A6J1JVV0 (psbP-like protein 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489333 PE=4 SV=1)

HSP 1 Score: 135.6 bits (340), Expect = 9.2e-29
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 0

Query: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT 60
          MASLHCLPPVQKSLFINSL QKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQF 
Sbjct: 1  MASLHCLPPVQKSLFINSLPQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFI 60

Query: 61 KLRWKIR 68
          KLRWKIR
Sbjct: 61 KLRWKIR 67

BLAST of CmoCh15G004290 vs. ExPASy TrEMBL
Match: A0A6J1FN44 (psbP-like protein 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445433 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 7.5e-23
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE 57
          MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE
Sbjct: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE 56

BLAST of CmoCh15G004290 vs. ExPASy TrEMBL
Match: A0A6J1JSB4 (psbP-like protein 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489333 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 2.9e-22
Identity = 55/56 (98.21%), Postives = 55/56 (98.21%), Query Frame = 0

Query: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE 57
          MASLHCLPPVQKSLFINSL QKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE
Sbjct: 1  MASLHCLPPVQKSLFINSLPQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE 56

BLAST of CmoCh15G004290 vs. ExPASy TrEMBL
Match: A0A6J1BYZ6 (psbP-like protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111006749 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 5.2e-16
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 0

Query: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE 57
          MASLHC   VQ SLF+NSLSQKL GR +CCRAGISFLVRAE+A  SS+NGHACSSE
Sbjct: 1  MASLHCSSSVQNSLFVNSLSQKLRGRFICCRAGISFLVRAEQAHASSINGHACSSE 56

BLAST of CmoCh15G004290 vs. NCBI nr
Match: XP_022939579.1 (psbP-like protein 1, chloroplastic isoform X1 [Cucurbita moschata])

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0

Query: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT 60
          MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT
Sbjct: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT 60

Query: 61 KLRWKIR 68
          KLRWKIR
Sbjct: 61 KLRWKIR 67

BLAST of CmoCh15G004290 vs. NCBI nr
Match: KAG6578724.1 (hypothetical protein SDJN03_23172, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.8 bits (351), Expect = 1.0e-29
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0

Query: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT 60
          MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT
Sbjct: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT 60

Query: 61 KLRWKIR 68
          KLRWKIR
Sbjct: 61 KLRWKIR 67

BLAST of CmoCh15G004290 vs. NCBI nr
Match: XP_023551141.1 (psbP-like protein 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 137.9 bits (346), Expect = 3.8e-29
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 0

Query: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT 60
          MASLHCLPPVQKSLFINSL QKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT
Sbjct: 1  MASLHCLPPVQKSLFINSLPQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT 60

Query: 61 KLRWKIR 68
          KLRWKIR
Sbjct: 61 KLRWKIR 67

BLAST of CmoCh15G004290 vs. NCBI nr
Match: XP_022993266.1 (psbP-like protein 1, chloroplastic isoform X1 [Cucurbita maxima])

HSP 1 Score: 135.6 bits (340), Expect = 1.9e-28
Identity = 65/67 (97.01%), Postives = 65/67 (97.01%), Query Frame = 0

Query: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFT 60
          MASLHCLPPVQKSLFINSL QKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQF 
Sbjct: 1  MASLHCLPPVQKSLFINSLPQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSEGQFI 60

Query: 61 KLRWKIR 68
          KLRWKIR
Sbjct: 61 KLRWKIR 67

BLAST of CmoCh15G004290 vs. NCBI nr
Match: KAG7016254.1 (PsbP-like protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.9 bits (289), Expect = 1.6e-22
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0

Query: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE 57
          MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE
Sbjct: 1  MASLHCLPPVQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE 56

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FHM74.9e-30100.00psbP-like protein 1, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1JVV09.2e-2997.01psbP-like protein 1, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1FN447.5e-23100.00psbP-like protein 1, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1JSB42.9e-2298.21psbP-like protein 1, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1BYZ65.2e-1678.57psbP-like protein 1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11100674... [more]
Match NameE-valueIdentityDescription
XP_022939579.11.0e-29100.00psbP-like protein 1, chloroplastic isoform X1 [Cucurbita moschata][more]
KAG6578724.11.0e-29100.00hypothetical protein SDJN03_23172, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_023551141.13.8e-2998.51psbP-like protein 1, chloroplastic isoform X1 [Cucurbita pepo subsp. pepo][more]
XP_022993266.11.9e-2897.01psbP-like protein 1, chloroplastic isoform X1 [Cucurbita maxima][more]
KAG7016254.11.6e-22100.00PsbP-like protein 1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G004290.1CmoCh15G004290.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0009507 chloroplast
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
molecular_function GO:0005509 calcium ion binding