CmoCh15G003390 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G003390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	E3 ubiquitin-protein ligase ATL4-like
Location	Cmo_Chr15: 1581401 .. 1582376 (-)
RNA-Seq Expression	CmoCh15G003390
Synteny	CmoCh15G003390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTATCGTATCCCTGATACTCATACTTCTGGGAATTGCCATTTTGGTGTTGATTAACGTGTGGATAGTTGGGAGAGCATTGAGGGGAGGGTTTGAAAATGAAACGACGACTGTGGGAAGAAGCAACAACAATAACGGGGAAGCAACAGGCTGCATGCGCAGAGATGACTTGGAGAAGCTTCCTTGCTTTCAATATATGGCTATGGAGGAACCAATGGGCAGCCCTGTGGATTGTGCAGTTTGCTTGGGGAAATTCCAGATGGGCGAGAAGTGCAGGCTGTTGCCTATTTGCAAGCACAGCTTCCACGCTCAGTGCGTTGATGAGTGGCTTTTGCTGACTCCTGCTTGCCCCATTTGTCGAACAAGCACTCTTGAGTCTCTAAAAGGAGCTGATGTAGATGAAAGATCATGAACGATAACGTTTCAACCGTTTGGTGAGTCGAAAATCAAACCCTTCTAATGATAGTTAGTATCTTCAACACTACTTGAGTTATGTTTTCGGCTCGAAAATACTCGTTAATCAGCACTTCATATGACTTAGGCAAGAGCACATTTTATTCTTTTGACGAAAAGAAAACGGTGAAGAACACGTGTTATGTCGTAGAATCAATAAGGCTTAAAAATGTTAGAACATGATTGAATTCATTGTATTTGAACTGATGCGTCCCTGCTTAAGCTTATATAATTGCTGTTTGTTAATGACTCTAATTCTTTCTTTGTTGGTGAAGAACAAAGAGAACTGCTGGTTTGTTCCTCTCCCCACCTGACCAATGAAACAGGGAAGGCATTAAATGAGGGCTGCCATAGAAAGATGACAAAAGGGCTGGCTAGAAGTCACTGCTGGCCATGGTGGCTGTCTGGCTGGCTGCCTGGCTGCCTTCCAACCTCGAACTCATCAGCTCATCAGCTCATCAGGAATAAGTACTCCAAAGCCAAAGAGTAAAGACAGAGACACAGCCAAGAAATACTGA

mRNA sequence

ATGGAGCTTATCGTATCCCTGATACTCATACTTCTGGGAATTGCCATTTTGGTGTTGATTAACGTGTGGATAGTTGGGAGAGCATTGAGGGGAGGGTTTGAAAATGAAACGACGACTGTGGGAAGAAGCAACAACAATAACGGGGAAGCAACAGGCTGCATGCGCAGAGATGACTTGGAGAAGCTTCCTTGCTTTCAATATATGGCTATGGAGGAACCAATGGGCAGCCCTGTGGATTGTGCAGTTTGCTTGGGGAAATTCCAGATGGGCGAGAAGTGCAGGCTGTTGCCTATTTGCAAGCACAGCTTCCACGCTCAGTGCGTTGATGAGTGGCTTTTGCTGACTCCTGCTTGCCCCATTTGTCGAACAAGCACTCTTGAGTCTCTAAAAGGAGCTGATGGCTGGCTAGAAGTCACTGCTGGCCATGGTGGCTGTCTGGCTGGCTGCCTGGCTGCCTTCCAACCTCGAACTCATCAGCTCATCAGCTCATCAGGAATAAGTACTCCAAAGCCAAAGAGTAAAGACAGAGACACAGCCAAGAAATACTGA

Coding sequence (CDS)

ATGGAGCTTATCGTATCCCTGATACTCATACTTCTGGGAATTGCCATTTTGGTGTTGATTAACGTGTGGATAGTTGGGAGAGCATTGAGGGGAGGGTTTGAAAATGAAACGACGACTGTGGGAAGAAGCAACAACAATAACGGGGAAGCAACAGGCTGCATGCGCAGAGATGACTTGGAGAAGCTTCCTTGCTTTCAATATATGGCTATGGAGGAACCAATGGGCAGCCCTGTGGATTGTGCAGTTTGCTTGGGGAAATTCCAGATGGGCGAGAAGTGCAGGCTGTTGCCTATTTGCAAGCACAGCTTCCACGCTCAGTGCGTTGATGAGTGGCTTTTGCTGACTCCTGCTTGCCCCATTTGTCGAACAAGCACTCTTGAGTCTCTAAAAGGAGCTGATGGCTGGCTAGAAGTCACTGCTGGCCATGGTGGCTGTCTGGCTGGCTGCCTGGCTGCCTTCCAACCTCGAACTCATCAGCTCATCAGCTCATCAGGAATAAGTACTCCAAAGCCAAAGAGTAAAGACAGAGACACAGCCAAGAAATACTGA

Protein sequence

MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPICRTSTLESLKGADGWLEVTAGHGGCLAGCLAAFQPRTHQLISSSGISTPKPKSKDRDTAKKY

Homology

[Close]

BLAST of CmoCh15G003390 vs. ExPASy Swiss-Prot
Match: Q7X843 (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 8.3e-14
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 59  LEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPAC 118
           ++ LP F Y  +   +  P DCAVCL +F   +K RLLP+C H+FH  C+D WLL    C
Sbjct: 186 IDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTC 245

Query: 119 PICRTS 125
           P+CR S
Sbjct: 246 PLCRRS 251

[Close]

BLAST of CmoCh15G003390 vs. ExPASy Swiss-Prot
Match: Q5EAE9 (RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 2.7e-12
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 31  GGFENETTTVGRSNNNNGEATGCMRRDDLEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMG 90
           GG+ N    VG   N+       + R  +E LP F++ A+       ++CAVCL +F+  
Sbjct: 104 GGYYNGGGVVGGRKNSG------IDRSVIESLPVFRFGALSGHKDG-LECAVCLARFEPT 163

Query: 91  EKCRLLPICKHSFHAQCVDEWLLLTPACPICR 123
           E  RLLP CKH+FH +CVD WL     CP+CR
Sbjct: 164 EVLRLLPKCKHAFHVECVDTWLDAHSTCPLCR 188

[Close]

BLAST of CmoCh15G003390 vs. ExPASy Swiss-Prot
Match: Q940Q4 (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-12
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 3   LIVSLILILLGIA-ILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLEK 62
           +I+S+I  + G+  +LV   +    R     F+N T   G+           + +  ++ 
Sbjct: 56  IILSIIFFISGLLHLLVRFLLTPSSRDREDYFDNVTALQGQLQQLFHLHDSGVDQSFIDT 115

Query: 63  LPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPIC 122
           LP F Y ++      P DCAVCL +F+  +K RLLP C H+FH  C+D WLL    CP+C
Sbjct: 116 LPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLC 175

Query: 123 RTSTLESL 130
           R+S L  L
Sbjct: 176 RSSLLSDL 183

[Close]

BLAST of CmoCh15G003390 vs. ExPASy Swiss-Prot
Match: Q9SG96 (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.9e-12
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 34  ENETTTVGRSNNNNGE---ATGCMRRDDLEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMG 93
           +++ +    +N N G    ATG +++  L+++P   Y +    M    +C +CLG F+ G
Sbjct: 67  DDQVSNASNANANLGRLAAATG-LKKQALKQIPVGLYGSGIIDM-KATECLICLGDFEDG 126

Query: 94  EKCRLLPICKHSFHAQCVDEWLLLTPACPICRTSTL 127
           EK R+LP C H FH +C+D WLL   +CP CR S L
Sbjct: 127 EKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLL 160

[Close]

BLAST of CmoCh15G003390 vs. ExPASy Swiss-Prot
Match: Q9M0R4 (Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana OX=3702 GN=ATL37 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.9e-11
Identity = 41/127 (32.28%), Postives = 63/127 (49.61%), Query Frame = 0


Query: 11  LLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLEKLPCFQYMAM 70
           ++GI +L L  + +V   L  G   E    G     +      + +D +E  P F Y  +
Sbjct: 49  IIGIVLLSLFLLLLVVYCLNYGCCIEENETGGHEVLHSRVRRGIDKDVIESFPAFLYSEV 108

Query: 71  E--EPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPICRTSTLES 130
           +  +     V+CA+CL +F+  E  R +P C H+FHA C+DEWL     CP+CR +   S
Sbjct: 109 KAFKIGNGGVECAICLCEFEDEEPLRWMPPCSHTFHANCIDEWLSSRSTCPVCRANL--S 168

Query: 131 LKGADGW 136
           LK  D +
Sbjct: 169 LKSGDSF 173

[Close]

BLAST of CmoCh15G003390 vs. ExPASy TrEMBL
Match: A0A6J1BYM3 (E3 ubiquitin-protein ligase ATL4-like OS=Momordica charantia OX=3673 GN=LOC111006656 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.0e-43
Identity = 95/134 (70.90%), Postives = 112/134 (83.58%), Query Frame = 0


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M ++VS+ LIL+ I ILVLI+V IV RALR GFENE T      +NNG+A+ C  RDDLE
Sbjct: 1   MAVMVSVTLILVAILILVLIHVCIVVRALRRGFENEIT------SNNGDASMC--RDDLE 60

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLPCF++MAMEE  GSPVDCAVCLGKF+MG+KCR+LP+CKHSFHA+CVDEWLL+TP CPI
Sbjct: 61  KLPCFEFMAMEERNGSPVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPI 120

Query: 121 CRTSTLESLKGADG 135
           CRT+TLESLKG  G
Sbjct: 121 CRTNTLESLKGCGG 126

[Close]

BLAST of CmoCh15G003390 vs. ExPASy TrEMBL
Match: M5WUQ4 (RING-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_3G282900 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 77/131 (58.78%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 1   MELIVSLILILLGIAILVLINVWIVGRAL-RGGFENETTTVGRSNNNNGEATGCMRRDDL 60
           M +  S+IL+ +GI  L+L++VWIVGRA  RGGF N +     S+      T  M +DDL
Sbjct: 1   MAIFFSVILLFVGIGFLILVHVWIVGRAFRRGGFGNGSMVAMASSTG---GTASMSKDDL 60

Query: 61  EKLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACP 120
           EKLP F Y+A  +  GSPVDCAVCL  F+MGEKCRLLP+CKHSFHAQCVD WLL TP CP
Sbjct: 61  EKLPSFDYVANWDKPGSPVDCAVCLDSFKMGEKCRLLPLCKHSFHAQCVDAWLLRTPICP 120

Query: 121 ICRTSTLESLK 131
           ICR+ T E  K
Sbjct: 121 ICRSRTAEPQK 128

[Close]

BLAST of CmoCh15G003390 vs. ExPASy TrEMBL
Match: A0A438EFR3 (Putative RING-H2 finger protein ATL49 OS=Vitis vinifera OX=29760 GN=ATL49_0 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 75/124 (60.48%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M +++SLIL+ LGI +LV+I+V IVGRA RGGF N     GR        +  M  DDL+
Sbjct: 15  MAIVISLILLFLGIGVLVIIHVCIVGRAFRGGFGN-----GRMVERGNPRSTSMSLDDLD 74

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLPCF + A E+   SPVDCAVCL  F+MG+KCRLLP+C HSFHAQCVD WLL TP CPI
Sbjct: 75  KLPCFHFQAKEKGSSSPVDCAVCLDNFKMGDKCRLLPLCNHSFHAQCVDSWLLKTPICPI 133

Query: 121 CRTS 125
           CRTS
Sbjct: 135 CRTS 133

[Close]

BLAST of CmoCh15G003390 vs. ExPASy TrEMBL
Match: A0A438JIH1 (Putative RING-H2 finger protein ATL49 OS=Vitis vinifera OX=29760 GN=ATL49_1 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 75/124 (60.48%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M +++SLIL+ LGI +LV+I+V IVGRA RGGF N     GR        +  M  DDL+
Sbjct: 15  MAIVISLILLFLGIGVLVIIHVCIVGRAFRGGFGN-----GRMVERGNPRSTSMSLDDLD 74

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLPCF + A E+   SPVDCAVCL  F+MG+KCRLLP+C HSFHAQCVD WLL TP CPI
Sbjct: 75  KLPCFHFQAKEKGSSSPVDCAVCLDNFKMGDKCRLLPLCNHSFHAQCVDSWLLKTPICPI 133

Query: 121 CRTS 125
           CRTS
Sbjct: 135 CRTS 133

[Close]

BLAST of CmoCh15G003390 vs. ExPASy TrEMBL
Match: A0A5N6QVF9 (RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_007437 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 8.3e-33
Identity = 78/131 (59.54%), Postives = 90/131 (68.70%), Query Frame = 0


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M +I+S+ L+  GI +L+LI+V IVGRA R GF N T             +  M RDDL+
Sbjct: 16  MAIILSVTLLFGGIVVLLLIHVCIVGRASRRGFSNGTMV-----ERGSAGSTSMSRDDLD 75

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLPC+ Y A EE   SPVDCAVCL  F+MG+KCRLLP CKHSFHAQCVD WLL TP CPI
Sbjct: 76  KLPCYDYRANEERSSSPVDCAVCLENFKMGDKCRLLPTCKHSFHAQCVDAWLLKTPICPI 135

Query: 121 CRTSTLESLKG 132
           CRTS  ES KG
Sbjct: 136 CRTSCAESWKG 141

[Close]

BLAST of CmoCh15G003390 vs. NCBI nr
Match: KAG6578641.1 (putative RING-H2 finger protein ATL50, partial [Cucurbita argyrosperma subsp. sororia] >KAG7016181.1 putative RING-H2 finger protein ATL49, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 270.4 bits (690), Expect = 1.1e-68
Identity = 133/133 (100.00%), Postives = 133/133 (100.00%), Query Frame = 0


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE
Sbjct: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI
Sbjct: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120

Query: 121 CRTSTLESLKGAD 134
           CRTSTLESLKGAD
Sbjct: 121 CRTSTLESLKGAD 133

[Close]

BLAST of CmoCh15G003390 vs. NCBI nr
Match: XP_023551528.1 (RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 265.4 bits (677), Expect = 3.6e-67
Identity = 130/134 (97.01%), Postives = 131/134 (97.76%), Query Frame = 0


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           MELIVSLILILLGIAILVLINVWIVGRALRGGFENE TTVGRS+NNNGEATGCMRRDDLE
Sbjct: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENEATTVGRSSNNNGEATGCMRRDDLE 60

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI
Sbjct: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120

Query: 121 CRTSTLESLKGADG 135
           CRTSTL SLKG DG
Sbjct: 121 CRTSTLNSLKGVDG 134

[Close]

BLAST of CmoCh15G003390 vs. NCBI nr
Match: XP_022134384.1 (E3 ubiquitin-protein ligase ATL4-like [Momordica charantia])

HSP 1 Score: 186.4 bits (472), Expect = 2.2e-43
Identity = 95/134 (70.90%), Postives = 112/134 (83.58%), Query Frame = 0


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M ++VS+ LIL+ I ILVLI+V IV RALR GFENE T      +NNG+A+ C  RDDLE
Sbjct: 1   MAVMVSVTLILVAILILVLIHVCIVVRALRRGFENEIT------SNNGDASMC--RDDLE 60

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLPCF++MAMEE  GSPVDCAVCLGKF+MG+KCR+LP+CKHSFHA+CVDEWLL+TP CPI
Sbjct: 61  KLPCFEFMAMEERNGSPVDCAVCLGKFEMGDKCRMLPLCKHSFHARCVDEWLLVTPICPI 120

Query: 121 CRTSTLESLKGADG 135
           CRT+TLESLKG  G
Sbjct: 121 CRTNTLESLKGCGG 126

[Close]

BLAST of CmoCh15G003390 vs. NCBI nr
Match: RVW46549.1 (putative RING-H2 finger protein ATL49 [Vitis vinifera])

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-32
Identity = 75/124 (60.48%), Postives = 89/124 (71.77%), Query Frame = 0


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M +++SLIL+ LGI +LV+I+V IVGRA RGGF N     GR        +  M  DDL+
Sbjct: 15  MAIVISLILLFLGIGVLVIIHVCIVGRAFRGGFGN-----GRMVERGNPRSTSMSLDDLD 74

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLPCF + A E+   SPVDCAVCL  F+MG+KCRLLP+C HSFHAQCVD WLL TP CPI
Sbjct: 75  KLPCFHFQAKEKGSSSPVDCAVCLDNFKMGDKCRLLPLCNHSFHAQCVDSWLLKTPICPI 133

Query: 121 CRTS 125
           CRTS
Sbjct: 135 CRTS 133

[Close]

BLAST of CmoCh15G003390 vs. NCBI nr
Match: ONI19519.1 (hypothetical protein PRUPE_3G282900 [Prunus persica])

HSP 1 Score: 150.2 bits (378), Expect = 1.7e-32
Identity = 77/131 (58.78%), Postives = 92/131 (70.23%), Query Frame = 0


Query: 1   MELIVSLILILLGIAILVLINVWIVGRAL-RGGFENETTTVGRSNNNNGEATGCMRRDDL 60
           M +  S+IL+ +GI  L+L++VWIVGRA  RGGF N +     S+      T  M +DDL
Sbjct: 1   MAIFFSVILLFVGIGFLILVHVWIVGRAFRRGGFGNGSMVAMASSTG---GTASMSKDDL 60

Query: 61  EKLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACP 120
           EKLP F Y+A  +  GSPVDCAVCL  F+MGEKCRLLP+CKHSFHAQCVD WLL TP CP
Sbjct: 61  EKLPSFDYVANWDKPGSPVDCAVCLDSFKMGEKCRLLPLCKHSFHAQCVDAWLLRTPICP 120

Query: 121 ICRTSTLESLK 131
           ICR+ T E  K
Sbjct: 121 ICRSRTAEPQK 128

[Close]

BLAST of CmoCh15G003390 vs. TAIR 10
Match: AT3G48030.1 (hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 78.6 bits (192), Expect = 5.9e-15
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 0


Query: 59  LEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPAC 118
           ++ LP F Y  +   +  P DCAVCL +F   +K RLLP+C H+FH  C+D WLL    C
Sbjct: 186 IDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTC 245

Query: 119 PICRTS 125
           P+CR S
Sbjct: 246 PLCRRS 251

[Close]

BLAST of CmoCh15G003390 vs. TAIR 10
Match: AT5G05810.1 (RING/U-box superfamily protein )

HSP 1 Score: 73.6 bits (179), Expect = 1.9e-13
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 0


Query: 31  GGFENETTTVGRSNNNNGEATGCMRRDDLEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMG 90
           GG+ N    VG   N+       + R  +E LP F++ A+       ++CAVCL +F+  
Sbjct: 50  GGYYNGGGVVGGRKNSG------IDRSVIESLPVFRFGALSGHKDG-LECAVCLARFEPT 109

Query: 91  EKCRLLPICKHSFHAQCVDEWLLLTPACPICR 123
           E  RLLP CKH+FH +CVD WL     CP+CR
Sbjct: 110 EVLRLLPKCKHAFHVECVDTWLDAHSTCPLCR 134

[Close]

BLAST of CmoCh15G003390 vs. TAIR 10
Match: AT3G10910.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-13
Identity = 36/96 (37.50%), Postives = 55/96 (57.29%), Query Frame = 0


Query: 34  ENETTTVGRSNNNNGE---ATGCMRRDDLEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMG 93
           +++ +    +N N G    ATG +++  L+++P   Y +    M    +C +CLG F+ G
Sbjct: 67  DDQVSNASNANANLGRLAAATG-LKKQALKQIPVGLYGSGIIDM-KATECLICLGDFEDG 126

Query: 94  EKCRLLPICKHSFHAQCVDEWLLLTPACPICRTSTL 127
           EK R+LP C H FH +C+D WLL   +CP CR S L
Sbjct: 127 EKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLL 160

[Close]

BLAST of CmoCh15G003390 vs. TAIR 10
Match: AT4G30400.1 (RING/U-box superfamily protein )

HSP 1 Score: 72.4 bits (176), Expect = 4.2e-13
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = 0


Query: 3   LIVSLILILLGIA-ILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLEK 62
           +I+S+I  + G+  +LV   +    R     F+N T   G+           + +  ++ 
Sbjct: 56  IILSIIFFISGLLHLLVRFLLTPSSRDREDYFDNVTALQGQLQQLFHLHDSGVDQSFIDT 115

Query: 63  LPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPIC 122
           LP F Y ++      P DCAVCL +F+  +K RLLP C H+FH  C+D WLL    CP+C
Sbjct: 116 LPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLC 175

Query: 123 RTSTLESL 130
           R+S L  L
Sbjct: 176 RSSLLSDL 183

[Close]

BLAST of CmoCh15G003390 vs. TAIR 10
Match: AT2G18650.1 (RING/U-box superfamily protein )

HSP 1 Score: 69.7 bits (169), Expect = 2.7e-12
Identity = 41/125 (32.80%), Postives = 67/125 (53.60%), Query Frame = 0


Query: 3   LIVSLILILLGIAILVLINVWIVGRALRGG-FENETTTVGRSNNNNGEATGCMRRDDLEK 62
           +I+S+I  + G+  +++  +    R  R   F+N T   G+           + +  ++ 
Sbjct: 48  IILSIIFFISGLLHILVKFLLTPSRESREDYFDNVTALQGQLQQLFNLHDSGVDQSLIDT 107

Query: 63  LPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPIC 122
           LP F Y ++     SP DC VCL +F+  +K RLLP C H+FH +C+D WLL    CP+C
Sbjct: 108 LPVFHYKSIVGLKISPFDCPVCLCEFETEDKLRLLPKCSHAFHVECIDTWLLSHSTCPLC 167

Query: 123 RTSTL 127
           R++ L
Sbjct: 168 RSNLL 172

The following BLAST results are available for this feature:

BLAST of CmoCh15G003390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q7X843	8.3e-14	46.97	RING-H2 finger protein ATL48 OS=Arabidopsis thaliana OX=3702 GN=ATL48 PE=1 SV=2	[more]
Q5EAE9	2.7e-12	40.22	RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2	[more]
Q940Q4	5.9e-12	34.38	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana OX=3702 GN=ATL13 PE=2 SV=2	[more]
Q9SG96	5.9e-12	37.50	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana OX=3702 GN=ATL72 PE=2 SV=1	[more]
Q9M0R4	3.9e-11	32.28	Putative RING-H2 finger protein ATL37 OS=Arabidopsis thaliana OX=3702 GN=ATL37 P...	[more]

BLAST of CmoCh15G003390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1BYM3	1.0e-43	70.90	E3 ubiquitin-protein ligase ATL4-like OS=Momordica charantia OX=3673 GN=LOC11100...	[more]
M5WUQ4	8.3e-33	58.78	RING-type domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_3G282900 ...	[more]
A0A438EFR3	8.3e-33	60.48	Putative RING-H2 finger protein ATL49 OS=Vitis vinifera OX=29760 GN=ATL49_0 PE=4...	[more]
A0A438JIH1	8.3e-33	60.48	Putative RING-H2 finger protein ATL49 OS=Vitis vinifera OX=29760 GN=ATL49_1 PE=4...	[more]
A0A5N6QVF9	8.3e-33	59.54	RING-type domain-containing protein OS=Carpinus fangiana OX=176857 GN=FH972_0074...	[more]

BLAST of CmoCh15G003390 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578641.1	1.1e-68	100.00	putative RING-H2 finger protein ATL50, partial [Cucurbita argyrosperma subsp. so...	[more]
XP_023551528.1	3.6e-67	97.01	RING-H2 finger protein ATL74-like [Cucurbita pepo subsp. pepo]	[more]
XP_022134384.1	2.2e-43	70.90	E3 ubiquitin-protein ligase ATL4-like [Momordica charantia]	[more]
RVW46549.1	1.7e-32	60.48	putative RING-H2 finger protein ATL49 [Vitis vinifera]	[more]
ONI19519.1	1.7e-32	58.78	hypothetical protein PRUPE_3G282900 [Prunus persica]	[more]

BLAST of CmoCh15G003390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48030.1	5.9e-15	46.97	hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family ...	[more]
AT5G05810.1	1.9e-13	40.22	RING/U-box superfamily protein	[more]
AT3G10910.1	4.2e-13	37.50	RING/U-box superfamily protein	[more]
AT4G30400.1	4.2e-13	34.38	RING/U-box superfamily protein	[more]
AT2G18650.1	2.7e-12	32.80	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 80..121 e-value: 1.5E-5 score: 34.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 79..122 e-value: 8.1E-11 score: 42.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 80..122 score: 11.397556
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 40..126 e-value: 3.6E-19 score: 70.2
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 162..182
None	No IPR available	PANTHER	PTHR45768	E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE	coord: 1..125
None	No IPR available	PANTHER	PTHR45768:SF13	TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED	coord: 1..125
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 70..128

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G003390.1	CmoCh15G003390.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane