CmoCh14G020250 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G020250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	SWIB domain-containing protein
Location	Cmo_Chr14: 14833166 .. 14836350 (-)
RNA-Seq Expression	CmoCh14G020250
Synteny	CmoCh14G020250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTCTCTCCAAAGGACAAGTGGGCCAAAGGCTGTCCAAATGTTACGTACTTCGGAGCGGATTGTCCCTTCGTTTCCCGCGACTCTCTCTGATTCTTCTCCTCACTGAACCCTCCGCCGCAAACCGACTGCAACATCCGAGCGAGCTACAATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGATGCACATCTCTCTTAGCTCCGTTGAAATCTTCTGCCACCGTCCCCCCCACCGCTGTCAAATCGAAGACGATCTCGAAGTCGAACGCTGAGCCGAAGGAGAAGACTCCTCCGAGGTCCGATGTTGCGGCTGCAGCCGCACCCAAGCCGAAATTTCAAAGGGAGATGACTCGACCGACGGGGTTACTGAAAGTCTTCCAGGTTTCTCCAGCGTTGGGCAATTTCTTGGGTGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTATATCAAGCTCCATAACCTTCAGGTTTCTATCTTATTTCCAGTGCTATCTCTGATTTGATCGCGTAGATTGTTGAGTAGGCGAGAACCGTTGTGGTTTCTAGGGAAATGGTGTTGTCCGCGATATTTGATGAATCCTTTGGTCGATCTATTAATTCTGAAGTCCATAAGAAGAGAAATCTGATTTCAAGTAACGAAACTTGTCTCCGCTGCTTCCTTTTTACTTCTCCCCATGCTGCAAGTAAATTTAGGAACTCGTTTACCTTGATGAAAAATGGGTTTCTGGCTTGTCTCCATTTAAGAGTTTGTAGCAATTTCTTCGAGTTTAGGAAGATTATAACTCACGAACTAGCAATTTTTAGGGGTATTAGAAAAATTGCAACAGCCGAGGCCCTCTTTGGGCTTTCCATCAAGGTTTTAGAATGCTGTAGGTTACGGAGAGGTTCTACACTTTTAAGGAATCAAGGGACGTGAGATCTCATAATCCACCCCCTTGGGGTCCAATGTTTGGTGCTGACACCACACACCCTTAAGAAATCAAGGGATGTGAGATCTCACGATCCACCTTCCTTAGGAGCGAGCGTCCTCGCTGGCACACCGCTCGGTGCTTGGCTCTTATACCACACACCACACACCCTTAAGAAATCAAGGGATGTGAGATCTCACAATCCACCTCCCTTGAGAGCGAGCATCTTCGTTGTCACACTGCCCGATGCTTGGCTTTGATACCACACACTCTTAAGAAATCAAGTGATGTGAGATCTCACAATCCACCTCCTTTGAGAGCGAGCGTCCTCGCTGGCACGCCGCCCGATGCTTGGCTCTAATACCACACACCCTTAAGAAATCAAGGGATGTGAGATCTCACAATCCACCTCTCGGGAGCCGGCGTCCTGACTGGCACATTGCCTAGTGCTTGGTTTTGGTACCACCAGCCCAAGTCCCTCTGTGGGTTTTTACTTATGGGCTTCCGGTTTTAAAACGAGTCAGTTAGCCAGACTTTCTACATGTTATACAGAATGTTTCGTTGCTCTCCATAATCCATGTGTTATCTCACAAAAATAGGCACAGGAATAGGCTAAAATAGACCCTATGAAGCTGTTCTGAATGAAATCTTCTGTTATTCTCTCCTACTCTTTGGGGTTAGATCTCTTGAAGCTTTAGAATTGAGAATATTTTGGTGTTTAGACTTGGAATATCTACATGATAGACTCTTGACAGTATTACATGAAGCCTTTATACGTCTATGTAAATTCTTATGGAGCTATCAACAAATTCCTGAAAAATAGAAGCCCCCCCATGGCCATGGTCATAGATAGCTGATAAATCCAAAGCTTCCAAACCTTGACAATCCCCTCTTTTTCTACGAGAATACTTGGCTCTTAAAAGGTTGAAACACTTGATAAAGGGATTATATAGTATTACTTCATAAATTGTTGAAATTGATATTTACTTTCAGAAATATTCTGGTATTGATCTCTATGATGTGTTCGTGGGCACGAGAGTTAAGCCCGGGTTAACTTAAGCTCGAATATGCTATTCTTTTGGATTGGAGTCCTTTCATGTAGCTAGTTACGAATGCTTTTTCTGTCTTTTTACATTTTGTGAGATCTCACATCAATTGTAGAGGGAATAAAGCATTCCTTATAAGTGTGTAGAAACCTCTCTCTAGTAGACGCATCTTAAAATTGTGAGGCTAACGGTGGGCTTGAGCGGTTACAAATGGTATCAAAGCTAGACACTGGGCGGTGTACCAACGAGCACACTGGCCCCAAGAGAGGTGGATTGTGAGATCCCACACATCGGTTGGAGAGGGGAACAAAGTATTCCTTATAACGGTGTAGACACCTCTTTCTAGTAGACGCATTATAAAAGCATAACCGTGATGATATTATATATCGTACAAGTTTCTTCCATTTGAAATATTGTAGGTTAGGCTTGTCTGTAATGCATTTTTAGTTGATGATTAGTGGGTTTCTATGAGCCAAGCTATATGGCATAATGAGATATTTCACTGTCTTTGCCCGCAGAATCCTTCCAACAAAAGAGAGATTTACTGTGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTTGGTTTCTTGGAGATTGGCAAATTGCTCACTCGCCATTTTGTGAAGAACTGATCGCCAAATTCCCAAGCTTTCTGGTTGTTGGGCTCTTCTTTGGCTCACGTGTTTTTAGGCAAACTTGCTCAACTTCTTGTAGATGGTGCATTTTTAGGCTTACTTCCGTGTGTTGTCTGGTAAGTTTTCTTGTAAAAATGATAGCACCTAAACTAATGGTTTCCATCTTCTTCACCCTCCATGGCCATTGGTTCATAGAAGGCAGGGGTGGTTCCATTTGCTACTAGATTTAGTGATTTCGGTAGTCGTAGTTATCTTATCTAATTGACTCACCTTTTGGAACCCGCTACTAGACCGTTTGATTAATTTTTCACCCCTATATTTAAGTCAGACGAATGATTTGCATGTTCGTATTGCTGCGGCTTCCACCCGAGTTTCCTCTAGCTTTGCTTTGCCCCACCTTTTGGAACCCGCTACTAGACCGTTTGATTAATTTTTCGCCCCTATGTTTAAGTCAGACGAATGATTTACATGTTCGTATTGCTGCGGCTTCCACCAGAGTTTCCTCTAGCTTTGCTTTGCCCCACCTTTTGGAACCCGCTACTAGACCGTTTGATTAATTTTTCAC

mRNA sequence

AATTCTCTCCAAAGGACAAGTGGGCCAAAGGCTGTCCAAATGTTACGTACTTCGGAGCGGATTGTCCCTTCGTTTCCCGCGACTCTCTCTGATTCTTCTCCTCACTGAACCCTCCGCCGCAAACCGACTGCAACATCCGAGCGAGCTACAATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGATGCACATCTCTCTTAGCTCCGTTGAAATCTTCTGCCACCGTCCCCCCCACCGCTGTCAAATCGAAGACGATCTCGAAGTCGAACGCTGAGCCGAAGGAGAAGACTCCTCCGAGGTCCGATGTTGCGGCTGCAGCCGCACCCAAGCCGAAATTTCAAAGGGAGATGACTCGACCGACGGGGTTACTGAAAGTCTTCCAGGTTTCTCCAGCGTTGGGCAATTTCTTGGGTGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTATATCAAGCTCCATAACCTTCAGAATCCTTCCAACAAAAGAGAGATTTACTGTGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTTGGTTTCTTGGAGATTGGCAAATTGCTCACTCGCCATTTTGTGAAGAACTGATCGCCAAATTCCCAAGCTTTCTGGTTGTTGGGCTCTTCTTTGGCTCACGTGTTTTTAGGCAAACTTGCTCAACTTCTTGTAGATGGTGCATTTTTAGGCTTACTTCCGTGTGTTGTCTGGTAAGTTTTCTTGTAAAAATGATAGCACCTAAACTAATGGTTTCCATCTTCTTCACCCTCCATGGCCATTGGTTCATAGAAGGCAGGGGTGGTTCCATTTGCTACTAGATTTAGTGATTTCGGTAGTCGTAGTTATCTTATCTAATTGACTCACCTTTTGGAACCCGCTACTAGACCGTTTGATTAATTTTTCACCCCTATATTTAAGTCAGACGAATGATTTGCATGTTCGTATTGCTGCGGCTTCCACCCGAGTTTCCTCTAGCTTTGCTTTGCCCCACCTTTTGGAACCCGCTACTAGACCGTTTGATTAATTTTTCGCCCCTATGTTTAAGTCAGACGAATGATTTACATGTTCGTATTGCTGCGGCTTCCACCAGAGTTTCCTCTAGCTTTGCTTTGCCCCACCTTTTGGAACCCGCTACTAGACCGTTTGATTAATTTTTCAC

Coding sequence (CDS)

ATGTCGTCTGGATTCAGCAATGGCATTAGGGTTTTCAGAGGATGCACATCTCTCTTAGCTCCGTTGAAATCTTCTGCCACCGTCCCCCCCACCGCTGTCAAATCGAAGACGATCTCGAAGTCGAACGCTGAGCCGAAGGAGAAGACTCCTCCGAGGTCCGATGTTGCGGCTGCAGCCGCACCCAAGCCGAAATTTCAAAGGGAGATGACTCGACCGACGGGGTTACTGAAAGTCTTCCAGGTTTCTCCAGCGTTGGGCAATTTCTTGGGTGTATCGGAGGCTTCTCGCACCGACGCCGTCAAGCAGATCTGGTCCTATATCAAGCTCCATAACCTTCAGAATCCTTCCAACAAAAGAGAGATTTACTGTGACGATAAACTTAAAGCCATATTTGAAGGAAGGGAAAAGGTTGGTTTCTTGGAGATTGGCAAATTGCTCACTCGCCATTTTGTGAAGAACTGA

Protein sequence

MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPPRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN

Homology

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BLAST of CmoCh14G020250 vs. ExPASy Swiss-Prot
Match: O74503 (Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=spp27 PE=1 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 6.5e-12
Identity = 40/108 (37.04%), Postives = 60/108 (55.56%), Query Frame = 0


Query: 29  PPTAVKSKTISKSNAE----PKEKTPPRSDVAAAAAPKPKFQREMTRPTGLLKVFQVSPA 88
           P    K K  +++  E    P ++T  R +       + + Q     P  L K  ++SP 
Sbjct: 69  PARKTKGKRATENGTEEGKKPAKRTRKRKEDGEEGGKRKRNQDPANNP--LNKPMKLSPK 128

Query: 89  LGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFE 133
           L  FLG+ + SR   VK++W YIK H+LQ+P++KR I CDDKLK++FE
Sbjct: 129 LAEFLGLEQLSRPQTVKKLWEYIKAHDLQDPNDKRTILCDDKLKSVFE 174

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BLAST of CmoCh14G020250 vs. ExPASy Swiss-Prot
Match: Q08747 (Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=UAF30 PE=1 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 4.2e-11
Identity = 48/132 (36.36%), Postives = 71/132 (53.79%), Query Frame = 0


Query: 22  LKSSATVPPTAVKSKTISK-SNAEPKEKTPPRSDVAAAAAPKPKFQREMTRPTGLLKVFQ 81
           LK +AT+     K  T+SK S+ E K      S+       K K     + P    KV  
Sbjct: 72  LKENATLAIELTKEITVSKRSSGEEKND----SETKGTHVEKKKGTVSKS-PISTRKV-T 131

Query: 82  VSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFL 141
           +S +L + LG  E +RT+ V+++W+YIK HNLQNP+NK+EI CD+KL+ I    +     
Sbjct: 132 LSKSLASLLGEHELTRTEVVRRLWAYIKAHNLQNPNNKKEILCDEKLELIL--GKSTNMF 191

Query: 142 EIGKLLTRHFVK 153
           E+ K+L  H  +
Sbjct: 192 EMHKILASHMTE 195

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BLAST of CmoCh14G020250 vs. ExPASy Swiss-Prot
Match: Q05024 (Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 GN=TRI1 PE=1 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 7.2e-11
Identity = 40/116 (34.48%), Postives = 61/116 (52.59%), Query Frame = 0


Query: 35  SKTISKSNAEPKEKTPPRSDVAAAAAPKPKFQREMTRPTGL-LKVFQVSPALGNFLGVSE 94
           S  + K    P   T  R   + + + + K + +      + ++   +S  L  FLG  E
Sbjct: 79  SLRLQKEEERPLRSTRKRKGKSESKSKRKKKKNDSPDSNSISVRKVLLSAPLQKFLGSEE 138

Query: 95  ASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVGFLEIGKLLTRH 150
             RT  VK IW YIK H+LQNP ++REI CD+K++ IF   +K+    + KLLT+H
Sbjct: 139 LPRTQVVKMIWQYIKEHDLQNPKDRREILCDEKMEPIF--GKKMTMFSMNKLLTKH 192

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BLAST of CmoCh14G020250 vs. ExPASy Swiss-Prot
Match: Q9P7S3 (SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=ssr3 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.0e-08
Identity = 28/70 (40.00%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 79  FQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVG 138
           +++S A  N LG+ E +R D V  +W YIK H LQ+   KR I CD  L+ +FE  +++ 
Sbjct: 206 YKLSKAFANILGIREGTRPDIVSYLWQYIKFHRLQDMEEKRLINCDKALRDLFEA-DRLY 265

Query: 139 FLEIGKLLTR 149
           F  I +L+ R
Sbjct: 266 FPRIPELMNR 274

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BLAST of CmoCh14G020250 vs. ExPASy Swiss-Prot
Match: Q2TBN1 (SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 1 OS=Bos taurus OX=9913 GN=SMARCD1 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.1e-06
Identity = 24/68 (35.29%), Postives = 39/68 (57.35%), Query Frame = 0


Query: 79  FQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVG 138
           F++ P L   LG+   +R   ++ +W YIK H LQ+P  +  + CD  L+ IFE  +++ 
Sbjct: 295 FKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFES-QRMK 354

Query: 139 FLEIGKLL 147
           F EI + L
Sbjct: 355 FSEIPQRL 361

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BLAST of CmoCh14G020250 vs. ExPASy TrEMBL
Match: A0A6J1EDA2 (upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=LOC111432134 PE=4 SV=1)

HSP 1 Score: 300.8 bits (769), Expect = 3.2e-78
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPPRSDVAAAAA 60
           MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPPRSDVAAAAA
Sbjct: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPPRSDVAAAAA 60

Query: 61  PKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKRE 120
           PKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKRE
Sbjct: 61  PKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKRE 120

Query: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Sbjct: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

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BLAST of CmoCh14G020250 vs. ExPASy TrEMBL
Match: A0A6J1IWB1 (protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 8.4e-71
Identity = 140/153 (91.50%), Postives = 144/153 (94.12%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAEPKEKTPPRSDVAAAAA 60
           MSSGFSNGIRVFRGC +LLAP KSSATVPP AVKS+T SKSN EPKEKTPPRSDVAAAAA
Sbjct: 1   MSSGFSNGIRVFRGCRALLAPSKSSATVPPAAVKSRTTSKSNTEPKEKTPPRSDVAAAAA 60

Query: 61  PKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKRE 120
           PKPK +REMTR TG LKV QVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNP+NKRE
Sbjct: 61  PKPKVKREMTRSTGFLKVLQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPANKRE 120

Query: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN
Sbjct: 121 IYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 153

[Close]

BLAST of CmoCh14G020250 vs. ExPASy TrEMBL
Match: A0A6J1D0R8 (upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=LOC111015988 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 2.7e-61
Identity = 127/154 (82.47%), Postives = 133/154 (86.36%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVP-PTAVKSKTISKSNAEPKEKTPPRSDVAAAA 60
           MSSG SNGIRVFRGC +LLAP KSSA+VP   A KSK   K  +E KEKT P SD AAAA
Sbjct: 1   MSSGLSNGIRVFRGCRALLAPSKSSASVPAAAAAKSKATGKPKSESKEKTAPSSDTAAAA 60

Query: 61  APKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKR 120
           APKPK +REMTRP G+LKV QVSPALGNFLGV EASRTDAVKQIWSYIKLHNLQNP+NKR
Sbjct: 61  APKPKIKREMTRPAGILKVAQVSPALGNFLGVPEASRTDAVKQIWSYIKLHNLQNPANKR 120

Query: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           EIYCDDKLKAIFEGREKVGFLEIGKLL RHFVKN
Sbjct: 121 EIYCDDKLKAIFEGREKVGFLEIGKLLARHFVKN 154

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BLAST of CmoCh14G020250 vs. ExPASy TrEMBL
Match: A0A0A0L3V0 (SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.4e-56
Identity = 121/157 (77.07%), Postives = 131/157 (83.44%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAE---PKEKTPPRSDVA- 60
           MSSGF+NGIRVFR C +LLAP KSSATVP TA KSKT SK   +   PK KTPP S  A 
Sbjct: 1   MSSGFNNGIRVFRACRALLAPSKSSATVPATAPKSKTTSKLEPKPKLPKVKTPPSSVAAG 60

Query: 61  AAAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPS 120
            AA P+PK ++EM+RP+G+LKV QVSPAL NFLGVSEASR+DAV QIWSYIKLHNLQNP 
Sbjct: 61  VAATPEPKIKKEMSRPSGILKVTQVSPALSNFLGVSEASRSDAVTQIWSYIKLHNLQNPD 120

Query: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           NKREIYCDDKLKAIFEGREKVGFLEIGK L RHFVKN
Sbjct: 121 NKREIYCDDKLKAIFEGREKVGFLEIGKSLARHFVKN 157

[Close]

BLAST of CmoCh14G020250 vs. ExPASy TrEMBL
Match: A0A1S3AVG6 (upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC103483375 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 3.8e-55
Identity = 118/156 (75.64%), Postives = 130/156 (83.33%), Query Frame = 0


Query: 1   MSSGFSNGIRVFRGCTSLLAPLKSSATVPPTAVKSKTISKSNAE-PKEKTPPRSDVAA-- 60
           MSSGF+NG+RVFR C +LLAP KSSATVP TA KSKT +K   + PK KTPP S  AA  
Sbjct: 1   MSSGFNNGLRVFRACRTLLAPSKSSATVPATAPKSKTTTKPKTKLPKVKTPPSSVAAAGV 60

Query: 61  AAAPKPKFQREMTRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSN 120
           AA P+PK ++  +RP+G+LKV QVSPAL NFLGVSEASRTDAV QIWSYIKLHNLQNP N
Sbjct: 61  AATPEPKIKKGTSRPSGILKVTQVSPALSNFLGVSEASRTDAVTQIWSYIKLHNLQNPDN 120

Query: 121 KREIYCDDKLKAIFEGREKVGFLEIGKLLTRHFVKN 154
           KREIYCDDKLKAIFEGREKV FLEIGK+L RHFVKN
Sbjct: 121 KREIYCDDKLKAIFEGREKVSFLEIGKMLARHFVKN 156

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BLAST of CmoCh14G020250 vs. TAIR 10
Match: AT3G03590.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 132.5 bits (332), Expect = 2.9e-31
Identity = 73/143 (51.05%), Postives = 93/143 (65.03%), Query Frame = 0


Query: 11  VFRGCTSLLAPL-KSSATVPPTAVKSKTISKSNAEPKEKTPPRSDVAAAAAPKPKFQREM 70
           VFRG  SLLAP  ++++++       K  +K  A+ K K   +SD  A   P        
Sbjct: 8   VFRGARSLLAPASRATSSLVSAGSTKKPAAKPKAKAKPKPKAKSDSPAKKTP-------- 67

Query: 71  TRPTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKA 130
            R TG+ KV  VSP L  FLG  E SRTDA+K IW+YIK H+LQNP++KREI+CD+ LK 
Sbjct: 68  -RSTGIFKVTPVSPVLAQFLGTGETSRTDAIKGIWTYIKSHDLQNPADKREIFCDETLKL 127

Query: 131 IFEGREKVGFLEIGKLLTRHFVK 153
           IFEG++KVGFLEI KLL+ HFVK
Sbjct: 128 IFEGKDKVGFLEISKLLSPHFVK 141

[Close]

BLAST of CmoCh14G020250 vs. TAIR 10
Match: AT2G35605.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 114.4 bits (285), Expect = 8.1e-26
Identity = 53/81 (65.43%), Postives = 65/81 (80.25%), Query Frame = 0


Query: 73  TGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFE 132
           TG+LKV  VS  L NF+G +E SRT AVK+IW YIKL+NLQNP NKREI CD++LK IF 
Sbjct: 28  TGILKVVPVSKPLANFIGENEVSRTTAVKKIWEYIKLNNLQNPVNKREILCDEQLKTIFS 87

Query: 133 GREKVGFLEIGKLLTRHFVKN 154
           G++ VGFLEI KLL++HF K+
Sbjct: 88  GKDTVGFLEISKLLSQHFPKS 108

[Close]

BLAST of CmoCh14G020250 vs. TAIR 10
Match: AT4G34290.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 103.6 bits (257), Expect = 1.4e-22
Identity = 61/133 (45.86%), Postives = 82/133 (61.65%), Query Frame = 0


Query: 20  APLKSSATVPPTAVKSKTISKSNAEPKEKTPPRSDVAAAAAPKPKFQREMTR-PTGLLKV 79
           APL+SS   P       ++  S   P      R+  +AAAA         TR P G++K 
Sbjct: 18  APLRSSMLSP------SSLRLSPNHPTNLRMVRAVTSAAAASSDPTTTTKTREPRGIMKP 77

Query: 80  FQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEGREKVG 139
             VS A+ + +GV E  RT A+K+IW+YIK H+LQ+P NKR+I CD+KLK IFEG+E+VG
Sbjct: 78  RPVSQAMQDVVGVPEIPRTQALKRIWAYIKEHDLQDPQNKRDILCDEKLKKIFEGKERVG 137

Query: 140 FLEIGKLLTRHFV 152
           FLEI KL+  HF+
Sbjct: 138 FLEIAKLIGPHFL 144

[Close]

BLAST of CmoCh14G020250 vs. TAIR 10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 102.4 bits (254), Expect = 3.2e-22
Identity = 45/80 (56.25%), Postives = 60/80 (75.00%), Query Frame = 0


Query: 74  GLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIFEG 133
           G+ K   VS  L +F G  E +R  A+K++W Y+KLHNLQNP+NK+EI+CDDKLK IF+G
Sbjct: 32  GIFKTRPVSQQLASFAGERELTRGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDG 91

Query: 134 REKVGFLEIGKLLTRHFVKN 154
           ++KVG  EI KLL+ HF K+
Sbjct: 92  KDKVGITEIMKLLSPHFPKS 111

[Close]

BLAST of CmoCh14G020250 vs. TAIR 10
Match: AT2G14880.1 (SWIB/MDM2 domain superfamily protein )

HSP 1 Score: 101.3 bits (251), Expect = 7.1e-22
Identity = 45/80 (56.25%), Postives = 62/80 (77.50%), Query Frame = 0


Query: 72  PTGLLKVFQVSPALGNFLGVSEASRTDAVKQIWSYIKLHNLQNPSNKREIYCDDKLKAIF 131
           P G++K   VSP + + + + E +RT A+K+IW+YIK H+LQ+P NKREI CD+KLK IF
Sbjct: 62  PRGIMKPRPVSPEMQDIVELPEIARTQALKRIWAYIKEHDLQDPQNKREILCDEKLKKIF 121

Query: 132 EGREKVGFLEIGKLLTRHFV 152
           EGR++VGFLEI KL+  HF+
Sbjct: 122 EGRDRVGFLEIAKLIGPHFL 141

The following BLAST results are available for this feature:

BLAST of CmoCh14G020250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O74503	6.5e-12	37.04	Upstream activation factor subunit spp27 OS=Schizosaccharomyces pombe (strain 97...	[more]
Q08747	4.2e-11	36.36	Upstream activation factor subunit UAF30 OS=Saccharomyces cerevisiae (strain ATC...	[more]
Q05024	7.2e-11	34.48	Protein TRI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) OX=559292 ...	[more]
Q9P7S3	2.0e-08	40.00	SWI/SNF and RSC complexes subunit ssr3 OS=Schizosaccharomyces pombe (strain 972 ...	[more]
Q2TBN1	3.1e-06	35.29	SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfami...	[more]

BLAST of CmoCh14G020250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDA2	3.2e-78	100.00	upstream activation factor subunit spp27-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1IWB1	8.4e-71	91.50	protein TRI1-like OS=Cucurbita maxima OX=3661 GN=LOC111479808 PE=4 SV=1	[more]
A0A6J1D0R8	2.7e-61	82.47	upstream activation factor subunit spp27-like OS=Momordica charantia OX=3673 GN=...	[more]
A0A0A0L3V0	3.4e-56	77.07	SWIB domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G126840 PE=4 S...	[more]
A0A1S3AVG6	3.8e-55	75.64	upstream activation factor subunit UAF30-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]

BLAST of CmoCh14G020250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G03590.1	2.9e-31	51.05	SWIB/MDM2 domain superfamily protein	[more]
AT2G35605.1	8.1e-26	65.43	SWIB/MDM2 domain superfamily protein	[more]
AT4G34290.1	1.4e-22	45.86	SWIB/MDM2 domain superfamily protein	[more]
AT1G31760.1	3.2e-22	56.25	SWIB/MDM2 domain superfamily protein	[more]
AT2G14880.1	7.1e-22	56.25	SWIB/MDM2 domain superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019835	SWIB domain	SMART	SM00151	swib_2	coord: 75..152 e-value: 7.9E-31 score: 118.4
IPR036885	SWIB/MDM2 domain superfamily	GENE3D	1.10.245.10	SWIB/MDM2 domain	coord: 69..153 e-value: 1.7E-28 score: 100.5
IPR036885	SWIB/MDM2 domain superfamily	SUPERFAMILY	47592	SWIB/MDM2 domain	coord: 71..152
IPR003121	SWIB/MDM2 domain	PFAM	PF02201	SWIB	coord: 78..150 e-value: 7.0E-30 score: 102.7
IPR003121	SWIB/MDM2 domain	PROSITE	PS51925	SWIB_MDM2	coord: 74..152 score: 23.947945
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 30..64
None	No IPR available	PANTHER	PTHR13844	SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D	coord: 1..152
None	No IPR available	PANTHER	PTHR13844:SF67	PROTEIN TRI1	coord: 1..152
None	No IPR available	CDD	cd10567	SWIB-MDM2_like	coord: 79..150 e-value: 2.6499E-35 score: 115.333

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G020250.1	CmoCh14G020250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus