CmoCh15G003540 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G003540
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L12, chloroplastic-like
Location	Cmo_Chr15: 1659121 .. 1659672 (-)
RNA-Seq Expression	CmoCh15G003540
Synteny	CmoCh15G003540

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCCACACTCTCCACTCTCACCCTCCGTACCCCATCTCTCCTTTCTCATTCCCATTCCTCTTTCTCCACCCTCTCCTCCAAACCCACGACCCTCCCATTCCTATCCCACCGCACCACCCGCCTCCGCCCCATCGCCGCCGTGTCAGCCCCTGAGAAAATCGAGAAACTCGGCTCCGACATCTCCAACCTCACCCTTGAAGAGGCCCGGATTCTGGTCGACTTCCTCCAAGACAAGCTTGGGGTCTCCGCCGCTGCCTTCGCCCCTGCCGCTGTTGTGGCAGCACCTGGTGGCGTCGCAGGTGGTGACGCAGCAGCCGAGGCAGTGGAGGAGAAGACGGAATTCGATGTGGTCATTGAGGAAGTGCCTAGCAATGCCAGAATTGCAGTGATTAAGTCAGTGAGGGCACTGACAAACTTGGCTTTGAAGGAAGCTAAAGAACTCATCGAAGGTCTGCCCAAGAAATTCAAAGAAGGGGTTTCGAAAGAAGAAGCTGAGGATGCCAAGAAACAGCTCGAAGAAGCTGGAGCTAAAATCACCATTGTTTAA

mRNA sequence

ATGGCTTCCACACTCTCCACTCTCACCCTCCGTACCCCATCTCTCCTTTCTCATTCCCATTCCTCTTTCTCCACCCTCTCCTCCAAACCCACGACCCTCCCATTCCTATCCCACCGCACCACCCGCCTCCGCCCCATCGCCGCCGTGTCAGCCCCTGAGAAAATCGAGAAACTCGGCTCCGACATCTCCAACCTCACCCTTGAAGAGGCCCGGATTCTGGTCGACTTCCTCCAAGACAAGCTTGGGGTCTCCGCCGCTGCCTTCGCCCCTGCCGCTGTTGTGGCAGCACCTGGTGGCGTCGCAGGTGGTGACGCAGCAGCCGAGGCAGTGGAGGAGAAGACGGAATTCGATGTGGTCATTGAGGAAGTGCCTAGCAATGCCAGAATTGCAGTGATTAAGTCAGTGAGGGCACTGACAAACTTGGCTTTGAAGGAAGCTAAAGAACTCATCGAAGGTCTGCCCAAGAAATTCAAAGAAGGGGTTTCGAAAGAAGAAGCTGAGGATGCCAAGAAACAGCTCGAAGAAGCTGGAGCTAAAATCACCATTGTTTAA

Coding sequence (CDS)

ATGGCTTCCACACTCTCCACTCTCACCCTCCGTACCCCATCTCTCCTTTCTCATTCCCATTCCTCTTTCTCCACCCTCTCCTCCAAACCCACGACCCTCCCATTCCTATCCCACCGCACCACCCGCCTCCGCCCCATCGCCGCCGTGTCAGCCCCTGAGAAAATCGAGAAACTCGGCTCCGACATCTCCAACCTCACCCTTGAAGAGGCCCGGATTCTGGTCGACTTCCTCCAAGACAAGCTTGGGGTCTCCGCCGCTGCCTTCGCCCCTGCCGCTGTTGTGGCAGCACCTGGTGGCGTCGCAGGTGGTGACGCAGCAGCCGAGGCAGTGGAGGAGAAGACGGAATTCGATGTGGTCATTGAGGAAGTGCCTAGCAATGCCAGAATTGCAGTGATTAAGTCAGTGAGGGCACTGACAAACTTGGCTTTGAAGGAAGCTAAAGAACTCATCGAAGGTCTGCCCAAGAAATTCAAAGAAGGGGTTTCGAAAGAAGAAGCTGAGGATGCCAAGAAACAGCTCGAAGAAGCTGGAGCTAAAATCACCATTGTTTAA

Protein sequence

MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKITIV

Homology

[Close]

BLAST of CmoCh15G003540 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 213.8 bits (543), Expect = 1.7e-54
Identity = 132/192 (68.75%), Postives = 151/192 (78.65%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPF---------LSHRTTRLRPIAAVSA 60
           MA+T +  TL  PSL SH +SS      +P   PF          S RTTRLRPIAAV A
Sbjct: 1   MAATTTMATLNLPSLTSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAVEA 60

Query: 61  PEKIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVE 120
           PEKIE+LG+ +S LTLEEAR+LVD+LQDKLGVSAA+FAPAA VAAPG  A    AA AVE
Sbjct: 61  PEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPAD---AAPAVE 120

Query: 121 EKTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKK 180
           EKTEFDV I+EVPSNARI+VIK+VRALT+L LKEAKELIEGLPKK KEGVSK++AEDAKK
Sbjct: 121 EKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAKK 180

Query: 181 QLEEAGAKITIV 184
           QLE+AGAK++IV
Sbjct: 181 QLEDAGAKVSIV 189

[Close]

BLAST of CmoCh15G003540 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-51
Identity = 128/188 (68.09%), Postives = 150/188 (79.79%), Query Frame = 0


Query: 1   MASTLSTLTLR--TPSLLSHSHSSF----STLSSKPTTLPFLSHRTTRLRPIAAVSAPEK 60
           MASTLST+TLR  +PS  + +H+S      TL     T    + R T LRP+AAV APEK
Sbjct: 1   MASTLSTITLRSPSPSTATSTHASIPFPKKTLEFPIRTPKLQNRRATFLRPLAAVEAPEK 60

Query: 61  IEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKT 120
           + +LG +ISNLTL +A+ LV++LQDKLGV+AA+FAPAAVVAAPG  A    A   VEEKT
Sbjct: 61  VVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA---EAPAVVEEKT 120

Query: 121 EFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLE 180
           EFDVVI+EVPSNARIA IK+VRALT+LALKEAKELIEGLPKKFKEGVSK+EAEDAKKQLE
Sbjct: 121 EFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLE 180

Query: 181 EAGAKITI 183
           EAGAK++I
Sbjct: 181 EAGAKVSI 185

[Close]

BLAST of CmoCh15G003540 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 203.8 bits (517), Expect = 1.7e-51
Identity = 129/188 (68.62%), Postives = 149/188 (79.26%), Query Frame = 0


Query: 1   MASTLSTLTLR--TPSLLSHSHSSF---STLSSKPTTLPFLSH-RTTRLRPIAAVSAPEK 60
           MASTLST+TLR  +PS  S +H+S          P   P L H R T LRP+AAV APEK
Sbjct: 1   MASTLSTITLRSPSPSTASSTHASIPFPKKALEFPIRTPKLHHRRATFLRPLAAVEAPEK 60

Query: 61  IEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKT 120
           + +LG +ISNLTL +A+ LV++LQDKLGV+AA+FAPAAV AAPG  A    A   VEEKT
Sbjct: 61  VVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA---EAPAVVEEKT 120

Query: 121 EFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLE 180
           EFDVVI+EVPSNARIA IK+VRALT+LALKEAKELIEGLPKKFKEGVSK+EAEDAKKQLE
Sbjct: 121 EFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLE 180

Query: 181 EAGAKITI 183
           EAGAK++I
Sbjct: 181 EAGAKVSI 185

[Close]

BLAST of CmoCh15G003540 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 9.8e-47
Identity = 123/194 (63.40%), Postives = 147/194 (75.77%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPF-----------LSHRTTRLRPIAAV 60
           MAST  ++     S    + +S +   S+ TT+ F           L+HR T LRPIAAV
Sbjct: 1   MASTTLSIATTIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAAV 60

Query: 61  SAPEKIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAP-AAVVAAPGGVAGGDAAAE 120
            APEKIEK+GS+IS+LTLEEARILVD+LQDK GVS  + AP AA VAAP   A G AAA 
Sbjct: 61  EAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP---ADGGAAA- 120

Query: 121 AVEEKTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAED 180
            VEE+TEFDVVI EVPS++RIAVIK+VRALT+LALKEAKELIEGLPKKFKEG++K+EAE+
Sbjct: 121 VVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 180

Query: 181 AKKQLEEAGAKITI 183
           AKK LEEAGAK++I
Sbjct: 181 AKKTLEEAGAKVSI 190

[Close]

BLAST of CmoCh15G003540 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-46
Identity = 127/192 (66.15%), Postives = 148/192 (77.08%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFST--LSSKPTTLPF-------LSHRTTRLRPIAAVSA 60
           MAST  TL++ T    S   +S ST    SKPT + F        SHR   LRPI+AV A
Sbjct: 1   MAST--TLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSSSHRAINLRPISAVEA 60

Query: 61  PEKIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAP-AAVVAAPGGVAGGDAAAEAV 120
           PEKIEK+GS+IS+LTLEEARILVD+LQDK GVS  + AP AA VAAP   A G AAA  V
Sbjct: 61  PEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP---ADGGAAA-VV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAK 180
           EE+TEFDVVI EVPS++RIAVIK+VRALT+LALKEAKELIEGLPKKFKEG++K+EAE+AK
Sbjct: 121 EEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAK 180

Query: 181 KQLEEAGAKITI 183
           K LEEAGAK++I
Sbjct: 181 KTLEEAGAKVSI 186

[Close]

BLAST of CmoCh15G003540 vs. ExPASy TrEMBL
Match: A0A6J1FMH9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111445547 PE=3 SV=1)

HSP 1 Score: 320.5 bits (820), Expect = 4.6e-84
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS 60
           MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS 60

Query: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120
           DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI
Sbjct: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120

Query: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180
           EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI
Sbjct: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180

Query: 181 TIV 184
           TIV
Sbjct: 181 TIV 183

[Close]

BLAST of CmoCh15G003540 vs. ExPASy TrEMBL
Match: A0A6J1JTI3 (50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111489595 PE=3 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 3.3e-82
Identity = 180/183 (98.36%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS 60
           MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPF SHR TRLRPIAAVSAPEKIEKLGS
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFPSHRATRLRPIAAVSAPEKIEKLGS 60

Query: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120
           DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGD AAEAVEEKTEFDVVI
Sbjct: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDVAAEAVEEKTEFDVVI 120

Query: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180
           EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI
Sbjct: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180

Query: 181 TIV 184
           TIV
Sbjct: 181 TIV 183

[Close]

BLAST of CmoCh15G003540 vs. ExPASy TrEMBL
Match: A0A0A0KSG5 (SocL12 (Chloroplast ribosomal protein) OS=Cucumis sativus OX=3659 GN=Csa_5G524750 PE=3 SV=1)

HSP 1 Score: 271.6 bits (693), Expect = 2.5e-69
Identity = 158/183 (86.34%), Postives = 167/183 (91.26%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS 60
           MAS+LSTLTL TP  L  SHSSFS LS +PTTL F   R T LRPIAAVSAPEKIEKLGS
Sbjct: 1   MASSLSTLTLNTPLHLPRSHSSFSPLSFRPTTLQFPYRRPTHLRPIAAVSAPEKIEKLGS 60

Query: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120
           DIS+LTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGG  GG+AAAEAVEEKTEFDVVI
Sbjct: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGEAAAEAVEEKTEFDVVI 120

Query: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180
           E+VPSNARIAVIKSVRA+T+LALKEAKELIEGLPKKFKEGVSKEEA+DAKKQLEEAGAKI
Sbjct: 121 EDVPSNARIAVIKSVRAMTSLALKEAKELIEGLPKKFKEGVSKEEADDAKKQLEEAGAKI 180

Query: 181 TIV 184
            IV
Sbjct: 181 AIV 183

[Close]

BLAST of CmoCh15G003540 vs. ExPASy TrEMBL
Match: A0A5A7T262 (50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold808G001220 PE=3 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.1e-68
Identity = 158/183 (86.34%), Postives = 166/183 (90.71%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS 60
           MAS+LSTLTL TP  LS+SHS FS  S + TTL F   R T LRPIAAVSAPEKIEKLGS
Sbjct: 1   MASSLSTLTLNTPFPLSYSHSKFSPHSFRSTTLHFPYRRATLLRPIAAVSAPEKIEKLGS 60

Query: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120
           DIS+LTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPGG  GGDAAAEAVEEKTEFDVVI
Sbjct: 61  DISSLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGGAVGGDAAAEAVEEKTEFDVVI 120

Query: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180
           E+VPSNARIAVIK+VRALT+LALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI
Sbjct: 121 EDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180

Query: 181 TIV 184
            IV
Sbjct: 181 AIV 183

[Close]

BLAST of CmoCh15G003540 vs. ExPASy TrEMBL
Match: A0A6J1BXR2 (50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111006430 PE=3 SV=1)

HSP 1 Score: 267.7 bits (683), Expect = 3.6e-68
Identity = 160/191 (83.77%), Postives = 168/191 (87.96%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSK--------PTTLPFLSHRTTRLRPIAAVSAP 60
           MASTLSTLTLR+PS LSHS  S ST SSK        P++   +SHR T LRPIAAVSAP
Sbjct: 1   MASTLSTLTLRSPSYLSHSPRSISTHSSKSAVQFPFYPSSAAAISHRATLLRPIAAVSAP 60

Query: 61  EKIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEE 120
           EKIEKLGSDISNLTLEEAR+LVDFLQDKLGVSAAAFAPAAVVAAPG    GDAAAEAVEE
Sbjct: 61  EKIEKLGSDISNLTLEEARLLVDFLQDKLGVSAAAFAPAAVVAAPGAAGAGDAAAEAVEE 120

Query: 121 KTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180
           KTEFDVVIE+VPSNARIAVIK+VRALT+LALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEDVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQ 180

Query: 181 LEEAGAKITIV 184
           LEEAGAKI IV
Sbjct: 181 LEEAGAKIAIV 191

[Close]

BLAST of CmoCh15G003540 vs. NCBI nr
Match: XP_022939763.1 (50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 320.5 bits (820), Expect = 9.6e-84
Identity = 183/183 (100.00%), Postives = 183/183 (100.00%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS 60
           MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS 60

Query: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120
           DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI
Sbjct: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120

Query: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180
           EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI
Sbjct: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180

Query: 181 TIV 184
           TIV
Sbjct: 181 TIV 183

[Close]

BLAST of CmoCh15G003540 vs. NCBI nr
Match: XP_023551095.1 (50S ribosomal protein L12, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 314.7 bits (805), Expect = 5.3e-82
Identity = 180/183 (98.36%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS 60
           MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPF SHR TRLRPIAAVSAPEKIEKLGS
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFPSHRATRLRPIAAVSAPEKIEKLGS 60

Query: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120
           DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI
Sbjct: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120

Query: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180
           EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSK+EAEDAKKQLEEAGAKI
Sbjct: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKI 180

Query: 181 TIV 184
           TIV
Sbjct: 181 TIV 183

[Close]

BLAST of CmoCh15G003540 vs. NCBI nr
Match: XP_022993672.1 (50S ribosomal protein L12, chloroplastic [Cucurbita maxima])

HSP 1 Score: 314.3 bits (804), Expect = 6.9e-82
Identity = 180/183 (98.36%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS 60
           MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPF SHR TRLRPIAAVSAPEKIEKLGS
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFPSHRATRLRPIAAVSAPEKIEKLGS 60

Query: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120
           DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGD AAEAVEEKTEFDVVI
Sbjct: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDVAAEAVEEKTEFDVVI 120

Query: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180
           EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI
Sbjct: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180

Query: 181 TIV 184
           TIV
Sbjct: 181 TIV 183

[Close]

BLAST of CmoCh15G003540 vs. NCBI nr
Match: KAG6578656.1 (50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 313.2 bits (801), Expect = 1.5e-81
Identity = 179/183 (97.81%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS 60
           MASTLSTLTLRTPSLLSHSHSSFSTLS KPTTLPF SHR TRLRPIAAVSAPEKIEKLGS
Sbjct: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSFKPTTLPFASHRATRLRPIAAVSAPEKIEKLGS 60

Query: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120
           DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI
Sbjct: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120

Query: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180
           EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSK+EAEDAKKQLEEAGAKI
Sbjct: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKI 180

Query: 181 TIV 184
           TIV
Sbjct: 181 TIV 183

[Close]

BLAST of CmoCh15G003540 vs. NCBI nr
Match: KAG7016197.1 (Monodehydroascorbate reductase 4, peroxisomal, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 313.2 bits (801), Expect = 1.5e-81
Identity = 179/183 (97.81%), Postives = 180/183 (98.36%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPFLSHRTTRLRPIAAVSAPEKIEKLGS 60
           MASTLSTLTLRTPSLLSHSHSSFSTLS KPTTLPF SHR TRLRPIAAVSAPEKIEKLGS
Sbjct: 471 MASTLSTLTLRTPSLLSHSHSSFSTLSFKPTTLPFASHRATRLRPIAAVSAPEKIEKLGS 530

Query: 61  DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 120
           DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI
Sbjct: 531 DISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAVEEKTEFDVVI 590

Query: 121 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKI 180
           EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSK+EAEDAKKQLEEAGAKI
Sbjct: 591 EEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQLEEAGAKI 650

Query: 181 TIV 184
           TIV
Sbjct: 651 TIV 653

[Close]

BLAST of CmoCh15G003540 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 188.0 bits (476), Expect = 6.9e-48
Identity = 123/194 (63.40%), Postives = 147/194 (75.77%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPF-----------LSHRTTRLRPIAAV 60
           MAST  ++     S    + +S +   S+ TT+ F           L+HR T LRPIAAV
Sbjct: 1   MASTTLSIATTIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIAAV 60

Query: 61  SAPEKIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAP-AAVVAAPGGVAGGDAAAE 120
            APEKIEK+GS+IS+LTLEEARILVD+LQDK GVS  + AP AA VAAP   A G AAA 
Sbjct: 61  EAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP---ADGGAAA- 120

Query: 121 AVEEKTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAED 180
            VEE+TEFDVVI EVPS++RIAVIK+VRALT+LALKEAKELIEGLPKKFKEG++K+EAE+
Sbjct: 121 VVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 180

Query: 181 AKKQLEEAGAKITI 183
           AKK LEEAGAK++I
Sbjct: 181 AKKTLEEAGAKVSI 190

[Close]

BLAST of CmoCh15G003540 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 187.6 bits (475), Expect = 9.1e-48
Identity = 127/192 (66.15%), Postives = 148/192 (77.08%), Query Frame = 0


Query: 1   MASTLSTLTLRTPSLLSHSHSSFST--LSSKPTTLPF-------LSHRTTRLRPIAAVSA 60
           MAST  TL++ T    S   +S ST    SKPT + F        SHR   LRPI+AV A
Sbjct: 1   MAST--TLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSSSHRAINLRPISAVEA 60

Query: 61  PEKIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAP-AAVVAAPGGVAGGDAAAEAV 120
           PEKIEK+GS+IS+LTLEEARILVD+LQDK GVS  + AP AA VAAP   A G AAA  V
Sbjct: 61  PEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVAAP---ADGGAAA-VV 120

Query: 121 EEKTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAK 180
           EE+TEFDVVI EVPS++RIAVIK+VRALT+LALKEAKELIEGLPKKFKEG++K+EAE+AK
Sbjct: 121 EEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAK 180

Query: 181 KQLEEAGAKITI 183
           K LEEAGAK++I
Sbjct: 181 KTLEEAGAKVSI 186

[Close]

BLAST of CmoCh15G003540 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 155.2 bits (391), Expect = 5.0e-38
Identity = 102/193 (52.85%), Postives = 130/193 (67.36%), Query Frame = 0


Query: 2   ASTLSTLTLRTPSLLSHSHSSFSTLSSKPTTLPF-----------LSHRTTRLRPIAAVS 61
           A+TLS  T    S  S   +S     S+P ++ F           LSHR   L PI+AV 
Sbjct: 3   ATTLSIATTIRSSSFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVK 62

Query: 62  APEKIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFAPAAVVAAPGGVAGGDAAAEAV 121
            P+KI+K+GS+IS+LTLEE+RILVD++QDK GVS    APAA    P    GG  A  +V
Sbjct: 63  TPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGG--ATASV 122

Query: 122 EEKTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEAEDAK 181
           E +T FDVVI +VP   RIAVI ++RA+T+L+L E+KELIEG PKKFKEGV+K+EAE+ K
Sbjct: 123 ERQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDK 182

Query: 182 KQLEEAGAKITIV 184
            QLEEAGAK++IV
Sbjct: 183 TQLEEAGAKVSIV 193

[Close]

BLAST of CmoCh15G003540 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 80.1 bits (196), Expect = 2.0e-15
Identity = 55/136 (40.44%), Postives = 81/136 (59.56%), Query Frame = 0


Query: 53  EKIEKLGSDISNLTLEEARILVDFLQDKLGVS----AAAFAPAAVVAAPGG--VAGGDAA 112
           E + K+ +++SNLTL E   L + L+ KL +S     AA  P   +   G    AGG+  
Sbjct: 43  ENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGEGK 102

Query: 113 AEAVEEKTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKELIEGLPKKFKEGVSKEEA 172
            +  E KT FDV+++   + ++I VIK VR +T L LKEAK+L+E  P   K+GVSKEEA
Sbjct: 103 EKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEA 162

Query: 173 EDAKKQLEEAGAKITI 183
           E   ++L+  GAK+ +
Sbjct: 163 EKIIEKLKAVGAKVAM 178

[Close]

BLAST of CmoCh15G003540 vs. TAIR 10
Match: AT4G37660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.8e-12
Identity = 57/154 (37.01%), Postives = 83/154 (53.90%), Query Frame = 0


Query: 38  HRTTRL----RPIAAVSAPE----KIEKLGSDISNLTLEEARILVDFLQDKLGVSAAAFA 97
           HRTT L    R + AV++PE    K+E++  D+  L   E          K+G++    A
Sbjct: 17  HRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSA 76

Query: 98  PAAVVAAPGGVAGGDAAAEA-VEEKTEFDVVIEEVPSNARIAVIKSVRALTNLALKEAKE 157
               VA  G V    A+ E    EKT FDV +E+  + ++I VIK +RA T+L LKEAK 
Sbjct: 77  ----VAVTGSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKA 136

Query: 158 LIEGLPKKFKEGVSKEEAEDAKKQLEEAGAKITI 183
           L+E  P   K G++KEEAE   ++L+  GA + +
Sbjct: 137 LVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVAL 166

The following BLAST results are available for this feature:

BLAST of CmoCh15G003540 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P02398	1.7e-54	68.75	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36688	1.0e-51	68.09	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P24929	1.7e-51	68.62	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P36210	9.8e-47	63.40	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36212	1.3e-46	66.15	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of CmoCh15G003540 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1FMH9	4.6e-84	100.00	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1JTI3	3.3e-82	98.36	50S ribosomal protein L12, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A0A0KSG5	2.5e-69	86.34	SocL12 (Chloroplast ribosomal protein) OS=Cucumis sativus OX=3659 GN=Csa_5G52475...	[more]
A0A5A7T262	2.1e-68	86.34	50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A6J1BXR2	3.6e-68	83.77	50S ribosomal protein L12, chloroplastic-like OS=Momordica charantia OX=3673 GN=...	[more]

BLAST of CmoCh15G003540 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022939763.1	9.6e-84	100.00	50S ribosomal protein L12, chloroplastic-like [Cucurbita moschata]	[more]
XP_023551095.1	5.3e-82	98.36	50S ribosomal protein L12, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022993672.1	6.9e-82	98.36	50S ribosomal protein L12, chloroplastic [Cucurbita maxima]	[more]
KAG6578656.1	1.5e-81	97.81	50S ribosomal protein L12, chloroplastic, partial [Cucurbita argyrosperma subsp....	[more]
KAG7016197.1	1.5e-81	97.81	Monodehydroascorbate reductase 4, peroxisomal, partial [Cucurbita argyrosperma s...	[more]

BLAST of CmoCh15G003540 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27830.1	6.9e-48	63.40	ribosomal protein L12-A	[more]
AT3G27850.1	9.1e-48	66.15	ribosomal protein L12-C	[more]
AT3G27840.1	5.0e-38	52.85	ribosomal protein L12-B	[more]
AT4G36420.1	2.0e-15	40.44	Ribosomal protein L12 family protein	[more]
AT4G37660.1	2.8e-12	37.01	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 54..102 e-value: 4.6E-13 score: 48.6
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 116..182 e-value: 2.0E-24 score: 85.7
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 54..182 e-value: 2.2E-32 score: 110.1
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..182
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 50..183 score: 22.456055
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 53..182 e-value: 9.72154E-40 score: 129.583
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 112..182 e-value: 6.6E-26 score: 92.2
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 111..182
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 54..111 e-value: 1.5E-13 score: 52.5
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 54..118
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..182

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G003540.1	CmoCh15G003540.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome