![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CmoCh15G003600 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGATCTCTGTTGTTTTCGTTATGGTTTGCATCGAGTCGAATGCTTATTTTCCATTGGCAGGATTTGGTAATTTGGGGCTAATGACTTCTGTGTTGGTGGGTACTTAATACTTTAGAAAGTGAAATTTATCGTCTCCATGGACTAATTTTTTTCATAAGGAACGCCTTAAAAGTTGAGATTTATTGCAGTTGTCATCTGATGGGAAGACATTGGAAGCCGAGGCGGCTCATGGCACTGTAATGCGGCATTACCGATTACATCAAAAGGGACAAGAAACCAGTACAAATAGTATTGCCTCTATTTTTGCATGGACACGGGGCTTTGAGCATAGTATTAAAATATTGCAGGTTGTTCATGTCCACGATGGTATGATATTGTCCACTTTGTGCATAAGTTCTCATGGCTTTACTTTGGGCTTCCCAAAAAAGCCTTATACCAATGGAGAGAGTATTCCTCACTTGTAAATTCATGATCTTCTACTAAATTAACCAATGTGGGACTCACTCTCAATAATCCTCAACCGTTCGTATATATTTTTTTGTGGTTCTTGTTCCATCTAAATAGCGTTGGGAATATAGTTCTGCTTTTCACTAGAGAGAGTCACCATGACCAACCACTTTACGATTCGATACATATTCGTAATGGGGCTTTGTAGAGTAGTGTACTACCTAGAAACTGACAATTTTTAGCTGTATTTAAATGTCTTCAGGGCCAAATTAGATAA ATGATCTCTGTTGTTTTCGTTATGGTTTGCATCGAGTCGAATGCTTATTTTCCATTGGCAGGATTTGGTAATTTGGGGCTAATGACTTCTGTGTTGTTGTCATCTGATGGGAAGACATTGGAAGCCGAGGCGGCTCATGGCACTGTAATGCGGCATTACCGATTACATCAAAAGGGACAAGAAACCAGTACAAATAGTATTGCCTCTATTTTTGCATGGACACGGGGCTTTGAGCATAGTATTAAAATATTGCAGGGCCAAATTAGATAA ATGATCTCTGTTGTTTTCGTTATGGTTTGCATCGAGTCGAATGCTTATTTTCCATTGGCAGGATTTGGTAATTTGGGGCTAATGACTTCTGTGTTGTTGTCATCTGATGGGAAGACATTGGAAGCCGAGGCGGCTCATGGCACTGTAATGCGGCATTACCGATTACATCAAAAGGGACAAGAAACCAGTACAAATAGTATTGCCTCTATTTTTGCATGGACACGGGGCTTTGAGCATAGTATTAAAATATTGCAGGGCCAAATTAGATAA MISVVFVMVCIESNAYFPLAGFGNLGLMTSVLLSSDGKTLEAEAAHGTVMRHYRLHQKGQETSTNSIASIFAWTRGFEHSIKILQGQIR Homology
BLAST of CmoCh15G003600 vs. ExPASy Swiss-Prot
Match: Q8LPJ5 (Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At5g14590 PE=1 SV=1) HSP 1 Score: 114.8 bits (286), Expect = 5.1e-25 Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0
BLAST of CmoCh15G003600 vs. ExPASy Swiss-Prot
Match: Q9SRZ6 (Cytosolic isocitrate dehydrogenase [NADP] OS=Arabidopsis thaliana OX=3702 GN=CICDH PE=1 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 3.1e-22 Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0
BLAST of CmoCh15G003600 vs. ExPASy Swiss-Prot
Match: Q06197 (Isocitrate dehydrogenase [NADP] OS=Glycine max OX=3847 GN=IDH1 PE=1 SV=2) HSP 1 Score: 105.5 bits (262), Expect = 3.1e-22 Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0
BLAST of CmoCh15G003600 vs. ExPASy Swiss-Prot
Match: Q40345 (Isocitrate dehydrogenase [NADP], chloroplastic (Fragment) OS=Medicago sativa OX=3879 PE=2 SV=1) HSP 1 Score: 105.5 bits (262), Expect = 3.1e-22 Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0
BLAST of CmoCh15G003600 vs. ExPASy Swiss-Prot
Match: P50217 (Isocitrate dehydrogenase [NADP] OS=Solanum tuberosum OX=4113 GN=ICDH-1 PE=2 SV=1) HSP 1 Score: 105.1 bits (261), Expect = 4.0e-22 Identity = 50/63 (79.37%), Postives = 54/63 (85.71%), Query Frame = 0
BLAST of CmoCh15G003600 vs. ExPASy TrEMBL
Match: A0A0A0KP32 (Isocitrate dehydrogenase [NADP] OS=Cucumis sativus OX=3659 GN=Csa_5G523180 PE=3 SV=1) HSP 1 Score: 119.4 bits (298), Expect = 7.7e-24 Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 0
BLAST of CmoCh15G003600 vs. ExPASy TrEMBL
Match: A0A5A7T3K6 (Isocitrate dehydrogenase [NADP] OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00550 PE=3 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23 Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0
BLAST of CmoCh15G003600 vs. ExPASy TrEMBL
Match: A0A6J1JP31 (Isocitrate dehydrogenase [NADP] OS=Cucurbita maxima OX=3661 GN=LOC111487611 PE=3 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23 Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 0
BLAST of CmoCh15G003600 vs. ExPASy TrEMBL
Match: A0A803MWP2 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23 Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 0
BLAST of CmoCh15G003600 vs. ExPASy TrEMBL
Match: A0A6J1HH92 (Isocitrate dehydrogenase [NADP] OS=Cucurbita moschata OX=3662 GN=LOC111463463 PE=3 SV=1) HSP 1 Score: 118.6 bits (296), Expect = 1.3e-23 Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 0
BLAST of CmoCh15G003600 vs. NCBI nr
Match: XP_004142794.2 (isocitrate dehydrogenase [NADP] [Cucumis sativus] >KGN51373.1 hypothetical protein Csa_008284 [Cucumis sativus]) HSP 1 Score: 119.4 bits (298), Expect = 1.6e-23 Identity = 58/65 (89.23%), Postives = 60/65 (92.31%), Query Frame = 0
BLAST of CmoCh15G003600 vs. NCBI nr
Match: XP_023515364.1 (isocitrate dehydrogenase [NADP] [Cucurbita pepo subsp. pepo]) HSP 1 Score: 118.6 bits (296), Expect = 2.7e-23 Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 0
BLAST of CmoCh15G003600 vs. NCBI nr
Match: KAA0037553.1 (isocitrate dehydrogenase [Cucumis melo var. makuwa] >TYK03119.1 isocitrate dehydrogenase [Cucumis melo var. makuwa]) HSP 1 Score: 118.6 bits (296), Expect = 2.7e-23 Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0
BLAST of CmoCh15G003600 vs. NCBI nr
Match: XP_038890600.1 (isocitrate dehydrogenase [NADP] isoform X2 [Benincasa hispida]) HSP 1 Score: 118.6 bits (296), Expect = 2.7e-23 Identity = 57/63 (90.48%), Postives = 59/63 (93.65%), Query Frame = 0
BLAST of CmoCh15G003600 vs. NCBI nr
Match: KAG6602427.1 (Isocitrate dehydrogenase [NADP], chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 118.6 bits (296), Expect = 2.7e-23 Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 0
BLAST of CmoCh15G003600 vs. TAIR 10
Match: AT5G14590.1 (Isocitrate/isopropylmalate dehydrogenase family protein ) HSP 1 Score: 114.8 bits (286), Expect = 3.6e-26 Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 0
BLAST of CmoCh15G003600 vs. TAIR 10
Match: AT1G65930.1 (cytosolic NADP+-dependent isocitrate dehydrogenase ) HSP 1 Score: 105.5 bits (262), Expect = 2.2e-23 Identity = 50/67 (74.63%), Postives = 56/67 (83.58%), Query Frame = 0
BLAST of CmoCh15G003600 vs. TAIR 10
Match: AT1G54340.1 (isocitrate dehydrogenase ) HSP 1 Score: 103.6 bits (257), Expect = 8.4e-23 Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25 Position : 0 Zoom : x 1
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|