CmoCh14G011390 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G011390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	F-box protein At5g39250-like
Location	Cmo_Chr14: 8102531 .. 8102878 (-)
RNA-Seq Expression	CmoCh14G011390
Synteny	CmoCh14G011390

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTCTAGCAGTTGAGCCAGGATTCTCAATTTCTATATTTGATACCATGAGTGTATCCGTGCTCGTGAGATGCAAGAATTCCAACAAAGTTACTCAAGTAGTCAATAAATCTGTATTTGATTATTTCGATAAAATGTCAGGTAGGGCATTTTGTTTTGACTATCTTGATTTCTCACATCTCTACCCTCTTGTCTCTGGAATTCGAGCATGGGTCTCATTGCTTTTCTTGGACAACAATGAAAATGACGGTGTAGTTGATGTTAATGGGATAGTAATGGATTTTTGTGATGTTGCAAAGACAAAAGATGAGGTATTATGGCTTTTCGACTTGCTCAATTGGAATTGA

mRNA sequence

ATGACTCTAGCAGTTGAGCCAGGATTCTCAATTTCTATATTTGATACCATGAGTGTATCCGTGCTCGTGAGATGCAAGAATTCCAACAAAGTTACTCAAGTAGTCAATAAATCTGTATTTGATTATTTCGATAAAATGTCAGGTAGGGCATTTTGTTTTGACTATCTTGATTTCTCACATCTCTACCCTCTTGTCTCTGGAATTCGAGCATGGGTCTCATTGCTTTTCTTGGACAACAATGAAAATGACGGTGTAGTTGATGTTAATGGGATAGTAATGGATTTTTGTGATGTTGCAAAGACAAAAGATGAGGTATTATGGCTTTTCGACTTGCTCAATTGGAATTGA

Coding sequence (CDS)

ATGACTCTAGCAGTTGAGCCAGGATTCTCAATTTCTATATTTGATACCATGAGTGTATCCGTGCTCGTGAGATGCAAGAATTCCAACAAAGTTACTCAAGTAGTCAATAAATCTGTATTTGATTATTTCGATAAAATGTCAGGTAGGGCATTTTGTTTTGACTATCTTGATTTCTCACATCTCTACCCTCTTGTCTCTGGAATTCGAGCATGGGTCTCATTGCTTTTCTTGGACAACAATGAAAATGACGGTGTAGTTGATGTTAATGGGATAGTAATGGATTTTTGTGATGTTGCAAAGACAAAAGATGAGGTATTATGGCTTTTCGACTTGCTCAATTGGAATTGA

Protein sequence

MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSHLYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN

Homology

[Close]

BLAST of CmoCh14G011390 vs. ExPASy Swiss-Prot
Match: Q9FL82 (F-box protein At5g39250 OS=Arabidopsis thaliana OX=3702 GN=At5g39250 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-29
Identity = 63/116 (54.31%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           M +  EP F+I +  ++SVSVLV   +S+KV +++N+SVFDY D+ S RA  F+YLD S 
Sbjct: 136 MVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSYRALAFEYLDLSP 195

Query: 61  LYPLVSGIRAWVSLLFLD--NNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
            YP +SGIRAW+SLLF+D  +  +DG++DV GI +DF DVA TK+EVLWL D+L+W
Sbjct: 196 CYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEEVLWLLDMLDW 251

[Close]

BLAST of CmoCh14G011390 vs. ExPASy TrEMBL
Match: A0A6J1EVM4 (F-box protein At5g39250-like OS=Cucurbita moschata OX=3662 GN=LOC111436985 PE=4 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 2.5e-59
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH
Sbjct: 135 MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 194

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 116
           LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN
Sbjct: 195 LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 249

[Close]

BLAST of CmoCh14G011390 vs. ExPASy TrEMBL
Match: A0A6J1ITK0 (F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111479220 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 3.6e-50
Identity = 104/115 (90.43%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTLAVEPGFSISI DTMSVSVLVRCKNSNKV  +VNKS+FDYFDKMS RAFCFDYLDFSH
Sbjct: 135 MTLAVEPGFSISISDTMSVSVLVRCKNSNKVAHIVNKSIFDYFDKMSCRAFCFDYLDFSH 194

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 116
           LYP VSGIRAWVSLLFLD NENDGVVDVNGIVMDFCDVAKTKDEVL L  LLNWN
Sbjct: 195 LYPFVSGIRAWVSLLFLD-NENDGVVDVNGIVMDFCDVAKTKDEVLCLLYLLNWN 248

[Close]

BLAST of CmoCh14G011390 vs. ExPASy TrEMBL
Match: A0A6J1KTX3 (F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111498169 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.3e-36
Identity = 81/114 (71.05%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTL V+P FSI I  T+SVSVLV  K+SNKV ++VNKSVFDY D+ S R   FDYLDFS 
Sbjct: 135 MTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSP 194

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
           LYP VSGIRAW+SLLFLD+  NDG++DV GIVMDFCD A TKDEVLWL DLL+W
Sbjct: 195 LYPFVSGIRAWISLLFLDDG-NDGIIDVFGIVMDFCDAANTKDEVLWLLDLLDW 247

[Close]

BLAST of CmoCh14G011390 vs. ExPASy TrEMBL
Match: A0A6J1H6B9 (F-box protein At5g39250 OS=Cucurbita moschata OX=3662 GN=LOC111460859 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 2.3e-36
Identity = 81/114 (71.05%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTL V+P FSI I  T+SVSVLV  K+SNKV ++VNKSVFDY D+ S R   FDYLDFS 
Sbjct: 135 MTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSP 194

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
           LYP VSGIRAW+SLLFLD+  NDG++DV GIVMDFCD A TKDEVLWL DLL+W
Sbjct: 195 LYPFVSGIRAWISLLFLDDG-NDGIIDVFGIVMDFCDAANTKDEVLWLLDLLDW 247

[Close]

BLAST of CmoCh14G011390 vs. ExPASy TrEMBL
Match: A0A1S3BL55 (F-box protein At5g39250 OS=Cucumis melo OX=3656 GN=LOC103490854 PE=4 SV=1)

HSP 1 Score: 157.5 bits (397), Expect = 3.3e-35
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = 0


Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTL VEP FSI I + +S SVLV  K+SNKV ++VNKSVFDY D+ S RA  FDYLDFS 
Sbjct: 136 MTLPVEPRFSIPISNAVSASVLVGRKDSNKVARIVNKSVFDYIDRTSYRALAFDYLDFSP 195

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
           L+P VSGIRAW+SLLF+D+  NDG +DV GIVMDFCD A TKDEVLWL DLL+W
Sbjct: 196 LHPFVSGIRAWISLLFMDDG-NDGAIDVFGIVMDFCDAANTKDEVLWLLDLLDW 248

[Close]

BLAST of CmoCh14G011390 vs. NCBI nr
Match: XP_022930578.1 (F-box protein At5g39250-like [Cucurbita moschata])

HSP 1 Score: 237.7 bits (605), Expect = 5.1e-59
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 0


Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH
Sbjct: 135 MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 194

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 116
           LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN
Sbjct: 195 LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 249

[Close]

BLAST of CmoCh14G011390 vs. NCBI nr
Match: KAG6581678.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.2 bits (583), Expect = 1.8e-56
Identity = 112/115 (97.39%), Postives = 112/115 (97.39%), Query Frame = 0


Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           M LAVEPGFSISIFDTMSVSVLVRCKNSNK TQVVNKSVFDYFDKMS RAFCFDYLDFSH
Sbjct: 1   MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 60

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 116
           LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN
Sbjct: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 115

[Close]

BLAST of CmoCh14G011390 vs. NCBI nr
Match: XP_022979540.1 (F-box protein At5g39250-like [Cucurbita maxima])

HSP 1 Score: 207.2 bits (526), Expect = 7.4e-50
Identity = 104/115 (90.43%), Postives = 106/115 (92.17%), Query Frame = 0


Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTLAVEPGFSISI DTMSVSVLVRCKNSNKV  +VNKS+FDYFDKMS RAFCFDYLDFSH
Sbjct: 135 MTLAVEPGFSISISDTMSVSVLVRCKNSNKVAHIVNKSIFDYFDKMSCRAFCFDYLDFSH 194

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 116
           LYP VSGIRAWVSLLFLD NENDGVVDVNGIVMDFCDVAKTKDEVL L  LLNWN
Sbjct: 195 LYPFVSGIRAWVSLLFLD-NENDGVVDVNGIVMDFCDVAKTKDEVLCLLYLLNWN 248

[Close]

BLAST of CmoCh14G011390 vs. NCBI nr
Match: KAG7018165.1 (F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 204.1 bits (518), Expect = 6.3e-49
Identity = 101/104 (97.12%), Postives = 101/104 (97.12%), Query Frame = 0


Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           M LAVEPGFSISIFDTMSVSVLVRCKNSNK TQVVNKSVFDYFDKMS RAFCFDYLDFSH
Sbjct: 16  MILAVEPGFSISIFDTMSVSVLVRCKNSNKGTQVVNKSVFDYFDKMSCRAFCFDYLDFSH 75

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDE 105
           LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDE
Sbjct: 76  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDE 119

[Close]

BLAST of CmoCh14G011390 vs. NCBI nr
Match: KAG6592901.1 (F-box protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 161.4 bits (407), Expect = 4.7e-36
Identity = 81/114 (71.05%), Postives = 92/114 (80.70%), Query Frame = 0


Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTL V+P FSI I  T+SVSVLV  K+SNKV ++VNKSVFDY D+ S R   FDYLDFS 
Sbjct: 105 MTLPVQPRFSIPISHTVSVSVLVGRKDSNKVARIVNKSVFDYIDRTSYRTLAFDYLDFSP 164

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
           LYP VSGIRAW+SLLFLD+  NDG++DV GIVMDFCD A TKDEVLWL DLL+W
Sbjct: 165 LYPFVSGIRAWISLLFLDDG-NDGIIDVFGIVMDFCDAANTKDEVLWLLDLLDW 217

[Close]

BLAST of CmoCh14G011390 vs. TAIR 10
Match: AT5G39250.1 (F-box family protein )

HSP 1 Score: 130.6 bits (327), Expect = 8.3e-31
Identity = 63/116 (54.31%), Postives = 87/116 (75.00%), Query Frame = 0


Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           M +  EP F+I +  ++SVSVLV   +S+KV +++N+SVFDY D+ S RA  F+YLD S 
Sbjct: 136 MVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSYRALAFEYLDLSP 195

Query: 61  LYPLVSGIRAWVSLLFLD--NNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
            YP +SGIRAW+SLLF+D  +  +DG++DV GI +DF DVA TK+EVLWL D+L+W
Sbjct: 196 CYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEEVLWLLDMLDW 251

The following BLAST results are available for this feature:

BLAST of CmoCh14G011390 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FL82	1.2e-29	54.31	F-box protein At5g39250 OS=Arabidopsis thaliana OX=3702 GN=At5g39250 PE=2 SV=1	[more]

BLAST of CmoCh14G011390 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EVM4	2.5e-59	100.00	F-box protein At5g39250-like OS=Cucurbita moschata OX=3662 GN=LOC111436985 PE=4 ...	[more]
A0A6J1ITK0	3.6e-50	90.43	F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111479220 PE=4 SV...	[more]
A0A6J1KTX3	2.3e-36	71.05	F-box protein At5g39250-like OS=Cucurbita maxima OX=3661 GN=LOC111498169 PE=4 SV...	[more]
A0A6J1H6B9	2.3e-36	71.05	F-box protein At5g39250 OS=Cucurbita moschata OX=3662 GN=LOC111460859 PE=4 SV=1	[more]
A0A1S3BL55	3.3e-35	69.30	F-box protein At5g39250 OS=Cucumis melo OX=3656 GN=LOC103490854 PE=4 SV=1	[more]

BLAST of CmoCh14G011390 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022930578.1	5.1e-59	100.00	F-box protein At5g39250-like [Cucurbita moschata]	[more]
KAG6581678.1	1.8e-56	97.39	F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022979540.1	7.4e-50	90.43	F-box protein At5g39250-like [Cucurbita maxima]	[more]
KAG7018165.1	6.3e-49	97.12	F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6592901.1	4.7e-36	71.05	F-box protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of CmoCh14G011390 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G39250.1	8.3e-31	54.31	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044207	F-box protein At5g39250-like	PANTHER	PTHR47722	EXPRESSED PROTEIN	coord: 1..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G011390.1	CmoCh14G011390.1	mRNA