CmoCh15G003850 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G003850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	zinc finger protein CONSTANS-LIKE 7 isoform X1
Location	Cmo_Chr15: 1772324 .. 1773341 (+)
RNA-Seq Expression	CmoCh15G003850
Synteny	CmoCh15G003850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTTAAAGAAGATCGAGAGAAATGAGCGTCAGCAATGAAATTTCCCTAATCAAGCATCCGATTCGTAAATCCAGAACCAAAACAAGACGACCCAAATTCCTCAGCTAATTTTTCCCCTGAAGATGATCCACGACCCGCCATCGCCGCCAAAGAAGCAGCTCACTCTGTTTCCCCTGCATCCGGAGAACAGCAGCAGCCTGCAGAAGTTTTTACACCAGAACGATACATGGTCGGAGCCGGAACTTGTACGGACGGCGATGAGAAGCAGAGAGAGGGAAGTGGGGGCGGAGGAGAGGTGGGTGTGTTATTCGGAAGTGGTGGAGAAGAAGGAAGCAAGAAGCACAGCGGCGGATGTATGGTTGAAGCTGGATTATGAAGGGATATTGAATGCCTGGTCGGACAAAGCTCCACTTTTCATCAATGGAGAATCGCCGCAGACAGTGCCGAATCTCCATGACGATCCATCTCTCTGCTCCGATTCTCTCCCCAATGTTGTAAGATCAGTTTACTTCATTGAAAATCAGAGTTTTAGATGTGTTGATCTTCAAATTGTTTGGTGTTGATGCAGAGAAATGGAATGGGAAGCGAAGGGAATAACGCGTGGAAAGTCCCAGAAATAGGGAAAGAAAGGGAAGCAAGTGTTCTGAGGTACAAAGAGAAGAGGCAGAGCCGGCTGTTTTCCAAGCGCATTCGCTATCAAGTTAGGAAGCTCAATGCTGAGAAGCGCCCAAGAATTAAGGTAACTTTTCTTCATCCTTCCTAATTTACCACCTCTTTTTACTTTTTACTATCCTTAATATTATGTGACTTTTCTACCCCTCTTTCAGGGTCGCTTTGTGAAAAGAAGCTGAGAACGTGTGAACAAACAGTTCATTTTGGACATAAGGTCATTCTGGGAAATGCAGTCTACCCTTCTATTTTCTTTCTTCATTTTTTTTTTAAAAACATAATTATAGATAATGTTGCAAATATGATTATAAAAATTTGAATTACAAATAAGTGAAACTTTAGTGTTATTT

mRNA sequence

TTTAAAGAAGATCGAGAGAAATGAGCGTCAGCAATGAAATTTCCCTAATCAAGCATCCGATTCGTAAATCCAGAACCAAAACAAGACGACCCAAATTCCTCAGCTAATTTTTCCCCTGAAGATGATCCACGACCCGCCATCGCCGCCAAAGAAGCAGCTCACTCTGTTTCCCCTGCATCCGGAGAACAGCAGCAGCCTGCAGAAGTTTTTACACCAGAACGATACATGGTCGGAGCCGGAACTTGTACGGACGGCGATGAGAAGCAGAGAGAGGGAAGTGGGGGCGGAGGAGAGGTGGGTGTGTTATTCGGAAGTGGTGGAGAAGAAGGAAGCAAGAAGCACAGCGGCGGATGTATGGTTGAAGCTGGATTATGAAGGGATATTGAATGCCTGGTCGGACAAAGCTCCACTTTTCATCAATGGAGAATCGCCGCAGACAGTGCCGAATCTCCATGACGATCCATCTCTCTGCTCCGATTCTCTCCCCAATGTTAGAAATGGAATGGGAAGCGAAGGGAATAACGCGTGGAAAGTCCCAGAAATAGGGAAAGAAAGGGAAGCAAGTGTTCTGAGGTACAAAGAGAAGAGGCAGAGCCGGCTGTTTTCCAAGCGCATTCGCTATCAAGTTAGGAAGCTCAATGCTGAGAAGCGCCCAAGAATTAAGGGTCGCTTTGTGAAAAGAAGCTGAGAACGTGTGAACAAACAGTTCATTTTGGACATAAGGTCATTCTGGGAAATGCAGTCTACCCTTCTATTTTCTTTCTTCATTTTTTTTTTAAAAACATAATTATAGATAATGTTGCAAATATGATTATAAAAATTTGAATTACAAATAAGTGAAACTTTAGTGTTATTT

Coding sequence (CDS)

ATGATCCACGACCCGCCATCGCCGCCAAAGAAGCAGCTCACTCTGTTTCCCCTGCATCCGGAGAACAGCAGCAGCCTGCAGAAGTTTTTACACCAGAACGATACATGGTCGGAGCCGGAACTTGTACGGACGGCGATGAGAAGCAGAGAGAGGGAAGTGGGGGCGGAGGAGAGGTGGGTGTGTTATTCGGAAGTGGTGGAGAAGAAGGAAGCAAGAAGCACAGCGGCGGATGTATGGTTGAAGCTGGATTATGAAGGGATATTGAATGCCTGGTCGGACAAAGCTCCACTTTTCATCAATGGAGAATCGCCGCAGACAGTGCCGAATCTCCATGACGATCCATCTCTCTGCTCCGATTCTCTCCCCAATGTTAGAAATGGAATGGGAAGCGAAGGGAATAACGCGTGGAAAGTCCCAGAAATAGGGAAAGAAAGGGAAGCAAGTGTTCTGAGGTACAAAGAGAAGAGGCAGAGCCGGCTGTTTTCCAAGCGCATTCGCTATCAAGTTAGGAAGCTCAATGCTGAGAAGCGCCCAAGAATTAAGGGTCGCTTTGTGAAAAGAAGCTGA

Protein sequence

MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWVCYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKRS

Homology

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BLAST of CmoCh15G003850 vs. ExPASy Swiss-Prot
Match: Q9LU68 (Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana OX=3702 GN=CIA2 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.6e-15
Identity = 57/111 (51.35%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 80  LKLDYEGILNAWSDKAPLF---INGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAW 139
           LKLDY+G+L AWSDK   F   I G     V        L  DS      GM        
Sbjct: 337 LKLDYDGVLEAWSDKTSPFPDEIQGSEAVDVNARLAQIDLFGDS------GM-------- 396

Query: 140 KVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKR 188
                   REASVLRYKEKR++RLFSK+IRYQVRKLNA++RPR+KGRFV+R
Sbjct: 397 --------REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRR 425

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BLAST of CmoCh15G003850 vs. ExPASy Swiss-Prot
Match: Q9C9A9 (Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana OX=3702 GN=COL7 PE=2 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 4.5e-15
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 67  EKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRN 126
           E    +     ++L+LDY  +++AW +    +  G  P+ +          +  LP+V  
Sbjct: 266 EASNDKDRKTSLFLRLDYGAVISAWDNHGSPWKTGIKPECMLG-------GNTCLPHVVG 325

Query: 127 G----MGSEGNNAWKVPEIG----KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRP 186
           G    M S+G+   +    G     EREA VLRYKEKR++RLFSK+IRY+VRKLNAE+RP
Sbjct: 326 GYEKLMSSDGSVTRQQGRDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRP 385

Query: 187 RIKGRFVKRS 189
           RIKGRFVKR+
Sbjct: 386 RIKGRFVKRT 388

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BLAST of CmoCh15G003850 vs. ExPASy Swiss-Prot
Match: Q8RWD0 (Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana OX=3702 GN=COL16 PE=1 SV=2)

HSP 1 Score: 80.9 bits (198), Expect = 1.7e-14
Identity = 53/131 (40.46%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 64  EVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPN 123
           E V K +       + L+L+Y+ +++ W  + P + +GE P+   ++   P+        
Sbjct: 279 ECVVKVKEEEHKNVLMLRLNYDSVISTWGGQGPPWSSGEPPERDMDISGWPAFSM----- 338

Query: 124 VRNGMGSEGNNAWK---VPEIG---KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKR 183
           V NG  S     +    +P  G     REA V RY+EKR++RLFSK+IRY+VRKLNAEKR
Sbjct: 339 VENGGESTHQKQYVGGCLPSSGFGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKR 398

Query: 184 PRIKGRFVKRS 189
           PR+KGRFVKR+
Sbjct: 399 PRMKGRFVKRA 404

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BLAST of CmoCh15G003850 vs. ExPASy Swiss-Prot
Match: Q8LG76 (Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=COL6 PE=2 SV=2)

HSP 1 Score: 74.3 bits (181), Expect = 1.6e-12
Identity = 54/129 (41.86%), Postives = 78/129 (60.47%), Query Frame = 0


Query: 68  KKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQT--VPNLHDDPSLCSDSLPNVR 127
           K+E +  A  + L+LDYE +++ W  +         P T  VP+  D   +C  +     
Sbjct: 281 KEEKKEKA--LMLRLDYESVISTWGGQG-------IPWTARVPSEIDLDMVCFPTHTMGE 340

Query: 128 NGMGSEGNNAWK-----VPEIGK-EREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPR 187
           +G  +  +N ++     + + G   REA V RY+EKR++RLFSK+IRY+VRKLNAEKRPR
Sbjct: 341 SGAEAHHHNHFRGLGLHLGDAGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPR 400

Query: 188 IKGRFVKRS 189
           +KGRFVKRS
Sbjct: 401 MKGRFVKRS 400

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BLAST of CmoCh15G003850 vs. ExPASy Swiss-Prot
Match: Q9M9B3 (Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana OX=3702 GN=COL8 PE=1 SV=2)

HSP 1 Score: 71.2 bits (173), Expect = 1.4e-11
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 0


Query: 81  KLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAWKVPE 140
           +L+YE ++ AW  +       ESP+ V N      L    +   R               
Sbjct: 229 RLNYENVIAAWDKQ-------ESPRDVKNNTSSFQLVPPGIEEKR--------------- 288

Query: 141 IGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKRS 189
           +  EREA V RY++KR++RLF K+IRY+VRK+NA+KRPR+KGRFV+RS
Sbjct: 289 VRSEREARVWRYRDKRKNRLFEKKIRYEVRKVNADKRPRMKGRFVRRS 314

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BLAST of CmoCh15G003850 vs. ExPASy TrEMBL
Match: A0A6J1FGJ5 (zinc finger protein CONSTANS-LIKE 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111445292 PE=4 SV=1)

HSP 1 Score: 376.3 bits (965), Expect = 7.3e-101
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS
Sbjct: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRFVKRS
Sbjct: 181 KGRFVKRS 188

[Close]

BLAST of CmoCh15G003850 vs. ExPASy TrEMBL
Match: A0A6J1FLE8 (zinc finger protein CONSTANS-LIKE 7 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111445292 PE=4 SV=1)

HSP 1 Score: 370.2 bits (949), Expect = 5.3e-99
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS
Sbjct: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPN RNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPN-RNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRFVKRS
Sbjct: 181 KGRFVKRS 187

[Close]

BLAST of CmoCh15G003850 vs. ExPASy TrEMBL
Match: A0A6J1JUK4 (zinc finger protein CONSTANS-LIKE 7-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111489031 PE=4 SV=1)

HSP 1 Score: 351.3 bits (900), Expect = 2.5e-93
Identity = 179/188 (95.21%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHD PSPP+KQLTLFPLHPEN SSLQ+FLHQNDTWSE ELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDQPSPPQKQLTLFPLHPEN-SSLQRFLHQNDTWSETELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQ VPNLHDDPSL SDS
Sbjct: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQIVPNLHDDPSLYSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPNVRNG GSEGNN WKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPNVRNGFGSEGNNVWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRFVKRS
Sbjct: 181 KGRFVKRS 187

[Close]

BLAST of CmoCh15G003850 vs. ExPASy TrEMBL
Match: A0A6J1JQY7 (zinc finger protein CONSTANS-LIKE 7-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489031 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.8e-91
Identity = 178/188 (94.68%), Postives = 180/188 (95.74%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHD PSPP+KQLTLFPLHPEN SSLQ+FLHQNDTWSE ELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDQPSPPQKQLTLFPLHPEN-SSLQRFLHQNDTWSETELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQ VPNLHDDPSL SDS
Sbjct: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQIVPNLHDDPSLYSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPN RNG GSEGNN WKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPN-RNGFGSEGNNVWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRFVKRS
Sbjct: 181 KGRFVKRS 186

[Close]

BLAST of CmoCh15G003850 vs. ExPASy TrEMBL
Match: A0A0A0KR00 (CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G517810 PE=4 SV=1)

HSP 1 Score: 238.4 bits (607), Expect = 2.4e-59
Identity = 154/277 (55.60%), Postives = 168/277 (60.65%), Query Frame = 0


Query: 5   PPSPPKKQLTLFPLHPEN-----------------------SSSLQKFL--HQNDTWS-- 64
           PP PP+KQLTLFPLHPEN                         SLQ FL  +QN+  S  
Sbjct: 48  PPPPPQKQLTLFPLHPENLQVEDREDDVAFIFENDDVVSSSCCSLQSFLPCYQNEMSSEE 107

Query: 65  -------EPELVRTAMRSREREVGAEERWVCYSEVVEKK--EARSTAAD----------- 124
                  E ELVRTAMR+RERE G EE+WVCYSEVVEKK  E  STAAD           
Sbjct: 108 ESRNLVEEAELVRTAMRNRERETGVEEKWVCYSEVVEKKEEEVTSTAADEWVKKVKMMKK 167

Query: 125 ---------------VWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSL- 184
                          +WLKLDYEGILNAW DKAPLFINGESPQTVP+LHDDP LCSDSL 
Sbjct: 168 KKKKKKIKMEMIGKQLWLKLDYEGILNAWPDKAPLFINGESPQTVPDLHDDPYLCSDSLL 227

Query: 185 -PNVRNGMGSEGNNA------------WKVPEIG-----------------KEREASVLR 189
             NV +G+GSEG+N+            WKVPEIG                  +REASVLR
Sbjct: 228 SRNVMDGIGSEGHNSSNNTNNNSSSNVWKVPEIGIMKKEELILEGKEGWKMGQREASVLR 287

[Close]

BLAST of CmoCh15G003850 vs. NCBI nr
Match: XP_022939352.1 (zinc finger protein CONSTANS-LIKE 7 isoform X1 [Cucurbita moschata] >KAG7016222.1 Protein CHLOROPLAST IMPORT APPARATUS 2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 376.3 bits (965), Expect = 1.5e-100
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS
Sbjct: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRFVKRS
Sbjct: 181 KGRFVKRS 188

[Close]

BLAST of CmoCh15G003850 vs. NCBI nr
Match: XP_022939353.1 (zinc finger protein CONSTANS-LIKE 7 isoform X2 [Cucurbita moschata])

HSP 1 Score: 370.2 bits (949), Expect = 1.1e-98
Identity = 187/188 (99.47%), Postives = 187/188 (99.47%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS
Sbjct: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPN RNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPN-RNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRFVKRS
Sbjct: 181 KGRFVKRS 187

[Close]

BLAST of CmoCh15G003850 vs. NCBI nr
Match: KAG6578684.1 (Protein CHLOROPLAST IMPORT APPARATUS 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 368.6 bits (945), Expect = 3.2e-98
Identity = 184/188 (97.87%), Postives = 186/188 (98.94%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHDPPSPP+KQLTLFPLHPENSSSLQKFLHQNDTWSE ELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDPPSPPQKQLTLFPLHPENSSSLQKFLHQNDTWSETELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS
Sbjct: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPNVRNGMGSEGNNAWKVPEIGKEREAS+LRYKEKRQSRLFSKRIRYQV KLNAEKRPRI
Sbjct: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASILRYKEKRQSRLFSKRIRYQVGKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRFVKRS
Sbjct: 181 KGRFVKRS 188

[Close]

BLAST of CmoCh15G003850 vs. NCBI nr
Match: XP_023551230.1 (zinc finger protein CONSTANS-LIKE 7 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 357.5 bits (916), Expect = 7.3e-95
Identity = 178/188 (94.68%), Postives = 183/188 (97.34%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHDPPSPP+KQLTLFPLHPENSSSLQ+FLHQNDTWSE ELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDPPSPPQKQLTLFPLHPENSSSLQRFLHQNDTWSETELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEV+EKKEARSTAADVWLK+DYEGILNAWSDKAPLFINGESPQTV NLHDDPSLCSDS
Sbjct: 61  CYSEVMEKKEARSTAADVWLKMDYEGILNAWSDKAPLFINGESPQTVANLHDDPSLCSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPNVRNG+G EGNN WKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPNVRNGVGIEGNNVWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRF KRS
Sbjct: 181 KGRFGKRS 188

[Close]

BLAST of CmoCh15G003850 vs. NCBI nr
Match: XP_022992811.1 (zinc finger protein CONSTANS-LIKE 7-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 351.3 bits (900), Expect = 5.2e-93
Identity = 179/188 (95.21%), Postives = 181/188 (96.28%), Query Frame = 0


Query: 1   MIHDPPSPPKKQLTLFPLHPENSSSLQKFLHQNDTWSEPELVRTAMRSREREVGAEERWV 60
           MIHD PSPP+KQLTLFPLHPEN SSLQ+FLHQNDTWSE ELVRTAMRSREREVGAEERWV
Sbjct: 1   MIHDQPSPPQKQLTLFPLHPEN-SSLQRFLHQNDTWSETELVRTAMRSREREVGAEERWV 60

Query: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDS 120
           CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQ VPNLHDDPSL SDS
Sbjct: 61  CYSEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQIVPNLHDDPSLYSDS 120

Query: 121 LPNVRNGMGSEGNNAWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180
           LPNVRNG GSEGNN WKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI
Sbjct: 121 LPNVRNGFGSEGNNVWKVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRI 180

Query: 181 KGRFVKRS 189
           KGRFVKRS
Sbjct: 181 KGRFVKRS 187

[Close]

BLAST of CmoCh15G003850 vs. TAIR 10
Match: AT5G14370.1 (CCT motif family protein )

HSP 1 Score: 147.9 bits (372), Expect = 8.2e-36
Identity = 94/186 (50.54%), Postives = 113/186 (60.75%), Query Frame = 0


Query: 24  SSLQKFLHQNDTWSEPELVRTAMR--SREREVGAEERWVCYSEVVEKKEARSTA------ 83
           ++L  +  Q+   S   L+RTAMR  + E E   EERWV YSEVVE+  +RS        
Sbjct: 160 NNLSPYDRQDHGSSSSSLLRTAMRKGASEEEETTEERWVSYSEVVEEVMSRSGTPRCCGG 219

Query: 84  -------ADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRNGM 143
                    + LKLDYE I+ AWSDK  L+++GE PQTVP+LH      +D         
Sbjct: 220 GDGNDGRPSLALKLDYEQIMEAWSDKGTLYVDGEPPQTVPDLHASADGFND--------- 279

Query: 144 GSEGNNAWKVPEIGK-------EREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIK 188
           G E  N W VPE+          REAS+LRYKEKRQ+RLFSKRIRYQVRKLNAEKRPR+K
Sbjct: 280 GGEAGNLWAVPEMETTERLWRGHREASLLRYKEKRQNRLFSKRIRYQVRKLNAEKRPRVK 336

[Close]

BLAST of CmoCh15G003850 vs. TAIR 10
Match: AT5G57180.2 (chloroplast import apparatus 2 )

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-16
Identity = 57/111 (51.35%), Postives = 66/111 (59.46%), Query Frame = 0


Query: 80  LKLDYEGILNAWSDKAPLF---INGESPQTVPNLHDDPSLCSDSLPNVRNGMGSEGNNAW 139
           LKLDY+G+L AWSDK   F   I G     V        L  DS      GM        
Sbjct: 337 LKLDYDGVLEAWSDKTSPFPDEIQGSEAVDVNARLAQIDLFGDS------GM-------- 396

Query: 140 KVPEIGKEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPRIKGRFVKR 188
                   REASVLRYKEKR++RLFSK+IRYQVRKLNA++RPR+KGRFV+R
Sbjct: 397 --------REASVLRYKEKRRTRLFSKKIRYQVRKLNADQRPRMKGRFVRR 425

[Close]

BLAST of CmoCh15G003850 vs. TAIR 10
Match: AT1G73870.1 (B-box type zinc finger protein with CCT domain )

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-16
Identity = 55/130 (42.31%), Postives = 77/130 (59.23%), Query Frame = 0


Query: 67  EKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPNVRN 126
           E    +     ++L+LDY  +++AW +    +  G  P+ +          +  LP+V  
Sbjct: 266 EASNDKDRKTSLFLRLDYGAVISAWDNHGSPWKTGIKPECMLG-------GNTCLPHVVG 325

Query: 127 G----MGSEGNNAWKVPEIG----KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRP 186
           G    M S+G+   +    G     EREA VLRYKEKR++RLFSK+IRY+VRKLNAE+RP
Sbjct: 326 GYEKLMSSDGSVTRQQGRDGGGSDGEREARVLRYKEKRRTRLFSKKIRYEVRKLNAEQRP 385

Query: 187 RIKGRFVKRS 189
           RIKGRFVKR+
Sbjct: 386 RIKGRFVKRT 388

[Close]

BLAST of CmoCh15G003850 vs. TAIR 10
Match: AT4G25990.1 (CCT motif family protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.5e-16
Identity = 60/128 (46.88%), Postives = 77/128 (60.16%), Query Frame = 0


Query: 63  SEVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLP 122
           SEV +            LKLDY+G+L AWS K       ESP +   L  D    +D + 
Sbjct: 276 SEVTDSNPKLEQRVSPLLKLDYDGVLEAWSGK-------ESPFSDEILGSD----ADGVD 335

Query: 123 -NVRNGMGSEGNNAWKVPEIGKE--REASVLRYKEKRQSRLFSKRIRYQVRKLNAEKRPR 182
            +VR G         ++   G+   REASVLRYKEKR++RLFSK+IRYQVRKLNA++RPR
Sbjct: 336 FHVRLG---------EIDLFGESGMREASVLRYKEKRRNRLFSKKIRYQVRKLNADQRPR 383

Query: 183 IKGRFVKR 188
           +KGRFV+R
Sbjct: 396 MKGRFVRR 383

[Close]

BLAST of CmoCh15G003850 vs. TAIR 10
Match: AT1G25440.1 (B-box type zinc finger protein with CCT domain )

HSP 1 Score: 80.9 bits (198), Expect = 1.2e-15
Identity = 53/131 (40.46%), Postives = 77/131 (58.78%), Query Frame = 0


Query: 64  EVVEKKEARSTAADVWLKLDYEGILNAWSDKAPLFINGESPQTVPNLHDDPSLCSDSLPN 123
           E V K +       + L+L+Y+ +++ W  + P + +GE P+   ++   P+        
Sbjct: 279 ECVVKVKEEEHKNVLMLRLNYDSVISTWGGQGPPWSSGEPPERDMDISGWPAFSM----- 338

Query: 124 VRNGMGSEGNNAWK---VPEIG---KEREASVLRYKEKRQSRLFSKRIRYQVRKLNAEKR 183
           V NG  S     +    +P  G     REA V RY+EKR++RLFSK+IRY+VRKLNAEKR
Sbjct: 339 VENGGESTHQKQYVGGCLPSSGFGDGGREARVSRYREKRRTRLFSKKIRYEVRKLNAEKR 398

Query: 184 PRIKGRFVKRS 189
           PR+KGRFVKR+
Sbjct: 399 PRMKGRFVKRA 404

The following BLAST results are available for this feature:

BLAST of CmoCh15G003850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LU68	1.6e-15	51.35	Protein CHLOROPLAST IMPORT APPARATUS 2 OS=Arabidopsis thaliana OX=3702 GN=CIA2 P...	[more]
Q9C9A9	4.5e-15	42.31	Zinc finger protein CONSTANS-LIKE 7 OS=Arabidopsis thaliana OX=3702 GN=COL7 PE=2...	[more]
Q8RWD0	1.7e-14	40.46	Zinc finger protein CONSTANS-LIKE 16 OS=Arabidopsis thaliana OX=3702 GN=COL16 PE...	[more]
Q8LG76	1.6e-12	41.86	Zinc finger protein CONSTANS-LIKE 6 OS=Arabidopsis thaliana OX=3702 GN=COL6 PE=2...	[more]
Q9M9B3	1.4e-11	40.74	Zinc finger protein CONSTANS-LIKE 8 OS=Arabidopsis thaliana OX=3702 GN=COL8 PE=1...	[more]

BLAST of CmoCh15G003850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FGJ5	7.3e-101	100.00	zinc finger protein CONSTANS-LIKE 7 isoform X1 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1FLE8	5.3e-99	99.47	zinc finger protein CONSTANS-LIKE 7 isoform X2 OS=Cucurbita moschata OX=3662 GN=...	[more]
A0A6J1JUK4	2.5e-93	95.21	zinc finger protein CONSTANS-LIKE 7-like isoform X1 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1JQY7	1.8e-91	94.68	zinc finger protein CONSTANS-LIKE 7-like isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A0A0KR00	2.4e-59	55.60	CCT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G517810 PE=4 SV...	[more]

BLAST of CmoCh15G003850 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939352.1	1.5e-100	100.00	zinc finger protein CONSTANS-LIKE 7 isoform X1 [Cucurbita moschata] >KAG7016222....	[more]
XP_022939353.1	1.1e-98	99.47	zinc finger protein CONSTANS-LIKE 7 isoform X2 [Cucurbita moschata]	[more]
KAG6578684.1	3.2e-98	97.87	Protein CHLOROPLAST IMPORT APPARATUS 2, partial [Cucurbita argyrosperma subsp. s...	[more]
XP_023551230.1	7.3e-95	94.68	zinc finger protein CONSTANS-LIKE 7 [Cucurbita pepo subsp. pepo]	[more]
XP_022992811.1	5.2e-93	95.21	zinc finger protein CONSTANS-LIKE 7-like isoform X1 [Cucurbita maxima]	[more]

BLAST of CmoCh15G003850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G14370.1	8.2e-36	50.54	CCT motif family protein	[more]
AT5G57180.2	1.1e-16	51.35	chloroplast import apparatus 2	[more]
AT1G73870.1	3.2e-16	42.31	B-box type zinc finger protein with CCT domain	[more]
AT4G25990.1	5.5e-16	46.88	CCT motif family protein	[more]
AT1G25440.1	1.2e-15	40.46	B-box type zinc finger protein with CCT domain	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010402	CCT domain	PFAM	PF06203	CCT	coord: 145..187 e-value: 2.1E-18 score: 66.1
IPR010402	CCT domain	PROSITE	PS51017	CCT	coord: 145..187 score: 15.824634
None	No IPR available	PANTHER	PTHR31874:SF25	CCT MOTIF FAMILY PROTEIN	coord: 37..188
None	No IPR available	PANTHER	PTHR31874	CCT MOTIF FAMILY PROTEIN, EXPRESSED	coord: 37..188

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G003850.1	CmoCh15G003850.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding