CmoCh14G021980 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G021980
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionAuxin-responsive family protein
LocationCmo_Chr14: 15675371 .. 15675682 (+)
RNA-Seq ExpressionCmoCh14G021980
SyntenyCmoCh14G021980
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCGGTGGAGAGAGACGACGCCAGCACTCCGGCGCCGGCGTCCCCAAAGGCTGCTTGGCGGTCCGAGTGGGGCAGAAGGAGGAAGAGCAGCAGAGATTTGTGGTGCCGGTTATGTACTTCAATCACCCGCGCTTCATGCAACTTCTCAAGGAGGCGGAGGAGGAGTACGGATTCGATCAGAAAGGGACCATCGCCATTCCTTGCCACGTCGAGGAGTTCCGCCACGTCCAGGGCATGATTGACCGTGAAAATTCATTCCACCGCCGTCACCACCACCACCACGTCGGTTGCTTTCGGGTTTCATTCTGA

mRNA sequence

ATGGGCGGTGGAGAGAGACGACGCCAGCACTCCGGCGCCGGCGTCCCCAAAGGCTGCTTGGCGGTCCGAGTGGGGCAGAAGGAGGAAGAGCAGCAGAGATTTGTGGTGCCGGTTATGTACTTCAATCACCCGCGCTTCATGCAACTTCTCAAGGAGGCGGAGGAGGAGTACGGATTCGATCAGAAAGGGACCATCGCCATTCCTTGCCACGTCGAGGAGTTCCGCCACGTCCAGGGCATGATTGACCGTGAAAATTCATTCCACCGCCGTCACCACCACCACCACGTCGGTTGCTTTCGGGTTTCATTCTGA

Coding sequence (CDS)

ATGGGCGGTGGAGAGAGACGACGCCAGCACTCCGGCGCCGGCGTCCCCAAAGGCTGCTTGGCGGTCCGAGTGGGGCAGAAGGAGGAAGAGCAGCAGAGATTTGTGGTGCCGGTTATGTACTTCAATCACCCGCGCTTCATGCAACTTCTCAAGGAGGCGGAGGAGGAGTACGGATTCGATCAGAAAGGGACCATCGCCATTCCTTGCCACGTCGAGGAGTTCCGCCACGTCCAGGGCATGATTGACCGTGAAAATTCATTCCACCGCCGTCACCACCACCACCACGTCGGTTGCTTTCGGGTTTCATTCTGA

Protein sequence

MGGGERRRQHSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTIAIPCHVEEFRHVQGMIDRENSFHRRHHHHHVGCFRVSF
Homology
BLAST of CmoCh14G021980 vs. ExPASy Swiss-Prot
Match: Q9ZUZ3 (Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 5.0e-32
Identity = 67/97 (69.07%), Postives = 77/97 (79.38%), Query Frame = 0

Query: 15  VPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTIAIPCHVEEF 74
           VPKGCLA++VG + EEQQRF+VPV+YFNHP FMQLLKEAE+EYGFDQKGTI IPCHVEEF
Sbjct: 24  VPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCHVEEF 83

Query: 75  RHVQGMIDRE------NSFHRRH-----HHHHVGCFR 101
           R+VQ +ID E      N+ H RH     +HH VGCFR
Sbjct: 84  RYVQALIDGERSVYNGNNHHHRHGGRDQYHHLVGCFR 120

BLAST of CmoCh14G021980 vs. ExPASy Swiss-Prot
Match: O22150 (Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.0e-13
Identity = 35/67 (52.24%), Postives = 48/67 (71.64%), Query Frame = 0

Query: 15  VPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTIAIPCHVEEF 74
           VP+G LA+ VGQK+ +  R +VP++YFNHP F +LL+EAE+EYGF  +G I IPC   +F
Sbjct: 79  VPRGHLAIYVGQKDGDCHRVLVPIVYFNHPLFGELLREAEKEYGFCHEGGITIPCLYSDF 138

Query: 75  RHVQGMI 82
             V+  I
Sbjct: 139 ERVKTRI 145

BLAST of CmoCh14G021980 vs. ExPASy Swiss-Prot
Match: Q41220 (Auxin-responsive protein SAUR15 OS=Arabidopsis thaliana OX=3702 GN=SAUR15 PE=1 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.3e-11
Identity = 32/80 (40.00%), Postives = 50/80 (62.50%), Query Frame = 0

Query: 3  GGERRRQHSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQ- 62
          G ++  +   +  P+G +AV VG+ +++++R+VVPV Y N P F QLL ++EEE+G+D  
Sbjct: 9  GAKQIIRRESSSTPRGFMAVYVGENDQKKKRYVVPVSYLNQPLFQQLLSKSEEEFGYDHP 68

Query: 63 KGTIAIPCHVEEFRHVQGMI 82
           G + IPCH   F  V   I
Sbjct: 69 MGGLTIPCHESLFFTVTSQI 88

BLAST of CmoCh14G021980 vs. ExPASy Swiss-Prot
Match: P33082 (Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 5.4e-10
Identity = 33/72 (45.83%), Postives = 44/72 (61.11%), Query Frame = 0

Query: 7  RRQHSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQ-KGTI 66
          R+  +    PKG LAV VG+K    +RFV+PV Y N P F  LL +AEEE+G+D   G +
Sbjct: 9  RKASNAVDAPKGYLAVYVGEK---MKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGL 68

Query: 67 AIPCHVEEFRHV 78
           IPC  E F+ +
Sbjct: 69 TIPCSEEVFQRI 77

BLAST of CmoCh14G021980 vs. ExPASy Swiss-Prot
Match: P33079 (Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.2e-10
Identity = 33/64 (51.56%), Postives = 41/64 (64.06%), Query Frame = 0

Query: 15 VPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQ-KGTIAIPCHVEE 74
          VPKG  AV VG K    +RF +PV Y N P F +LL +AEEE+G+D   G + IPC  EE
Sbjct: 26 VPKGYAAVYVGDK---MRRFTIPVSYLNEPSFQELLSQAEEEFGYDHPMGGLTIPCKEEE 85

Query: 75 FRHV 78
          F +V
Sbjct: 86 FLNV 86

BLAST of CmoCh14G021980 vs. ExPASy TrEMBL
Match: A0A6J1EEX5 (auxin-responsive protein SAUR32-like OS=Cucurbita moschata OX=3662 GN=LOC111431915 PE=3 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.3e-54
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 0

Query: 1   MGGGERRRQHSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD 60
           MGGGERRRQHSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD
Sbjct: 1   MGGGERRRQHSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD 60

Query: 61  QKGTIAIPCHVEEFRHVQGMIDRENSFHRRHHHHHVGCFRVSF 104
           QKGTIAIPCHVEEFRHVQGMIDRENSFHRRHHHHHVGCFRVSF
Sbjct: 61  QKGTIAIPCHVEEFRHVQGMIDRENSFHRRHHHHHVGCFRVSF 103

BLAST of CmoCh14G021980 vs. ExPASy TrEMBL
Match: A0A6J1IWQ0 (auxin-responsive protein SAUR32-like OS=Cucurbita maxima OX=3661 GN=LOC111479275 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 9.4e-50
Identity = 99/104 (95.19%), Postives = 100/104 (96.15%), Query Frame = 0

Query: 1   MGGGERRRQHSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD 60
           M GG+RRR HSGA VPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD
Sbjct: 1   MPGGDRRRLHSGAAVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD 60

Query: 61  QKGTIAIPCHVEEFRHVQGMIDRENSFHRR-HHHHHVGCFRVSF 104
           QKGTIAIPCHVEEFRHVQGMIDRENSFHRR HHHHHVGCFRVSF
Sbjct: 61  QKGTIAIPCHVEEFRHVQGMIDRENSFHRRHHHHHHVGCFRVSF 104

BLAST of CmoCh14G021980 vs. ExPASy TrEMBL
Match: A0A5D3DBZ9 (Auxin-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold291G00700 PE=3 SV=1)

HSP 1 Score: 195.3 bits (495), Expect = 1.3e-46
Identity = 97/109 (88.99%), Postives = 100/109 (91.74%), Query Frame = 0

Query: 1   MGGGERRRQHSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD 60
           MGGGERRRQ SGA VPKGCLAV+VGQK EEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD
Sbjct: 1   MGGGERRRQ-SGAAVPKGCLAVKVGQKGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD 60

Query: 61  QKGTIAIPCHVEEFRHVQGMIDRENSFHRRHHH------HHVGCFRVSF 104
           QKGTIAIPCHVEEFRHVQGMIDRENSFHRRH+H      HH+GCFRVSF
Sbjct: 61  QKGTIAIPCHVEEFRHVQGMIDRENSFHRRHNHHHHHHSHHLGCFRVSF 108

BLAST of CmoCh14G021980 vs. ExPASy TrEMBL
Match: A0A0A0L5S7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118740 PE=3 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 3.7e-46
Identity = 97/112 (86.61%), Postives = 99/112 (88.39%), Query Frame = 0

Query: 1   MGGGERRRQHSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD 60
           MGGGERRRQ S A VPKGCLAV+VGQK EEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD
Sbjct: 1   MGGGERRRQ-SSATVPKGCLAVKVGQKGEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFD 60

Query: 61  QKGTIAIPCHVEEFRHVQGMIDRENSFHRR---------HHHHHVGCFRVSF 104
           QKGTIAIPCHVEEFRHVQGMIDRENSFHRR         HHHHH+GCFRVSF
Sbjct: 61  QKGTIAIPCHVEEFRHVQGMIDRENSFHRRHNHHHHQQQHHHHHLGCFRVSF 111

BLAST of CmoCh14G021980 vs. ExPASy TrEMBL
Match: A0A6J1ICI8 (auxin-responsive protein SAUR32-like OS=Cucurbita maxima OX=3661 GN=LOC111473610 PE=3 SV=1)

HSP 1 Score: 182.2 bits (461), Expect = 1.1e-42
Identity = 90/106 (84.91%), Postives = 95/106 (89.62%), Query Frame = 0

Query: 1   MGGGER--RRQHSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYG 60
           MGGGER   RQ S   VP+GCLAV+VGQ+ E+QQRFVVPVMYFNHPRFMQLLKEAEEEYG
Sbjct: 1   MGGGERGGGRQPSPPAVPRGCLAVKVGQRGEKQQRFVVPVMYFNHPRFMQLLKEAEEEYG 60

Query: 61  FDQKGTIAIPCHVEEFRHVQGMIDRENSFHRRHH-HHHVGCFRVSF 104
           FDQKGTI IPCHVEEFRHVQ MIDRENSFHRRHH HHH+GCFRVSF
Sbjct: 61  FDQKGTITIPCHVEEFRHVQCMIDRENSFHRRHHNHHHLGCFRVSF 106

BLAST of CmoCh14G021980 vs. TAIR 10
Match: AT2G46690.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 138.3 bits (347), Expect = 3.5e-33
Identity = 67/97 (69.07%), Postives = 77/97 (79.38%), Query Frame = 0

Query: 15  VPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTIAIPCHVEEF 74
           VPKGCLA++VG + EEQQRF+VPV+YFNHP FMQLLKEAE+EYGFDQKGTI IPCHVEEF
Sbjct: 24  VPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCHVEEF 83

Query: 75  RHVQGMIDRE------NSFHRRH-----HHHHVGCFR 101
           R+VQ +ID E      N+ H RH     +HH VGCFR
Sbjct: 84  RYVQALIDGERSVYNGNNHHHRHGGRDQYHHLVGCFR 120

BLAST of CmoCh14G021980 vs. TAIR 10
Match: AT4G00880.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-32
Identity = 68/102 (66.67%), Postives = 78/102 (76.47%), Query Frame = 0

Query: 9   QHSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTIAIP 68
           +H    VPKGCLAV+VGQ  EEQ+RFV+PVMYFNHP F QLLKEAEEE+GF QKGTI IP
Sbjct: 22  EHDHEKVPKGCLAVKVGQ-GEEQERFVIPVMYFNHPLFGQLLKEAEEEFGFAQKGTITIP 81

Query: 69  CHVEEFRHVQGMIDRENS---------FHRRHHHHHVGCFRV 102
           CHVEEFR+VQG+IDREN+          H  HH+H + CFRV
Sbjct: 82  CHVEEFRYVQGLIDRENTRFLGTNLLDHHHHHHNHLIRCFRV 122

BLAST of CmoCh14G021980 vs. TAIR 10
Match: AT3G61900.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-30
Identity = 59/78 (75.64%), Postives = 67/78 (85.90%), Query Frame = 0

Query: 9   QHSGAGVPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTIAIP 68
           +H    VPKGCLA++VG KEEE+QRFVVPV YFNHP FMQLL+EAEEEYGF+QKGTI IP
Sbjct: 24  KHGIKDVPKGCLAIKVGSKEEEKQRFVVPVFYFNHPLFMQLLREAEEEYGFEQKGTITIP 83

Query: 69  CHVEEFRHVQGMIDRENS 87
           CHVE FR+VQ MI+RE S
Sbjct: 84  CHVEVFRYVQDMINRERS 101

BLAST of CmoCh14G021980 vs. TAIR 10
Match: AT5G53590.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 98.2 bits (243), Expect = 4.1e-21
Identity = 50/104 (48.08%), Postives = 68/104 (65.38%), Query Frame = 0

Query: 10  HSGAGVPKGCLAVRVGQKEEEQ--QRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTIAI 69
           H    VPKGC+A+ VG +++E+   RFVVP+++ +HP F+ LLKEAE+EYGF   G I I
Sbjct: 41  HHHHDVPKGCVAIMVGHEDDEEGLHRFVVPLVFLSHPLFLDLLKEAEKEYGFKHDGPITI 100

Query: 70  PCHVEEFRHVQGMIDRENSFHRR------------HHHHHVGCF 100
           PC V+EF+HVQ +ID E   HRR            HH++H+ CF
Sbjct: 101 PCGVDEFKHVQEVIDEET--HRRHSHGGHGHNNHNHHNNHLRCF 142

BLAST of CmoCh14G021980 vs. TAIR 10
Match: AT3G60690.1 (SAUR-like auxin-responsive protein family )

HSP 1 Score: 84.7 bits (208), Expect = 4.7e-17
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 15  VPKGCLAVRVGQKEEEQQRFVVPVMYFNHPRFMQLLKEAEEEYGFDQKGTIAIPCHVEEF 74
           VPKG  AV +G+K+ + QR +VP++YFNHP F +LL+EAEEE+GF Q+G I IPC   +F
Sbjct: 88  VPKGHSAVYIGKKDGDFQRVLVPIVYFNHPLFGELLREAEEEFGFSQEGGITIPCPYSDF 147

Query: 75  RHVQGMIDRENSF 88
           + VQ  I+  + F
Sbjct: 148 KRVQTRIESGSGF 160

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9ZUZ35.0e-3269.07Auxin-responsive protein SAUR32 OS=Arabidopsis thaliana OX=3702 GN=SAUR32 PE=2 S... [more]
O221501.0e-1352.24Auxin-responsive protein SAUR36 OS=Arabidopsis thaliana OX=3702 GN=SAUR36 PE=2 S... [more]
Q412206.3e-1140.00Auxin-responsive protein SAUR15 OS=Arabidopsis thaliana OX=3702 GN=SAUR15 PE=1 S... [more]
P330825.4e-1045.83Auxin-induced protein X15 OS=Glycine max OX=3847 PE=2 SV=1[more]
P330799.2e-1051.56Auxin-induced protein 10A5 OS=Glycine max OX=3847 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A6J1EEX56.3e-54100.00auxin-responsive protein SAUR32-like OS=Cucurbita moschata OX=3662 GN=LOC1114319... [more]
A0A6J1IWQ09.4e-5095.19auxin-responsive protein SAUR32-like OS=Cucurbita maxima OX=3661 GN=LOC111479275... [more]
A0A5D3DBZ91.3e-4688.99Auxin-responsive family protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A0A0L5S73.7e-4686.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G118740 PE=3 SV=1[more]
A0A6J1ICI81.1e-4284.91auxin-responsive protein SAUR32-like OS=Cucurbita maxima OX=3661 GN=LOC111473610... [more]
Match NameE-valueIdentityDescription
AT2G46690.13.5e-3369.07SAUR-like auxin-responsive protein family [more]
AT4G00880.11.0e-3266.67SAUR-like auxin-responsive protein family [more]
AT3G61900.12.2e-3075.64SAUR-like auxin-responsive protein family [more]
AT5G53590.14.1e-2148.08SAUR-like auxin-responsive protein family [more]
AT3G60690.14.7e-1752.05SAUR-like auxin-responsive protein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003676Small auxin-up RNAPFAMPF02519Auxin_induciblecoord: 9..80
e-value: 3.1E-22
score: 78.5
NoneNo IPR availablePANTHERPTHR31374AUXIN-INDUCED PROTEIN-LIKE-RELATEDcoord: 11..98
NoneNo IPR availablePANTHERPTHR31374:SF276SMALL AUXIN-UP RNA-RELATEDcoord: 11..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G021980.1CmoCh14G021980.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009733 response to auxin