CmoCh14G022000 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G022000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr14: 15685470 .. 15686105 (-)
RNA-Seq Expression	CmoCh14G022000
Synteny	CmoCh14G022000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGAAGAGAAGGGGGAGTAGTCAGGTGGGTATGTCATCAAAGGCTATAAATCAATCAAACTCTACCCCAGATACAAGCTACGCCAAGTACTCATCCCTCCCAACAAGTGCCAATCCTTCTCTTTCATCCATATTTATAATCCTTTAATTGACAAAACCAACTTTGATAAGCTACGCGTGACGTTATACTCAATGCGACTCTCTTATTTTGCTACCAAATGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGATATCTTCAATTACAACACAGGTCTTTCCTATTAAAGCTACCAAATAAGATTGCAGGTGGGAACAGAAACTGAAGGTGTGATGAAGGGGGAGGGAGAGCAGAAGAGGCAGAAGAATAGAGGGCTTAAATCTGTGTGGGCATGTCTGGTTTTAGTTTTGGTGAGTGTGTCGGGGGGGGTTTTGATGGGTTGGTGGGCGGTTCGGTTCCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGCCTTGTTCTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTCCATCTCCAGTTTCTGCACTTCCATGGACACAACTTCTTCTTCTTTAGTTTCATCCTTGGATCACGACGGACCACCTGAAATTAGATGA

mRNA sequence

ATGAAGAAGAGAAGGGGGAGTAGTCAGGTGGGCTATAAATCAATCAAACTCTACCCCAGATACAAGCTACGCCAAGTACTCATCCCTCCCAACAAGTGCCAATCCTTCTCTTTCATCCATATTTATAATCCTTTAATTGACAAAACCAACTTTGATAAGCTACGCGTGGGAACAGAAACTGAAGGTGTGATGAAGGGGGAGGGAGAGCAGAAGAGGCAGAAGAATAGAGGGCTTAAATCTGTGTGGGCATGTCTGGTTTTAGTTTTGGTGAGTGTGTCGGGGGGGGTTTTGATGGGTTGGTGGGCGGTTCGGTTCCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGCCTTGTTCTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTCCATCTCCAGTTTCTGCACTTCCATGGACACAACTTCTTCTTCTTTAGTTTCATCCTTGGATCACGACGGACCACCTGAAATTAGATGA

Coding sequence (CDS)

ATGAAGAAGAGAAGGGGGAGTAGTCAGGTGGGCTATAAATCAATCAAACTCTACCCCAGATACAAGCTACGCCAAGTACTCATCCCTCCCAACAAGTGCCAATCCTTCTCTTTCATCCATATTTATAATCCTTTAATTGACAAAACCAACTTTGATAAGCTACGCGTGGGAACAGAAACTGAAGGTGTGATGAAGGGGGAGGGAGAGCAGAAGAGGCAGAAGAATAGAGGGCTTAAATCTGTGTGGGCATGTCTGGTTTTAGTTTTGGTGAGTGTGTCGGGGGGGGTTTTGATGGGTTGGTGGGCGGTTCGGTTCCATAGATCACAGAAGCAACAGTGGATGGTACCTTTTAGCCTTGTTCTGATGATTGCTCCCATCTTCGTTTTGATCTCTGTTTCCATCTCCAGTTTCTGCACTTCCATGGACACAACTTCTTCTTCTTTAGTTTCATCCTTGGATCACGACGGACCACCTGAAATTAGATGA

Protein sequence

MKKRRGSSQVGYKSIKLYPRYKLRQVLIPPNKCQSFSFIHIYNPLIDKTNFDKLRVGTETEGVMKGEGEQKRQKNRGLKSVWACLVLVLVSVSGGVLMGWWAVRFHRSQKQQWMVPFSLVLMIAPIFVLISVSISSFCTSMDTTSSSLVSSLDHDGPPEIR

Homology

[Close]

BLAST of CmoCh14G022000 vs. ExPASy TrEMBL
Match: A0A5D3DB24 (Putative permease/transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00680 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 4.3e-41
Identity = 92/108 (85.19%), Postives = 97/108 (89.81%), Query Frame = 0


Query: 54  LRVGTETEGVMKGEGEQKRQKNRGLKSVWACLVLVLVSVSGGVLMGWWAVRFHRSQKQQW 113
           ++VGTE E VMKGEGEQK+QKNR LK+VW C+VLVLVSVSG  LMGWWAVRFHRSQKQQW
Sbjct: 1   MQVGTEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 114 MVPFSLVLMIAPIFVLISVSISSFCTSMDTTSSSLVSSLDHDGPPEIR 162
           MVPFSLVLMIAPIFVLISVSISSFC SMD   SSLVSSLDHD PPEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRI-SSLVSSLDHDRPPEIR 107

[Close]

BLAST of CmoCh14G022000 vs. ExPASy TrEMBL
Match: A0A0A0L8F5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1)

HSP 1 Score: 175.3 bits (443), Expect = 2.1e-40
Identity = 91/108 (84.26%), Postives = 96/108 (88.89%), Query Frame = 0


Query: 54  LRVGTETEGVMKGEGEQKRQKNRGLKSVWACLVLVLVSVSGGVLMGWWAVRFHRSQKQQW 113
           ++VG E E VMKGEGEQK+QKNR LK+VW C+VLVLVSVSG  LMGWWAVRFHRSQKQQW
Sbjct: 1   MQVGIEIEDVMKGEGEQKKQKNRKLKAVWGCVVLVLVSVSGAFLMGWWAVRFHRSQKQQW 60

Query: 114 MVPFSLVLMIAPIFVLISVSISSFCTSMDTTSSSLVSSLDHDGPPEIR 162
           MVPFSLVLMIAPIFVLISVSISSFC SMD   SSLVSSLDHD PPEIR
Sbjct: 61  MVPFSLVLMIAPIFVLISVSISSFCNSMDRI-SSLVSSLDHDRPPEIR 107

[Close]

BLAST of CmoCh14G022000 vs. ExPASy TrEMBL
Match: A0A0A0L5S1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 2.0e-14
Identity = 48/102 (47.06%), Postives = 67/102 (65.69%), Query Frame = 0


Query: 57  GTETEGVMKGEGEQKRQKNRGLKS----VWACLVLVLVSVSGGVLMGWWAVRFHRSQKQQ 116
           G   E  MK E   K+ +N  +KS     W  + +V+  ++GG++ GWW  +FH + +Q 
Sbjct: 16  GFPMESAMKEEDRDKK-RNGNMKSCKIATWV-ISMVVACLTGGLVFGWWVFQFHPTNRQL 75

Query: 117 WMVPFSLVLMIAPIFVLISVSISSFCTSMDTTSSSLVSSLDH 155
           WMVPFSLVLMIAPIFV++S+ IS+FC SMD T++S   S DH
Sbjct: 76  WMVPFSLVLMIAPIFVMMSLLISAFCNSMDQTTTSAAPSSDH 115

[Close]

BLAST of CmoCh14G022000 vs. ExPASy TrEMBL
Match: A0A0A0L313 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118210 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.3e-10
Identity = 42/65 (64.62%), Postives = 47/65 (72.31%), Query Frame = 0


Query: 3  KRRGSSQV---------GYKSIKLYPRYKLRQVLIPPNKCQS--FSFIHIYNPLIDKTNF 57
          K+ GSSQV         G KSIKLYPRYKLRQ+L+P NKCQS  F F++IY PLIDKTN 
Sbjct: 2  KKGGSSQVGAVAHNVIKGNKSIKLYPRYKLRQLLMPANKCQSFFFFFVYIYIPLIDKTNL 61

[Close]

BLAST of CmoCh14G022000 vs. ExPASy TrEMBL
Match: A0A2P5WVN3 (Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA25535 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 3.7e-08
Identity = 43/134 (32.09%), Postives = 72/134 (53.73%), Query Frame = 0


Query: 35  SFSFIHIYNPLIDKTNFDKLRVGTETEGVMKGEGEQKRQKNRGLKSV----WACLVLVLV 94
           S+S++  ++P  +   + +L       G+   E E+  +K+  LK V     ACL   LV
Sbjct: 39  SWSYLDEHHPNSENLTYLQLLPLPTQVGMGSDEEERLERKSEELKKVVHTCIACLWSFLV 98

Query: 95  SVSGGVLMGWWAVRFHRSQKQQWMVPFSLVLMIAPIFVLISVSISSFCT-SMDTTSSSL- 154
           S+SG +++GWW   +H +  Q W+VPF L+L + P+ +  ++ +S FC  + D +SSSL 
Sbjct: 99  SLSGALMLGWWGYEYHPTNSQLWLVPFGLILFVPPLIIWFAIFVSYFCNFTGDGSSSSLH 158

Query: 155 --VSSLDHDGPPEI 161
                +DH  P  I
Sbjct: 159 DPEKMIDHVIPTPI 172

The following BLAST results are available for this feature:

BLAST of CmoCh14G022000 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G022000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DB24	4.3e-41	85.19	Putative permease/transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0L8F5	2.1e-40	84.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118220 PE=4 SV=1	[more]
A0A0A0L5S1	2.0e-14	47.06	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118200 PE=4 SV=1	[more]
A0A0A0L313	2.3e-10	64.62	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118210 PE=4 SV=1	[more]
A0A2P5WVN3	3.7e-08	32.09	Uncharacterized protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA25535 PE=4 SV...	[more]

BLAST of CmoCh14G022000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR032238	Putative ATP-synthase-associated protein	PFAM	PF16594	ATP-synt_Z	coord: 84..135 e-value: 1.0E-16 score: 60.2
None	No IPR available	PANTHER	PTHR35165	OS08G0113900 PROTEIN	coord: 61..150
None	No IPR available	PANTHER	PTHR35165:SF1	OS08G0113900 PROTEIN	coord: 61..150
IPR000515	ABC transporter type 1, transmembrane domain MetI-like	CDD	cd06261	TM_PBP2	coord: 80..137 e-value: 0.00228278 score: 34.9469

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G022000.1	CmoCh14G022000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane