CmoCh15G001670 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G001670
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	HIG1 domain-containing protein
Location	Cmo_Chr15: 776804 .. 777506 (-)
RNA-Seq Expression	CmoCh15G001670
Synteny	CmoCh15G001670

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCCCTCAATCTCTCTCTCTCTCTTCATATATATATATAATATAATCTTCTTCTCTTCCTGCTTCAGTGCTGCTCACTGCAACCTGCACACACAACTGACAACAAAAACAACAACAATGGAAGCTATTCAAGCCTGGGTTTCCCAACACAAACTCACCAGCATTGGTAACTCTTCAATACCATCTTTAGCCTTATTCTGGATGCCAAAATACTCCTTTTCATTCAATCCCTCTCTGTTTTTTTCTTACAGGAGCACTGTGGGCATCTGGGATCGGAGCATCCCTCGCCTGTACCCGATCAACAACTCCCCTCAAGCCAAGCCTCCGACTAATCCACGCTAGGTAACATCCCCCCCAAATCTCTCATTTCTTTTCATAAATTAAAATAAAAAAGTTAATCCGAGTGTTTGTTTTATAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTATCCGGCGCCGCCGTCTACCACTACTACGAGAACAAATCCGCCGTCGTACCGGGAGGACAATGAAGTGGATAAGCCGAGACTGGATTTCCAAGGGATGAATCATTTATTGTCAATTAAATGAAGAATATTAGATTCCATCCTTTTAATTAACGTGGATTACAGAGTATGAATTAAAATCTGAAAGGCTTTATAATTTATTGTTATATATTATAATAATAATAATAAGAATCATATCCAAAAATTAAAATCAC

mRNA sequence

CACCCCTCAATCTCTCTCTCTCTCTTCATATATATATATAATATAATCTTCTTCTCTTCCTGCTTCAGTGCTGCTCACTGCAACCTGCACACACAACTGACAACAAAAACAACAACAATGGAAGCTATTCAAGCCTGGGTTTCCCAACACAAACTCACCAGCATTGGAGCACTGTGGGCATCTGGGATCGGAGCATCCCTCGCCTGTACCCGATCAACAACTCCCCTCAAGCCAAGCCTCCGACTAATCCACGCTAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTATCCGGCGCCGCCGTCTACCACTACTACGAGAACAAATCCGCCGTCGTACCGGGAGGACAATGAAGTGGATAAGCCGAGACTGGATTTCCAAGGGATGAATCATTTATTGTCAATTAAATGAAGAATATTAGATTCCATCCTTTTAATTAACGTGGATTACAGAGTATGAATTAAAATCTGAAAGGCTTTATAATTTATTGTTATATATTATAATAATAATAATAAGAATCATATCCAAAAATTAAAATCAC

Coding sequence (CDS)

ATGGAAGCTATTCAAGCCTGGGTTTCCCAACACAAACTCACCAGCATTGGAGCACTGTGGGCATCTGGGATCGGAGCATCCCTCGCCTGTACCCGATCAACAACTCCCCTCAAGCCAAGCCTCCGACTAATCCACGCTAGGATGCATGCTCAGGCATTGACGTTGGCGGTTCTATCCGGCGCCGCCGTCTACCACTACTACGAGAACAAATCCGCCGTCGTACCGGGAGGACAATGA

Protein sequence

MEAIQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSGAAVYHYYENKSAVVPGGQ

Homology

[Close]

BLAST of CmoCh15G001670 vs. ExPASy TrEMBL
Match: A0A0A0K7T4 (HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 6.5e-27
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MEAIQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASGIGASLA TRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENK 71
          AAVYHYY+NK
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of CmoCh15G001670 vs. ExPASy TrEMBL
Match: A0A5A7UEZ1 (Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G001530 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MEAIQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASG+GASLA TRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENK 71
          AAVYHYY+NK
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of CmoCh15G001670 vs. ExPASy TrEMBL
Match: A0A7J7I509 (HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 60/70 (85.71%), Postives = 66/70 (94.29%), Query Frame = 0


Query: 1   MEAIQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEA+Q+WVS+HKLTSIG LWASGIGASLA +R+ TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 38  MEALQSWVSEHKLTSIGTLWASGIGASLAYSRAKTPLKPSLRLIHARMHAQALTLAVLSG 97

Query: 61  AAVYHYYENK 71
           AAVYHYYE +
Sbjct: 98  AAVYHYYEKR 107

[Close]

BLAST of CmoCh15G001670 vs. ExPASy TrEMBL
Match: A0A218WAJ2 (HIG1 domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr025743 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.1e-24
Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1  MEAIQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLTS+GALWAS +GASLA +R+ +PLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQSWVSEHKLTSVGALWASAVGASLAYSRAKSPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKS 72
          AA YHYYE +S
Sbjct: 61 AAAYHYYEQRS 71

[Close]

BLAST of CmoCh15G001670 vs. ExPASy TrEMBL
Match: A0A6P8CN79 (uncharacterized protein LOC116196967 OS=Punica granatum OX=22663 GN=LOC116196967 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 5.1e-24
Identity = 58/71 (81.69%), Postives = 66/71 (92.96%), Query Frame = 0


Query: 1   MEAIQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60
           MEAIQ+WVS+HKLTS+GALWAS +GASLA +R+ +PLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 54  MEAIQSWVSEHKLTSVGALWASAVGASLAYSRAKSPLKPSLRLIHARMHAQALTLAVLSG 113

Query: 61  AAVYHYYENKS 72
           AA YHYYE +S
Sbjct: 114 AAAYHYYEQRS 124

[Close]

BLAST of CmoCh15G001670 vs. NCBI nr
Match: KAG6578469.1 (hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 77/88 (87.50%), Postives = 77/88 (87.50%), Query Frame = 0


Query: 1  MEAIQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSQHKLTSIGALWASGIGASLA TRSTTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENK----------SAVVPGGQ 79
          AAVYHYYENK          SAVVPGGQ
Sbjct: 61 AAVYHYYENKSAGVRSEAPTSAVVPGGQ 88

[Close]

BLAST of CmoCh15G001670 vs. NCBI nr
Match: KAG7016034.1 (BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 138.3 bits (347), Expect = 2.9e-29
Identity = 72/74 (97.30%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MEAIQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVSQHKLTSIGALWASGIGASLA TRSTTPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSQHKLTSIGALWASGIGASLAYTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKSAVV 75
          AAVYHYYENKSA V
Sbjct: 61 AAVYHYYENKSAGV 74

[Close]

BLAST of CmoCh15G001670 vs. NCBI nr
Match: XP_004138401.1 (uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical protein Csa_005574 [Cucumis sativus])

HSP 1 Score: 129.4 bits (324), Expect = 1.3e-26
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MEAIQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASGIGASLA TRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGIGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENK 71
          AAVYHYY+NK
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of CmoCh15G001670 vs. NCBI nr
Match: KAA0052029.1 (respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04531.1 respiratory supercomplex factor 2-like protein-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-26
Identity = 64/70 (91.43%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MEAIQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQAWVS+HKLT+IGALWASG+GASLA TRS TPLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQAWVSEHKLTTIGALWASGMGASLAYTRSRTPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENK 71
          AAVYHYY+NK
Sbjct: 61 AAVYHYYDNK 70

[Close]

BLAST of CmoCh15G001670 vs. NCBI nr
Match: KAG2730587.1 (hypothetical protein I3760_01G301400 [Carya illinoinensis] >KAG7999183.1 hypothetical protein I3843_01G295300 [Carya illinoinensis])

HSP 1 Score: 127.1 bits (318), Expect = 6.6e-26
Identity = 63/71 (88.73%), Postives = 69/71 (97.18%), Query Frame = 0


Query: 1  MEAIQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSG 60
          MEAIQ+WVS+HKLTSIGALWASGIGASLA TR+T+PLKPSLRLIHARMHAQALTLAVLSG
Sbjct: 1  MEAIQSWVSEHKLTSIGALWASGIGASLAYTRTTSPLKPSLRLIHARMHAQALTLAVLSG 60

Query: 61 AAVYHYYENKS 72
          AAVYHYYE ++
Sbjct: 61 AAVYHYYEKRT 71

[Close]

BLAST of CmoCh15G001670 vs. TAIR 10
Match: AT3G05550.1 (Hypoxia-responsive family protein )

HSP 1 Score: 81.3 bits (199), Expect = 3.9e-16
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 0


Query: 2  EAIQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSGA 61
          E I+ WVS HKL ++G LW SGI  S+A   S   +K S+++IHAR+HAQALTLA L+GA
Sbjct: 9  EEIRKWVSDHKLRTVGCLWLSGITGSIAYNWSQPAMKTSVKIIHARLHAQALTLAALAGA 68

Query: 62 AVYHYYENKS 72
          AV  YY++K+
Sbjct: 69 AVVEYYDHKT 78

[Close]

BLAST of CmoCh15G001670 vs. TAIR 10
Match: AT5G27760.1 (Hypoxia-responsive family protein )

HSP 1 Score: 79.0 bits (193), Expect = 1.9e-15
Identity = 37/68 (54.41%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 4  IQAWVSQHKLTSIGALWASGIGASLACTRSTTPLKPSLRLIHARMHAQALTLAVLSGAAV 63
          I+ W+ +HKL ++G LW SGI  S+A   S   +K S+R+IHAR+HAQALTLA L+GAA 
Sbjct: 11 IREWIIEHKLRTVGCLWLSGISGSIAYNWSKPAMKTSVRIIHARLHAQALTLAALAGAAA 70

Query: 64 YHYYENKS 72
            YY++KS
Sbjct: 71 VEYYDHKS 78

The following BLAST results are available for this feature:

BLAST of CmoCh15G001670 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh15G001670 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K7T4	6.5e-27	92.86	HIG1 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G013920 PE=4 S...	[more]
A0A5A7UEZ1	1.4e-26	91.43	Respiratory supercomplex factor 2-like protein OS=Cucumis melo var. makuwa OX=11...	[more]
A0A7J7I509	1.0e-24	85.71	HIG1 domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_000926 PE=4...	[more]
A0A218WAJ2	5.1e-24	81.69	HIG1 domain-containing protein OS=Punica granatum OX=22663 GN=CDL15_Pgr025743 PE...	[more]
A0A6P8CN79	5.1e-24	81.69	uncharacterized protein LOC116196967 OS=Punica granatum OX=22663 GN=LOC116196967...	[more]

BLAST of CmoCh15G001670 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6578469.1	2.0e-30	87.50	hypothetical protein SDJN03_22917, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG7016034.1	2.9e-29	97.30	BTB/POZ domain-containing protein, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_004138401.1	1.3e-26	92.86	uncharacterized protein LOC101218681 [Cucumis sativus] >KGN45820.1 hypothetical ...	[more]
KAA0052029.1	3.0e-26	91.43	respiratory supercomplex factor 2-like protein [Cucumis melo var. makuwa] >TYK04...	[more]
KAG2730587.1	6.6e-26	88.73	hypothetical protein I3760_01G301400 [Carya illinoinensis] >KAG7999183.1 hypothe...	[more]

BLAST of CmoCh15G001670 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G05550.1	3.9e-16	55.71	Hypoxia-responsive family protein	[more]
AT5G27760.1	1.9e-15	54.41	Hypoxia-responsive family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	6.10.140.1320		coord: 13..72 e-value: 3.4E-6 score: 28.7
None	No IPR available	PANTHER	PTHR28018:SF3	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..70
IPR007667	Hypoxia induced protein, domain	PFAM	PF04588	HIG_1_N	coord: 11..59 e-value: 9.5E-8 score: 32.1
IPR007667	Hypoxia induced protein, domain	PROSITE	PS51503	HIG1	coord: 1..76 score: 16.679811
IPR040153	Respiratory supercomplex factor 2, mitochondrial	PANTHER	PTHR28018	RESPIRATORY SUPERCOMPLEX FACTOR 2, MITOCHONDRIAL	coord: 4..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G001670.1	CmoCh15G001670.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0033617	mitochondrial cytochrome c oxidase assembly
cellular_component	GO:0031305	integral component of mitochondrial inner membrane
cellular_component	GO:0005746	mitochondrial respirasome