CmoCh15G002170 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh15G002170
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr15: 1054800 .. 1056435 (+)
RNA-Seq ExpressionCmoCh15G002170
SyntenyCmoCh15G002170
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAATAGGAAACTTCCAGAAAAGCTGAAAGTTCAGGCCGTCATCTCCAAGATGTTGCTCTTAAAGCTTCTTGGGGGCCAAGAACATCAGATAAAATTCTGTAGGTGGTGCTGTATAAGAGGCTTATTGTATGGTAAAGCCCTTAACTCTGCTTATCTTGGACTCTAGACTAGGCTGCACATTTCTACCAGCATTCTGCCTTGTTTACTTTATTATAACCATTTTTGTTCATGCAGAAACTTTCTCACTCCTTGTGTTAAAGGTTCTCATTGCTAAACGAGTGGAAAAGGTAGCGTGTGTTCTCACCCATAATGAACTTGGTTTGAGTTGTTCATTCTTAGTGTTTTATGGAAGACAACTGATTTGGTTACATTCAAAACATTTGTTAGCACTACATCTTGTCTTTCTTAATACCCCCACCTCGCCTACCTGACTCATAATGTGCTTAATCGTGTTGAGCTTAACAATTTTTCATAATGATGTTCTTTCCTTCTATTAGTTATGAAAATTTGGTGGATCTGTGTATTAATGTAACCAATGCCAATCATGTTTATGCTGCCTTGAGTTTTCTTTCTTTAATATATTTGAAAAGTGATACAAATGCCTATCTTTGGTCTAAAGCAAAGCAATGGATTCTAGCTTGTCATAGCAGCAAAGGTGGTAAAAGAAGATGTTGATTATACGCATTATAACGCATAGCATGAAACATCAAATGCCCCATCAATCTGTTTAGCTAACATAAAGCTACCTAGTCTTATTAGCAGTCACTTTTGACAAACAATCTAGCTTTCTTAAAAGCCATACATGTTGTTAGTCTCCAGAATGTGTTCGAAGTCTTAAAAGTTCAAAACTCTTGCAAATTTGATAATTGCTCAAATATTTGTCTTAGTTATATACTTTCATGCAGGTTTTCTTGTACCATGGGATTAAATATAAATTGTAAGGGGGAGATTTAGCCATCGATATTTGAAATGGTAATGAGTACCTTATCTATTAAGTTATGTTTGGATTGACTGTAGTAGATATTTTATTTCACTAATGCGGTCATTTCCTACTTATCTATTGATGCGTCATGGGTTCGTTATTGAGTTTTCAAATTAAAAGTAGAACGATAGTGCAAGATTAGTCATGTATCATTCTTTTTGTTTGATATCATAGTTCTGATTGCTGATACTTGGTTTTTTCTCCCCATGTTGAATTGAATAATAATTCTTTTGGCAAGCGAAGACAAACTTTGCCAAACAGGTTGATTAGGACATGTCCATGAGCAAAACGATATGAGTGAGACTAAACGAGCCAAGAGGGTTTGTATCACTTTGCTGTGCGTTCATTACCAGGTTGGAAAATAGAAGAGGAGAAAAAAAGAAAAGAAAAGAAAAGAAGAAAGAAAGTGTCTTCATTTGTGTTGGAGCCTTTGGATTGTCATCTTCAATGGCTGTGATGTTGATCAGAATGTAGGCTGCAAACAAAAGACAACTTAGGTTCTTACAGACAGTGTGACAAACTTGTCATCATTTTTGTATGATTAGTAGCCATTGCTTCCCCCACTTGCTGCTTATCCATTTCTCACTACATTTATTGCAGAGACCAGCAATGGAGGTGGTGGTGCTGTTGGGGGACCAACTTTGCAATATCTT

mRNA sequence

AAAATAGGAAACTTCCAGAAAAGCTGAAAGTTCAGGCCGTCATCTCCAAGATGTTGCTCTTAAAGCTTCTTGGGGGCCAAGAACATCAGATAAAATTCTGTAGGTGGTGCTGTATAAGAGGCTTATTGTATGAAACTTTCTCACTCCTTGTGTTAAAGGTTCTCATTGCTAAACGAGTGGAAAAGCCATTGCTTCCCCCACTTGCTGCTTATCCATTTCTCACTACATTTATTGCAGAGACCAGCAATGGAGGTGGTGGTGCTGTTGGGGGACCAACTTTGCAATATCTT

Coding sequence (CDS)

ATGTTGCTCTTAAAGCTTCTTGGGGGCCAAGAACATCAGATAAAATTCTGTAGGTGGTGCTGTATAAGAGGCTTATTGTATGAAACTTTCTCACTCCTTGTGTTAAAGGTTCTCATTGCTAAACGAGTGGAAAAGCCATTGCTTCCCCCACTTGCTGCTTATCCATTTCTCACTACATTTATTGCAGAGACCAGCAATGGAGGTGGTGGTGCTGTTGGGGGACCAACTTTGCAATATCTT

Protein sequence

MLLLKLLGGQEHQIKFCRWCCIRGLLYETFSLLVLKVLIAKRVEKPLLPPLAAYPFLTTFIAETSNGGGGAVGGPTLQYL
Homology
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BLAST of CmoCh15G002170 vs. NCBI nr
Match: KAG7016082.1 (hypothetical protein SDJN02_21186 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 115.5 bits (288), Expect = 2.1e-22
Identity = 64/81 (79.01%), Postives = 65/81 (80.25%), Query Frame = 0 

Query: 1  MLLLKLLGGQEHQIKFCRWCCIRGLLYETFSLLVLKVLIAKRVEKPLLPPLAAYPFLTTF 60
          MLLLKLLGGQEHQIKFCRWCCIRGLLYETFSLLVLKVLIAK+VEK           LT  
Sbjct: 1  MLLLKLLGGQEHQIKFCRWCCIRGLLYETFSLLVLKVLIAKQVEKVAC-------VLTHN 60

Query: 61 IAETSN-GGGGAVGGPTLQYL 81
            ETSN GGGGAVGGPTLQYL
Sbjct: 61 ELETSNGGGGGAVGGPTLQYL 74

The following BLAST results are available for this feature:
BLAST of CmoCh15G002170 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh15G002170 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh15G002170 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7016082.12.1e-2279.01hypothetical protein SDJN02_21186 [Cucurbita argyrosperma subsp. argyrosperma][more]
BLAST of CmoCh15G002170 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G002170.1CmoCh15G002170.1mRNA