CmoCh14G012760 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G012760
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Ankyrin repeat-containing protein
Location	Cmo_Chr14: 10699890 .. 10700215 (-)
RNA-Seq Expression	CmoCh14G012760
Synteny	CmoCh14G012760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATATCAACAACCATCATTTTACTGGAGTTACTCAATGGCAAACACGGTGTCATTTATGGCCTCTGTGGGCATTATTCTGCTAACCATCACTCGAGTTCCACTAAAAAATAAGTTCTCTGGTTGCATGTTGACGCTTGCCATGGTTGTAGCAGTGGTGTTCTTAATGTTTGGGTATCTGCTAGGAGTTGCAATGATTAACATCGACCATTCCTACCGGCCTATTACAAGTTATGCCTATATATTTGGAATTTACTTTTTGCTTGGGTTGGTTGGATTGATTTTTCTATTCCACATAACTCGTTTTTTTAAGTGGGTGATTAA

mRNA sequence

ATGGCATATCAACAACCATCATTTTACTGGAGTTACTCAATGGCAAACACGGTGTCATTTATGGCCTCTGTGGGCATTATTCTGCTAACCATCACTCGAGTTCCACTAAAAAATAAGTTCTCTGGTTGCATGTTGACGCTTGCCATGGTTGTAGCAGTGGTGTTCTTAATGTTTGGGTATCTGCTAGGAGTTGCAATGATTAACATCGACCATTCCTACCGGCCTATTACAATGGGTGATTAA

Coding sequence (CDS)

ATGGCATATCAACAACCATCATTTTACTGGAGTTACTCAATGGCAAACACGGTGTCATTTATGGCCTCTGTGGGCATTATTCTGCTAACCATCACTCGAGTTCCACTAAAAAATAAGTTCTCTGGTTGCATGTTGACGCTTGCCATGGTTGTAGCAGTGGTGTTCTTAATGTTTGGGTATCTGCTAGGAGTTGCAATGATTAACATCGACCATTCCTACCGGCCTATTACAATGGGTGATTAA

Protein sequence

MAYQQPSFYWSYSMANTVSFMASVGIILLTITRVPLKNKFSGCMLTLAMVVAVVFLMFGYLLGVAMINIDHSYRPITMGD

Homology

[Close]

BLAST of CmoCh14G012760 vs. ExPASy TrEMBL
Match: A0A5D3BBL5 (Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold535G00190 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MAYQQPSFYWSYSMANTVSFMASVGIILLTITRVPLKNKFSGCMLTLAMVVAVVFLMFGY 60
           MAYQQP  YW Y   NT+SF+ASV +IL+ + R PLKN+ S  +L LAM +AVV L  GY
Sbjct: 64  MAYQQPQLYWVYLWVNTISFLASVSVILMIVGRFPLKNRISSWILALAMCIAVVSLAIGY 123

Query: 61  LLGVAMINI 70
           L+GV M+N+
Sbjct: 124 LIGVKMVNL 132

[Close]

BLAST of CmoCh14G012760 vs. ExPASy TrEMBL
Match: A0A1S4E4G3 (uncharacterized protein LOC107992042 OS=Cucumis melo OX=3656 GN=LOC107992042 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 2.3e-11
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MAYQQPSFYWSYSMANTVSFMASVGIILLTITRVPLKNKFSGCMLTLAMVVAVVFLMFGY 60
           MAYQQP  YW Y   NT+SF+ASV +IL+ + R PLKN+ S  +L LAM +AVV L  GY
Sbjct: 126 MAYQQPQLYWVYLWVNTISFLASVSVILMIVGRFPLKNRISSWILALAMCIAVVSLAIGY 185

Query: 61  LLGVAMINI 70
           L+GV M+N+
Sbjct: 186 LIGVKMVNL 194

[Close]

BLAST of CmoCh14G012760 vs. ExPASy TrEMBL
Match: A0A6J1GWC0 (ankyrin repeat-containing protein At5g02620-like isoform X4 OS=Cucurbita moschata OX=3662 GN=LOC111457477 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.6e-10
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MAYQQPSFYWSYSMANTVSFMASVGIILLTITRVPLKNKFSGCMLTLAMVVAVVFLMFGY 60
           MAY++P  Y  YSMAN VSFMASVG+ILL I+RVPLKN+    +L LAM  AVVFL   +
Sbjct: 254 MAYRRPVQYLIYSMANVVSFMASVGVILLIISRVPLKNRVCSWVLVLAMCAAVVFLALAF 313

Query: 61  LLGVAMINI 70
           L G  M+N+
Sbjct: 314 LQGFIMVNL 322

[Close]

BLAST of CmoCh14G012760 vs. ExPASy TrEMBL
Match: A0A6J1GTP7 (uncharacterized protein LOC111457477 isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111457477 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.6e-10
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MAYQQPSFYWSYSMANTVSFMASVGIILLTITRVPLKNKFSGCMLTLAMVVAVVFLMFGY 60
           MAY++P  Y  YSMAN VSFMASVG+ILL I+RVPLKN+    +L LAM  AVVFL   +
Sbjct: 283 MAYRRPVQYLIYSMANVVSFMASVGVILLIISRVPLKNRVCSWVLVLAMCAAVVFLALAF 342

Query: 61  LLGVAMINI 70
           L G  M+N+
Sbjct: 343 LQGFIMVNL 351

[Close]

BLAST of CmoCh14G012760 vs. ExPASy TrEMBL
Match: A0A6J1GV64 (uncharacterized protein LOC111457477 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111457477 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 9.6e-10
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MAYQQPSFYWSYSMANTVSFMASVGIILLTITRVPLKNKFSGCMLTLAMVVAVVFLMFGY 60
           MAY++P  Y  YSMAN VSFMASVG+ILL I+RVPLKN+    +L LAM  AVVFL   +
Sbjct: 288 MAYRRPVQYLIYSMANVVSFMASVGVILLIISRVPLKNRVCSWVLVLAMCAAVVFLALAF 347

Query: 61  LLGVAMINI 70
           L G  M+N+
Sbjct: 348 LQGFIMVNL 356

[Close]

BLAST of CmoCh14G012760 vs. NCBI nr
Match: TYJ96703.1 (ankyrin repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 77.8 bits (190), Expect = 4.7e-11
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MAYQQPSFYWSYSMANTVSFMASVGIILLTITRVPLKNKFSGCMLTLAMVVAVVFLMFGY 60
           MAYQQP  YW Y   NT+SF+ASV +IL+ + R PLKN+ S  +L LAM +AVV L  GY
Sbjct: 64  MAYQQPQLYWVYLWVNTISFLASVSVILMIVGRFPLKNRISSWILALAMCIAVVSLAIGY 123

Query: 61  LLGVAMINI 70
           L+GV M+N+
Sbjct: 124 LIGVKMVNL 132

[Close]

BLAST of CmoCh14G012760 vs. NCBI nr
Match: XP_016903123.1 (PREDICTED: uncharacterized protein LOC107992042 [Cucumis melo])

HSP 1 Score: 77.8 bits (190), Expect = 4.7e-11
Identity = 39/69 (56.52%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MAYQQPSFYWSYSMANTVSFMASVGIILLTITRVPLKNKFSGCMLTLAMVVAVVFLMFGY 60
           MAYQQP  YW Y   NT+SF+ASV +IL+ + R PLKN+ S  +L LAM +AVV L  GY
Sbjct: 126 MAYQQPQLYWVYLWVNTISFLASVSVILMIVGRFPLKNRISSWILALAMCIAVVSLAIGY 185

Query: 61  LLGVAMINI 70
           L+GV M+N+
Sbjct: 186 LIGVKMVNL 194

[Close]

BLAST of CmoCh14G012760 vs. NCBI nr
Match: KAG6581828.1 (hypothetical protein SDJN03_21830, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 72.8 bits (177), Expect = 1.5e-09
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MAYQQPSFYWSYSMANTVSFMASVGIILLTITRVPLKNKFSGCMLTLAMVVAVVFLMFGY 60
           MAY++P  Y  YSMAN VSFMASVG+ILL I+RVPLKN+    +L LAM  AVVFL   +
Sbjct: 288 MAYRRPVQYLIYSMANVVSFMASVGVILLIISRVPLKNRVCSWLLVLAMCAAVVFLALAF 347

Query: 61  LLGVAMINI 70
           L G  M+N+
Sbjct: 348 LQGFIMVNL 356

[Close]

BLAST of CmoCh14G012760 vs. NCBI nr
Match: XP_023526885.1 (ankyrin repeat-containing protein NPR4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MAYQQPSFYWSYSMANTVSFMASVGIILLTITRVPLKNKFSGCMLTLAMVVAVVFLMFGY 60
           MAY++P  Y  YSMAN VSFMASVG+ILL I+RVPLKN+    +L LAM  AVVFL   +
Sbjct: 354 MAYRRPIQYMIYSMANVVSFMASVGVILLIISRVPLKNRVCSWLLVLAMCAAVVFLALTF 413

Query: 61  LLGVAMINI 70
           L G  M+N+
Sbjct: 414 LQGFIMVNL 422

[Close]

BLAST of CmoCh14G012760 vs. NCBI nr
Match: XP_022955455.1 (uncharacterized protein LOC111457477 isoform X1 [Cucurbita moschata])

HSP 1 Score: 72.4 bits (176), Expect = 2.0e-09
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 0


Query: 1   MAYQQPSFYWSYSMANTVSFMASVGIILLTITRVPLKNKFSGCMLTLAMVVAVVFLMFGY 60
           MAY++P  Y  YSMAN VSFMASVG+ILL I+RVPLKN+    +L LAM  AVVFL   +
Sbjct: 288 MAYRRPVQYLIYSMANVVSFMASVGVILLIISRVPLKNRVCSWVLVLAMCAAVVFLALAF 347

Query: 61  LLGVAMINI 70
           L G  M+N+
Sbjct: 348 LQGFIMVNL 356

The following BLAST results are available for this feature:

BLAST of CmoCh14G012760 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G012760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BBL5	2.3e-11	56.52	Ankyrin repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567...	[more]
A0A1S4E4G3	2.3e-11	56.52	uncharacterized protein LOC107992042 OS=Cucumis melo OX=3656 GN=LOC107992042 PE=...	[more]
A0A6J1GWC0	9.6e-10	59.42	ankyrin repeat-containing protein At5g02620-like isoform X4 OS=Cucurbita moschat...	[more]
A0A6J1GTP7	9.6e-10	59.42	uncharacterized protein LOC111457477 isoform X2 OS=Cucurbita moschata OX=3662 GN...	[more]
A0A6J1GV64	9.6e-10	59.42	uncharacterized protein LOC111457477 isoform X1 OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of CmoCh14G012760 vs. NCBI nr


Match Name	E-value	Identity	Description
TYJ96703.1	4.7e-11	56.52	ankyrin repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_016903123.1	4.7e-11	56.52	PREDICTED: uncharacterized protein LOC107992042 [Cucumis melo]	[more]
KAG6581828.1	1.5e-09	59.42	hypothetical protein SDJN03_21830, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_023526885.1	2.0e-09	59.42	ankyrin repeat-containing protein NPR4-like [Cucurbita pepo subsp. pepo]	[more]
XP_022955455.1	2.0e-09	59.42	uncharacterized protein LOC111457477 isoform X1 [Cucurbita moschata]	[more]

BLAST of CmoCh14G012760 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G012760.1	CmoCh14G012760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane