CmoCh14G016080 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G016080
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr14: 12775289 .. 12776170 (+)
RNA-Seq Expression	CmoCh14G016080
Synteny	CmoCh14G016080

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGATCCCAGGCAAGGACTTGACATCAGAACCAGTAGCAATTATAATGTTCTTTCCTTTCACAATCGTGTTTCCCCCATCGATCGTGTCGACAGAAACTTCAGAAGGGGAGATTAGCTTTCCATAACCTTTGACATAGTTCACTTTATTCTTCTTAAACAAGCCTTCAATACCTCGCGTCAGATTAGCAACTGCTGTATCTTTCTGTGCCATCATGGCAGGCAAATCAACCTCAACAGAAGAAAACTTCACGCCATGGTTTGCAAATGCATGTTTAGCTTCATGATACATGTGAGAGGAATGAAGAAGAGCCTGAAATTATTCAAACAAACAGAAATCCATATGTTAGAGGCTTGAACTTGCCTCTAATGATCAAAACATCGAAGCAACAAGAGTTGTTAGTGGTGAGCAATACGAGAAGCCATTAACGGGCAATCAACATTATTTGATTCAAAACTCCATTAATTTCATAGGAAAGTGCAATCAGTCAATACCATAAAACACACGAGAAATTCAATCATTTCTTTGCCCTTGGTTAGGAAAAAAGTTGCATCAGATTTCCTTAAAGACAGACCTGAATAAACAATAAGAGATCACTCCAACACCACATCTAATCGCGAACCGAAAATTTCAACATCACTACAGAGAGAAGACGCAAAGAGAGAGGAAAGAGTTGAGCTACAAAGAAAAAAAAAAATCTCGGAAGCAAGCAAATCACCTTGGACGGTATACAACCGACATTGAGACAAGTACCGCCAAGAGTCCCACGCTTCTCGATGCAGGTGGTCTTGAGGCCAAGCTGAGCAGCCTTGATGGCCGCGACATAGCCTCCAGGGCCGCCGCCGATGATGACTACGTCATTCTCATCAGATCCCGATGA

mRNA sequence

ATGGTGATCCCAGGCAAGGACTTGACATCAGAACCAGTAGCAATTATAATAGAGAAGACGCAAAGAGAGAGGAAAGAGTTGAGCTACAAAGAAAAAAAAAAATCTCGGAAGCAAGCAAATCACCTTGGACGGTATACAACCGACATTGAGACAAGTACCGCCAAGAGTCCCACGCTTCTCGATGCAGGTGGTCTTGAGGCCAAGCTGAGCAGCCTTGATGGCCGCGACATAGCCTCCAGGGCCGCCGCCGATGATGACTACGTCATTCTCATCAGATCCCGATGA

Coding sequence (CDS)

ATGGTGATCCCAGGCAAGGACTTGACATCAGAACCAGTAGCAATTATAATAGAGAAGACGCAAAGAGAGAGGAAAGAGTTGAGCTACAAAGAAAAAAAAAAATCTCGGAAGCAAGCAAATCACCTTGGACGGTATACAACCGACATTGAGACAAGTACCGCCAAGAGTCCCACGCTTCTCGATGCAGGTGGTCTTGAGGCCAAGCTGAGCAGCCTTGATGGCCGCGACATAGCCTCCAGGGCCGCCGCCGATGATGACTACGTCATTCTCATCAGATCCCGATGA

Protein sequence

MVIPGKDLTSEPVAIIIEKTQRERKELSYKEKKKSRKQANHLGRYTTDIETSTAKSPTLLDAGGLEAKLSSLDGRDIASRAAADDDYVILIRSR

Homology

[Close]

BLAST of CmoCh14G016080 vs. ExPASy TrEMBL
Match: A0A7J6HQP0 (Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_008865 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 9.0e-07
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 45 YTTDIETSTAKSPTLLDAGGLEAKLSSLDGRDIASRAAADDDYVILIRSR 95
          Y  DI+ ST++SPTLLDAGG E+KLS LD   IA+RA ADD Y+ LI SR
Sbjct: 15 YAADIKASTSESPTLLDAGGFESKLSGLDCGHIAARATADDHYITLIGSR 64

[Close]

BLAST of CmoCh14G016080 vs. NCBI nr
Match: KAF4397019.1 (hypothetical protein G4B88_008865 [Cannabis sativa])

HSP 1 Score: 62.8 bits (151), Expect = 1.9e-06
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 0


Query: 45 YTTDIETSTAKSPTLLDAGGLEAKLSSLDGRDIASRAAADDDYVILIRSR 95
          Y  DI+ ST++SPTLLDAGG E+KLS LD   IA+RA ADD Y+ LI SR
Sbjct: 15 YAADIKASTSESPTLLDAGGFESKLSGLDCGHIAARATADDHYITLIGSR 64

The following BLAST results are available for this feature:

BLAST of CmoCh14G016080 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G016080 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6HQP0	9.0e-07	64.00	Uncharacterized protein OS=Cannabis sativa OX=3483 GN=G4B88_008865 PE=3 SV=1	[more]

BLAST of CmoCh14G016080 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF4397019.1	1.9e-06	64.00	hypothetical protein G4B88_008865 [Cannabis sativa]	[more]

BLAST of CmoCh14G016080 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 26..50

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G016080.1	CmoCh14G016080.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding
molecular_function	GO:0016491	oxidoreductase activity