CmoCh15G000740 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh15G000740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein of unknown function (DUF 3339)
Location	Cmo_Chr15: 393930 .. 394142 (-)
RNA-Seq Expression	CmoCh15G000740
Synteny	CmoCh15G000740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGATTGGGGTCCGGTCTTTGTGGCGGTGGTGCTCTTCGTTCTCCTAACCCCCGGATTGCTCGTTCAGATGCCTGGGAAGAATCGCTTCATCGAGTTTGGGAACTTCCAGACCAGCGGAGTCTCCATTCTGGTTCATTCCGCTCTCTATTTTGCCTTGATCTGCATCTTCTTGCTGGCTGTTGGTGTTCATGTTTATATGGGCTCCTAA

mRNA sequence

ATGGCGGATTGGGGTCCGGTCTTTGTGGCGGTGGTGCTCTTCGTTCTCCTAACCCCCGGATTGCTCGTTCAGATGCCTGGGAAGAATCGCTTCATCGAGTTTGGGAACTTCCAGACCAGCGGAGTCTCCATTCTGGTTCATTCCGCTCTCTATTTTGCCTTGATCTGCATCTTCTTGCTGGCTGTTGGTGTTCATGTTTATATGGGCTCCTAA

Coding sequence (CDS)

ATGGCGGATTGGGGTCCGGTCTTTGTGGCGGTGGTGCTCTTCGTTCTCCTAACCCCCGGATTGCTCGTTCAGATGCCTGGGAAGAATCGCTTCATCGAGTTTGGGAACTTCCAGACCAGCGGAGTCTCCATTCTGGTTCATTCCGCTCTCTATTTTGCCTTGATCTGCATCTTCTTGCTGGCTGTTGGTGTTCATGTTTATATGGGCTCCTAA

Protein sequence

MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLLAVGVHVYMGS

Homology

[Close]

BLAST of CmoCh15G000740 vs. ExPASy TrEMBL
Match: A0A6J1K207 (uncharacterized protein LOC111489412 OS=Cucurbita maxima OX=3661 GN=LOC111489412 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.6e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61 AVGVHVYMGS 71
          AVGVHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CmoCh15G000740 vs. ExPASy TrEMBL
Match: A0A6J1FLS0 (uncharacterized protein LOC111445120 OS=Cucurbita moschata OX=3662 GN=LOC111445120 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.6e-30
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61 AVGVHVYMGS 71
          AVGVHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CmoCh15G000740 vs. ExPASy TrEMBL
Match: A0A6J1BYE9 (uncharacterized protein LOC111006599 OS=Momordica charantia OX=3673 GN=LOC111006599 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.1e-28
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPVFVAVVLFVLLTPGLLVQMPGK+RF+EFGNFQTSGVSILVHS LYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVGVHVYMGS 71
          AVGVHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CmoCh15G000740 vs. ExPASy TrEMBL
Match: A0A5D3BUE1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1154G00130 PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 65/70 (92.86%), Postives = 68/70 (97.14%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPVFVAV+LFVLLTPGLLVQMPGK+RF+EFGNFQTSGVSILVHS LYFALICIFLL
Sbjct: 1  MADWGPVFVAVMLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVGVHVYMGS 71
          AV VHVYMGS
Sbjct: 61 AVRVHVYMGS 70

[Close]

BLAST of CmoCh15G000740 vs. ExPASy TrEMBL
Match: A0A540LU73 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_024378 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.6e-27
Identity = 59/70 (84.29%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          M+DWGPVF+AVVLF+LLTPGLL+QMPGK+RF+EFGNFQTSGVSILVHS +YFALICIFLL
Sbjct: 1  MSDWGPVFIAVVLFILLTPGLLIQMPGKSRFVEFGNFQTSGVSILVHSIIYFALICIFLL 60

Query: 61 AVGVHVYMGS 71
          A+GVH+Y+GS
Sbjct: 61 AIGVHMYVGS 70

[Close]

BLAST of CmoCh15G000740 vs. NCBI nr
Match: XP_023551540.1 (uncharacterized protein LOC111809330 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61 AVGVHVYMGS 71
          AVGVHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CmoCh15G000740 vs. NCBI nr
Match: XP_022993368.1 (uncharacterized protein LOC111489412 [Cucurbita maxima])

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61 AVGVHVYMGS 71
          AVGVHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CmoCh15G000740 vs. NCBI nr
Match: XP_022939120.1 (uncharacterized protein LOC111445120 [Cucurbita moschata])

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61 AVGVHVYMGS 71
          AVGVHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CmoCh15G000740 vs. NCBI nr
Match: KAG6578365.1 (hypothetical protein SDJN03_22813, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 70/70 (100.00%), Postives = 70/70 (100.00%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60

Query: 61 AVGVHVYMGS 71
          AVGVHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CmoCh15G000740 vs. NCBI nr
Match: XP_022134304.1 (uncharacterized protein LOC111006599 [Momordica charantia])

HSP 1 Score: 135.2 bits (339), Expect = 2.2e-28
Identity = 67/70 (95.71%), Postives = 69/70 (98.57%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPVFVAVVLFVLLTPGLLVQMPGK+RF+EFGNFQTSGVSILVHS LYFALICIFLL
Sbjct: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKSRFVEFGNFQTSGVSILVHSILYFALICIFLL 60

Query: 61 AVGVHVYMGS 71
          AVGVHVYMGS
Sbjct: 61 AVGVHVYMGS 70

[Close]

BLAST of CmoCh15G000740 vs. TAIR 10
Match: AT5G08391.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 108.2 bits (269), Expect = 2.7e-24
Identity = 45/69 (65.22%), Postives = 62/69 (89.86%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          M+DWGPV V V+LFV+LTPGLL Q+PG+ +++EFGNFQTS VS++VHS LYF+L+C+FLL
Sbjct: 1  MSDWGPVLVTVILFVMLTPGLLFQLPGRQKYVEFGNFQTSAVSVIVHSLLYFSLVCVFLL 60

Query: 61 AVGVHVYMG 70
          A+ +H+Y+G
Sbjct: 61 ALKIHIYIG 69

[Close]

BLAST of CmoCh15G000740 vs. TAIR 10
Match: AT3G27030.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 100.9 bits (250), Expect = 4.3e-22
Identity = 44/66 (66.67%), Postives = 57/66 (86.36%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          M DWGPVFVAV LFVLLTPGLL+Q+PG+ R +EFG FQTSG+S++VH+ +YF L+CI LL
Sbjct: 1  MPDWGPVFVAVTLFVLLTPGLLIQVPGRGRVVEFGTFQTSGLSVIVHTLIYFTLVCILLL 60

Query: 61 AVGVHV 67
          A+ +H+
Sbjct: 61 ALQIHI 66

[Close]

BLAST of CmoCh15G000740 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 98.2 bits (243), Expect = 2.8e-21
Identity = 45/70 (64.29%), Postives = 57/70 (81.43%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPV VAV+LFVLLTPGLL Q+P + R +EFGN QTSG SILVH+ ++F LI IF +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AVGVHVYMGS 71
          A+ +H+Y G+
Sbjct: 61 AIRLHIYTGT 70

[Close]

BLAST of CmoCh15G000740 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-20
Identity = 43/69 (62.32%), Postives = 55/69 (79.71%), Query Frame = 0


Query: 1  MADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLL 60
          MADWGPV +AV+LFV+L+PGLL Q+P   R +EFGN QTSG SILVH+ ++F LI IF +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AVGVHVYMG 70
          A+ VH+Y G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of CmoCh15G000740 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 87.4 bits (215), Expect = 4.9e-18
Identity = 37/66 (56.06%), Postives = 53/66 (80.30%), Query Frame = 0


Query: 2  ADWGPVFVAVVLFVLLTPGLLVQMPGKNRFIEFGNFQTSGVSILVHSALYFALICIFLLA 61
          ADWGPV VAV LF+LL+PGLL Q+P + R +EFGN  TSG+SILVH+ +YF ++ I ++A
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 VGVHVY 68
          + +H++
Sbjct: 63 IQIHIH 68

The following BLAST results are available for this feature:

BLAST of CmoCh15G000740 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh15G000740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1K207	5.6e-30	100.00	uncharacterized protein LOC111489412 OS=Cucurbita maxima OX=3661 GN=LOC111489412...	[more]
A0A6J1FLS0	5.6e-30	100.00	uncharacterized protein LOC111445120 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A6J1BYE9	1.1e-28	95.71	uncharacterized protein LOC111006599 OS=Momordica charantia OX=3673 GN=LOC111006...	[more]
A0A5D3BUE1	2.0e-27	92.86	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A540LU73	7.6e-27	84.29	Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_024378 PE=4 SV=1	[more]

BLAST of CmoCh15G000740 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023551540.1	1.2e-29	100.00	uncharacterized protein LOC111809330 [Cucurbita pepo subsp. pepo]	[more]
XP_022993368.1	1.2e-29	100.00	uncharacterized protein LOC111489412 [Cucurbita maxima]	[more]
XP_022939120.1	1.2e-29	100.00	uncharacterized protein LOC111445120 [Cucurbita moschata]	[more]
KAG6578365.1	1.2e-29	100.00	hypothetical protein SDJN03_22813, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022134304.1	2.2e-28	95.71	uncharacterized protein LOC111006599 [Momordica charantia]	[more]

BLAST of CmoCh15G000740 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G08391.1	2.7e-24	65.22	Protein of unknown function (DUF 3339)	[more]
AT3G27030.1	4.3e-22	66.67	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G48660.1	2.8e-21	64.29	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	2.3e-20	62.32	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	4.9e-18	56.06	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 3.7E-35 score: 119.9
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33128:SF71	BNAC07G48990D PROTEIN	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G000740.1	CmoCh15G000740.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006606	protein import into nucleus
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005635	nuclear envelope