CmoCh15G004180 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G004180
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionElongator complex protein 1
LocationCmo_Chr15: 1887121 .. 1888057 (+)
RNA-Seq ExpressionCmoCh15G004180
SyntenyCmoCh15G004180
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
CTAAAATTCCCACTGACCGATCGGAGGAACTAGGTTATATAAATAACCTGGCAGCAACCGCCGCCGTGAAAAGTTCCTCTTCTTCGAAGGCTTCAATTCCCTAAAACCCTAAAAAAACCCCAGCTCTCTCTGAAGATTCGAGATTTCTGTGTTCCGAGATGAATAACTTGAAGCTTTACACCGAGAGCTCTCTCAATCTCGAATTGCAGACCGATGAAGAAGTTGTACAGTTCTCCGCCTTCGACATTGAGCGGAATCGTCTCTTCTTTCTTTCCTCCGCCAATTTCGTATACACTACTCAGCTTACTTCGTTCCATGTGAGTTCTAACCTTCTCGCTTTTCAAATTCGTCTTCTTTCTGTTTTTTTATTTTTTTTATTTTTTTTATCGAATCAATTCTATGAGGTTTCGATGTTTTACTGTGCTAAATATGCTTGTTATTCGCGTTTTTCTGTTCGATGTATCAGAATGAAAGAATGAAGAGCGTAGCCATGTTGCCTGCGGAAGTTCATCATATAGACGTGGAAACTGGGGACTGTGTTACGTCCTTTGATTATTTGATGGAGAAAGAAGCCCTGATAGTGGGAACTCGCAGTGGACTTCTTTTGCTGTTTTCCGTGGATGGCAGTGGGAGTGAAGTTGTTGGCAGGGTGGAGGGTGGTGTGAAACGCATCTCACCTAGTCCAGATGGTGATTTGTTATGCATAATTTCTGGGCTTCGGCAGATTTTAGTAATGACTCATGATTGGGATTTGATGTATGAGAACACTCTCGAGGATTTTCCTGAAGGTGTGTTGACGTACGTAAGGAGTTCTTCCATACTTTAATGAAGGGGGTATTTTTTGTTATATCTTACCTATCTCAACATGTGTATTGCGGTGTATACCAAATTTATATGCACCTGGCTCACTGATAACAAAATAATGACCTTTTCGTAG

mRNA sequence

CTAAAATTCCCACTGACCGATCGGAGGAACTAGGTTATATAAATAACCTGGCAGCAACCGCCGCCGTGAAAAGTTCCTCTTCTTCGAAGGCTTCAATTCCCTAAAACCCTAAAAAAACCCCAGCTCTCTCTGAAGATTCGAGATTTCTGTGTTCCGAGATGAATAACTTGAAGCTTTACACCGAGAGCTCTCTCAATCTCGAATTGCAGACCGATGAAGAAGTTGTACAGTTCTCCGCCTTCGACATTGAGCGGAATCGTCTCTTCTTTCTTTCCTCCGCCAATTTCGTATACACTACTCAGCTTACTTCGTTCCATAATGAAAGAATGAAGAGCGTAGCCATGTTGCCTGCGGAAGTTCATCATATAGACGTGGAAACTGGGGACTGTGTTACGTCCTTTGATTATTTGATGGAGAAAGAAGCCCTGATAGTGGGAACTCGCAGTGGACTTCTTTTGCTGTTTTCCGTGGATGGCAGTGGGAGTGAAGTTGTTGGCAGGGTGGAGGGTGGTGTGAAACGCATCTCACCTAGTCCAGATGGTGATTTGTTATGCATAATTTCTGGGCTTCGGCAGATTTTAGTAATGACTCATGATTGGGATTTGATGTATGAGAACACTCTCGAGGATTTTCCTGAAGGTGTGTTGACGGGGTATTTTTTGTTATATCTTACCTATCTCAACATGTGTATTGCGGTGTATACCAAATTTATATGCACCTGGCTCACTGATAACAAAATAATGACCTTTTCGTAG

Coding sequence (CDS)

ATGAATAACTTGAAGCTTTACACCGAGAGCTCTCTCAATCTCGAATTGCAGACCGATGAAGAAGTTGTACAGTTCTCCGCCTTCGACATTGAGCGGAATCGTCTCTTCTTTCTTTCCTCCGCCAATTTCGTATACACTACTCAGCTTACTTCGTTCCATAATGAAAGAATGAAGAGCGTAGCCATGTTGCCTGCGGAAGTTCATCATATAGACGTGGAAACTGGGGACTGTGTTACGTCCTTTGATTATTTGATGGAGAAAGAAGCCCTGATAGTGGGAACTCGCAGTGGACTTCTTTTGCTGTTTTCCGTGGATGGCAGTGGGAGTGAAGTTGTTGGCAGGGTGGAGGGTGGTGTGAAACGCATCTCACCTAGTCCAGATGGTGATTTGTTATGCATAATTTCTGGGCTTCGGCAGATTTTAGTAATGACTCATGATTGGGATTTGATGTATGAGAACACTCTCGAGGATTTTCCTGAAGGTGTGTTGACGGGGTATTTTTTGTTATATCTTACCTATCTCAACATGTGTATTGCGGTGTATACCAAATTTATATGCACCTGGCTCACTGATAACAAAATAATGACCTTTTCGTAG

Protein sequence

MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSVAMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVKRISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEGVLTGYFLLYLTYLNMCIAVYTKFICTWLTDNKIMTFS
Homology
[Close]
BLAST of CmoCh15G004180 vs. ExPASy Swiss-Prot
Match: Q9FNA4 (Elongator complex protein 1 OS=Arabidopsis thaliana OX=3702 GN=ELP1 PE=1 SV=1)

HSP 1 Score: 190.3 bits (482), Expect = 2.1e-47
Identity = 92/161 (57.14%), Postives = 124/161 (77.02%), Query Frame = 0 

Query: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60
           M NLKL++E   N++L + EEVVQF+A+DI+++RLFF SSANFVY  QL+SF NE   + 
Sbjct: 1   MKNLKLFSEVPQNIQLHSTEEVVQFAAYDIDQSRLFFASSANFVYALQLSSFQNESAGAK 60

Query: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120
           + +P EV  ID+E GD +T+FDYL EKE+L++GT  GLLL+ +V+   +E+VG +EGGVK
Sbjct: 61  SAMPVEVCSIDIEPGDFITAFDYLAEKESLLIGTSHGLLLVHNVESDVTELVGNIEGGVK 120

Query: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 162
            ISP+P GDLL +I+GL Q+LVMT+DW LMYE  L + PEG
Sbjct: 121 CISPNPTGDLLGLITGLGQLLVMTYDWALMYEKALGEVPEG 161

[Close]
BLAST of CmoCh15G004180 vs. ExPASy Swiss-Prot
Match: Q8VHU4 (Elongator complex protein 1 OS=Rattus norvegicus OX=10116 GN=Elp1 PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 6.3e-07
Identity = 27/87 (31.03%), Postives = 52/87 (59.77%), Query Frame = 0 

Query: 77  CVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVKRISPSPDGDLLCIISG 136
           C+     L+++E++ V T SG +++ +V     E VG V  G+  +S SPD +LL + + 
Sbjct: 70  CIVGIQDLLDQESVCVATASGDVIVCNVSTQQLECVGNVASGISVMSWSPDQELLLLATA 129

Query: 137 LRQILVMTHDWDLMYENTL--EDFPEG 162
            + +++MT D++++ E  +  +DF EG
Sbjct: 130 QQTLIMMTRDYEVITEQQIHQDDFGEG 156

[Close]
BLAST of CmoCh15G004180 vs. ExPASy Swiss-Prot
Match: Q7TT37 (Elongator complex protein 1 OS=Mus musculus OX=10090 GN=Elp1 PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 3.1e-06
Identity = 26/87 (29.89%), Postives = 52/87 (59.77%), Query Frame = 0 

Query: 77  CVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVKRISPSPDGDLLCIISG 136
           C+     L+++E++ V T SG +++ ++     E VG V  G+  +S SPD +LL + + 
Sbjct: 70  CIVGIQDLLDQESVCVATASGDVIVCNLSTQQLECVGSVASGISVMSWSPDQELLLLATA 129

Query: 137 LRQILVMTHDWDLMYENTL--EDFPEG 162
            + +++MT D++++ E  +  +DF EG
Sbjct: 130 QQTLIMMTKDFEVIAEEQIHQDDFGEG 156

[Close]
BLAST of CmoCh15G004180 vs. ExPASy Swiss-Prot
Match: Q8WND5 (Elongator complex protein 1 OS=Oryctolagus cuniculus OX=9986 GN=ELP1 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.2e-05
Identity = 25/86 (29.07%), Postives = 51/86 (59.30%), Query Frame = 0 

Query: 77  CVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVKRISPSPDGDLLCIISG 136
           C+     L+++E++ + T SG ++L ++     E VG V  G+  +S SPD +L+ + +G
Sbjct: 70  CIVGIQDLLDQESVCIATASGDVILCNLSTHQLECVGSVASGISVMSWSPDQELVLLATG 129

Query: 137 LRQILVMTHDWDLMYENTL--EDFPE 161
            + +++MT D++ + E  +  +DF E
Sbjct: 130 QQTLIMMTKDFEPIMEQQIHQDDFGE 155

[Close]
BLAST of CmoCh15G004180 vs. ExPASy Swiss-Prot
Match: O95163 (Elongator complex protein 1 OS=Homo sapiens OX=9606 GN=ELP1 PE=1 SV=3)

HSP 1 Score: 49.7 bits (117), Expect = 4.5e-05
Identity = 26/79 (32.91%), Postives = 49/79 (62.03%), Query Frame = 0 

Query: 84  LMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVKRISPSPDGDLLCIISGLRQILVM 143
           L+++E++ V T SG ++L S+     E VG V  G+  +S SPD +L+ + +G + +++M
Sbjct: 77  LLDQESVCVATASGDVILCSLSTQQLECVGSVASGISVMSWSPDQELVLLATGQQTLIMM 136

Query: 144 THDWDLMYENTL--EDFPE 161
           T D++ + E  +  +DF E
Sbjct: 137 TKDFEPILEQQIHQDDFGE 155

[Close]
BLAST of CmoCh15G004180 vs. ExPASy TrEMBL
Match: A0A6J1FJA3 (Elongator complex protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111444773 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.3e-84
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 

Query: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60
           MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV
Sbjct: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60

Query: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120
           AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK
Sbjct: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120

Query: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 162
           RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 161

[Close]
BLAST of CmoCh15G004180 vs. ExPASy TrEMBL
Match: A0A6J1JZ47 (Elongator complex protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111489178 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 5.6e-83
Identity = 159/161 (98.76%), Postives = 159/161 (98.76%), Query Frame = 0 

Query: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60
           MNNLKLYTESSL LELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV
Sbjct: 1   MNNLKLYTESSLKLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60

Query: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120
           AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLL SVDGSGSEVVGRVEGGVK
Sbjct: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLISVDGSGSEVVGRVEGGVK 120

Query: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 162
           RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 161

[Close]
BLAST of CmoCh15G004180 vs. ExPASy TrEMBL
Match: A0A5A7VJW8 (Elongator complex protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold98G003290 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.0e-76
Identity = 147/161 (91.30%), Postives = 156/161 (96.89%), Query Frame = 0 

Query: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60
           MNNLKLY+ESSL LELQT+ EV+QFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV
Sbjct: 1   MNNLKLYSESSLKLELQTNGEVIQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60

Query: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120
           AMLPAEVH IDVETGD VTSFDYLMEKEALI+GTR+G+LLLFSVDG+G+E+VG VEGGVK
Sbjct: 61  AMLPAEVHPIDVETGDYVTSFDYLMEKEALIMGTRNGVLLLFSVDGNGTEIVGMVEGGVK 120

Query: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 162
           RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 161

[Close]
BLAST of CmoCh15G004180 vs. ExPASy TrEMBL
Match: A0A0A0KU69 (Elongator complex protein 1 OS=Cucumis sativus OX=3659 GN=Csa_5G512880 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.0e-76
Identity = 147/161 (91.30%), Postives = 155/161 (96.27%), Query Frame = 0 

Query: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60
           MNNLKLY+ESSL LELQT+ EV+QFSAFDIERNRLFFLSSANF+YTTQLTSFHNERMKSV
Sbjct: 1   MNNLKLYSESSLKLELQTNGEVIQFSAFDIERNRLFFLSSANFIYTTQLTSFHNERMKSV 60

Query: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120
           AMLPAEVH IDVETGD VTSFDYLMEKEALIVGTR+G LLLFSVDG+G+E+VG VEGGVK
Sbjct: 61  AMLPAEVHPIDVETGDYVTSFDYLMEKEALIVGTRNGALLLFSVDGNGTEIVGMVEGGVK 120

Query: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 162
           RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 161

[Close]
BLAST of CmoCh15G004180 vs. ExPASy TrEMBL
Match: A0A1S3CJD4 (Elongator complex protein 1 OS=Cucumis melo OX=3656 GN=LOC103501639 PE=3 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.0e-76
Identity = 147/161 (91.30%), Postives = 156/161 (96.89%), Query Frame = 0 

Query: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60
           MNNLKLY+ESSL LELQT+ EV+QFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV
Sbjct: 1   MNNLKLYSESSLKLELQTNGEVIQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60

Query: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120
           AMLPAEVH IDVETGD VTSFDYLMEKEALI+GTR+G+LLLFSVDG+G+E+VG VEGGVK
Sbjct: 61  AMLPAEVHPIDVETGDYVTSFDYLMEKEALIMGTRNGVLLLFSVDGNGTEIVGMVEGGVK 120

Query: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 162
           RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 161

[Close]
BLAST of CmoCh15G004180 vs. NCBI nr
Match: XP_022938580.1 (elongator complex protein 1 [Cucurbita moschata] >XP_022938582.1 elongator complex protein 1 [Cucurbita moschata] >XP_022938583.1 elongator complex protein 1 [Cucurbita moschata])

HSP 1 Score: 321.6 bits (823), Expect = 4.7e-84
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0 

Query: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60
           MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV
Sbjct: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60

Query: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120
           AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK
Sbjct: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120

Query: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 162
           RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 161

[Close]
BLAST of CmoCh15G004180 vs. NCBI nr
Match: XP_023550508.1 (elongator complex protein 1 [Cucurbita pepo subsp. pepo] >XP_023550509.1 elongator complex protein 1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 319.3 bits (817), Expect = 2.3e-83
Identity = 160/161 (99.38%), Postives = 160/161 (99.38%), Query Frame = 0 

Query: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60
           MNNLKLYTESSL LELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV
Sbjct: 1   MNNLKLYTESSLKLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60

Query: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120
           AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK
Sbjct: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120

Query: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 162
           RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 161

[Close]
BLAST of CmoCh15G004180 vs. NCBI nr
Match: XP_022993042.1 (elongator complex protein 1 [Cucurbita maxima] >XP_022993043.1 elongator complex protein 1 [Cucurbita maxima] >XP_022993044.1 elongator complex protein 1 [Cucurbita maxima])

HSP 1 Score: 317.0 bits (811), Expect = 1.1e-82
Identity = 159/161 (98.76%), Postives = 159/161 (98.76%), Query Frame = 0 

Query: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60
           MNNLKLYTESSL LELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV
Sbjct: 1   MNNLKLYTESSLKLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60

Query: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120
           AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLL SVDGSGSEVVGRVEGGVK
Sbjct: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLISVDGSGSEVVGRVEGGVK 120

Query: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 162
           RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 161

[Close]
BLAST of CmoCh15G004180 vs. NCBI nr
Match: KAG6578714.1 (Elongator complex protein 1, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315.1 bits (806), Expect = 4.4e-82
Identity = 158/161 (98.14%), Postives = 158/161 (98.14%), Query Frame = 0 

Query: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60
           MNNLKLYTESSL LELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV
Sbjct: 1   MNNLKLYTESSLKLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60

Query: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120
           AMLPA VHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDG GSEVVGRVEGGVK
Sbjct: 61  AMLPAGVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGGGSEVVGRVEGGVK 120

Query: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 162
           RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 161

[Close]
BLAST of CmoCh15G004180 vs. NCBI nr
Match: KAG7016245.1 (Elongator complex protein 1 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 313.2 bits (801), Expect = 1.7e-81
Identity = 157/161 (97.52%), Postives = 157/161 (97.52%), Query Frame = 0 

Query: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60
           MNNLKLYTE SL LELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV
Sbjct: 1   MNNLKLYTECSLKLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60

Query: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120
           AMLPA VHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDG GSEVVGRVEGGVK
Sbjct: 61  AMLPAGVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGGGSEVVGRVEGGVK 120

Query: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 162
           RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG
Sbjct: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 161

[Close]
BLAST of CmoCh15G004180 vs. TAIR 10
Match: AT5G13680.1 (IKI3 family protein )

HSP 1 Score: 190.3 bits (482), Expect = 1.5e-48
Identity = 92/161 (57.14%), Postives = 124/161 (77.02%), Query Frame = 0 

Query: 1   MNNLKLYTESSLNLELQTDEEVVQFSAFDIERNRLFFLSSANFVYTTQLTSFHNERMKSV 60
           M NLKL++E   N++L + EEVVQF+A+DI+++RLFF SSANFVY  QL+SF NE   + 
Sbjct: 1   MKNLKLFSEVPQNIQLHSTEEVVQFAAYDIDQSRLFFASSANFVYALQLSSFQNESAGAK 60

Query: 61  AMLPAEVHHIDVETGDCVTSFDYLMEKEALIVGTRSGLLLLFSVDGSGSEVVGRVEGGVK 120
           + +P EV  ID+E GD +T+FDYL EKE+L++GT  GLLL+ +V+   +E+VG +EGGVK
Sbjct: 61  SAMPVEVCSIDIEPGDFITAFDYLAEKESLLIGTSHGLLLVHNVESDVTELVGNIEGGVK 120

Query: 121 RISPSPDGDLLCIISGLRQILVMTHDWDLMYENTLEDFPEG 162
            ISP+P GDLL +I+GL Q+LVMT+DW LMYE  L + PEG
Sbjct: 121 CISPNPTGDLLGLITGLGQLLVMTYDWALMYEKALGEVPEG 161

The following BLAST results are available for this feature:
BLAST of CmoCh15G004180 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FNA42.1e-4757.14Elongator complex protein 1 OS=Arabidopsis thaliana OX=3702 GN=ELP1 PE=1 SV=1[more]
Q8VHU46.3e-0731.03Elongator complex protein 1 OS=Rattus norvegicus OX=10116 GN=Elp1 PE=2 SV=1[more]
Q7TT373.1e-0629.89Elongator complex protein 1 OS=Mus musculus OX=10090 GN=Elp1 PE=1 SV=2[more]
Q8WND51.2e-0529.07Elongator complex protein 1 OS=Oryctolagus cuniculus OX=9986 GN=ELP1 PE=2 SV=1[more]
O951634.5e-0532.91Elongator complex protein 1 OS=Homo sapiens OX=9606 GN=ELP1 PE=1 SV=3[more]
BLAST of CmoCh15G004180 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1FJA32.3e-84100.00Elongator complex protein 1 OS=Cucurbita moschata OX=3662 GN=LOC111444773 PE=3 S... [more]
A0A6J1JZ475.6e-8398.76Elongator complex protein 1 OS=Cucurbita maxima OX=3661 GN=LOC111489178 PE=3 SV=... [more]
A0A5A7VJW81.0e-7691.30Elongator complex protein 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A0A0KU691.0e-7691.30Elongator complex protein 1 OS=Cucumis sativus OX=3659 GN=Csa_5G512880 PE=3 SV=1[more]
A0A1S3CJD41.0e-7691.30Elongator complex protein 1 OS=Cucumis melo OX=3656 GN=LOC103501639 PE=3 SV=1[more]
BLAST of CmoCh15G004180 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022938580.14.7e-84100.00elongator complex protein 1 [Cucurbita moschata] >XP_022938582.1 elongator compl... [more]
XP_023550508.12.3e-8399.38elongator complex protein 1 [Cucurbita pepo subsp. pepo] >XP_023550509.1 elongat... [more]
XP_022993042.11.1e-8298.76elongator complex protein 1 [Cucurbita maxima] >XP_022993043.1 elongator complex... [more]
KAG6578714.14.4e-8298.14Elongator complex protein 1, partial [Cucurbita argyrosperma subsp. sororia][more]
KAG7016245.11.7e-8197.52Elongator complex protein 1 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmoCh15G004180 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G13680.11.5e-4857.14IKI3 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006849Elongator complex protein 1PFAMPF04762IKI3coord: 1..157
e-value: 6.2E-26
score: 90.7
IPR006849Elongator complex protein 1PANTHERPTHR12747ELONGATOR COMPLEX PROTEIN 1coord: 1..162
IPR035516DNA gyrase/topoisomerase IV, subunit A, C-terminalGENE3D2.120.10.90coord: 2..149
e-value: 2.1E-7
score: 31.9
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 17..197

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G004180.1CmoCh15G004180.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0002098 tRNA wobble uridine modification
biological_process GO:0002926 tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation
cellular_component GO:0005829 cytosol
cellular_component GO:0033588 elongator holoenzyme complex
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0000049 tRNA binding