CmoCh14G011340 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G011340
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Retrovirus-related Pol polyprotein from transposon RE1
Location	Cmo_Chr14: 8000253 .. 8002259 (+)
RNA-Seq Expression	CmoCh14G011340
Synteny	CmoCh14G011340

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCGCCGACTCATCTATTTTGAATCAGTCTAAAAATTACACGAGTAAGGACTCTGTCATCGTAGGAAACGGTGCATGGTTTTTGGACATTGGTACTCTTTCTCATGTTCCAAATATTCACTCATTAGATGTTTTGGTTGTCTCTCATCTCACTAAAAATCTTCTTTCAATTAGTAAATCAACGTTTGATTTTTCTCTCTTCGTTACATTTACTAATAATTTTCTTACTATCTAGAATCATCAAACAGAAAGGGTGGCGGTAACCGGTAAAAGGGATGAAGAGCTATATGTGTTGGAGCACGACAACTCTGGCTTTATTTATGTCTTTAGAAATAAATCTTTACGTGATTCATATGATTTATGGTATGTTCGCCTGTGTTATATGAATTATTCTATTATTTTTCTTTTTTAAATAAAAAAATGTCATCTTTCTCTTACGTCTTTATTGCCTTCTCTATCACTATGTAGTACTTGTCAGCTTGCGAAAAGTCATCGATTGCCTTATTCTCGCAATGAACATAAGTCGTCTCATGTGTTAGATCTTATTCATTGTGATATTTGGGGTCTTTCCCCCGTTAAATTCAATTCGAGTTTTCTTTACTATGTTATTTTTATGGATGATTATTCTTGATTCACTTGACTTTACCTTTTAAAATTAAAATTTGATTTCTTTGATATTTTTTCTTCAATTTCAAAAATTTATGGAAAATCAATATTATGCTCGTATCAAGGTTTTTCAAAGTGATGGAGGTGTCGAATTTACTAGCACTTGTTTCAAAACTCACTTACATACTTCTGACATCCACCATCAACTCTCTTGTTCATATACACCTACTCAAAATGGTCGTGCGGAGAGAAAACATCGTCATGTGACTGAGACTAACTTGGACCTTCTCTTTCACTCCCATCTTTCTCCTCGTTTCTGGGTTGACGTCTTCAGCACTATAGTGTTATCAACTGGTTGTCTACTCCACTCCTTGAAGGCAAGTCACCATTTAAACTCCTCTATGGCTACTCCTCCGCATTATGACAATTTTCATCCCTTTGGTTGTTGTGTTTATCGCGAGATTATATGCCTAACAAACTTTCTCCCCGTAGCATTCCTTGCATTTTTTTGGGTTATAGTCCCGCTCATAAAAAGTTTTGTTGTCATGATCCCACCACCACTAAGCTATACATCACCCACAATGCTTAATTTGATGAAACTCACTTTTTTGTTGTCCCTAACTCCCAGGCTCAACCTCTTTCCTCTTTTCATATTTCAAATTTCTTGTAACCGCATCTTTACCATATACATTCATTCCCCTACCACTTCTTCACCGCACATTCTTCGATCTAGTTCATCCCTGTGTGATATTTGTTCTGATCTTGTGGATGAATCTGTATAGGTACTTCTCTTGTAGGTTCCTCTTTGCCACCCTCGACTTTTGATTCGACCTCTATTGAACCTTTTGCTAATCCTATGATCACACAAGTCAAAGCTGATATCTTCAAGACTTGTCATCCAACAAGTCTGGGTATTTTGGGCTCATTTGGACTTATTTCTACTTTTCTTACATCCACTGAGCCAAAATGATTCAAATCTGCGGCTAAGAATCCTACTTGGGTTGTTGCCTTGGAGGAAGAAATTCGAGCTTTACAACAAAATGACACTTGGACTTTGGTTCCTCGCCCTACCAACACTAACATCGTGGGCTATAAATGGGTGTTTTGCATTAAATATTTGCCTGATGGATCTATCGAGCGTTTCAAGGCTTGTCTTGTTTCCAAAGGTTATACTCAGGTTCCTGGTCTCGACTACATTGGCACTTTCAGTCCAGTTGTCAAAGCTACCACTGTCCGTATTGTGCTTTCTATTGCGATCACAAATAAATGGTCTCTTCGGCAACTTGATGTCAAGAATGCTTTCCTCAATGACACTCTTATTGATCATGTCATATGGAACAACCTCCTGGGTATATTAAAGAAAGCCCTCTATGAGTTAAAGCAAGATCCTCGTGTCTAG

mRNA sequence

ATGACCGCCGACTCATCTATTTTGAATCAGTCTAAAAATTACACGAGTAAGGACTCTGTCATCGTAGGAAACGGTGCATGGTTTTTGGACATTGGTACTTCTCTTGTAGGTTCCTCTTTGCCACCCTCGACTTTTGATTCGACCTCTATTGAACCTTTTGCTAATCCTATGATCACACAAGTCAAAGCTGATATCTTCAAGACTTGTCATCCAACAAGTCTGGGTTATACTCAGGTTCCTGGTCTCGACTACATTGGCACTTTCAGTCCAGTTGTCAAAGCTACCACTGTCCGTATTGTGCTTTCTATTGCGATCACAAATAAATGGTCTCTTCGGCAACTTGATGTCAAGAATGCTTTCCTCAATGACACTCTTATTGATCATGTCATATGGAACAACCTCCTGGGTATATTAAAGAAAGCCCTCTATGAGTTAAAGCAAGATCCTCGTGTCTAG

Coding sequence (CDS)

ATGACCGCCGACTCATCTATTTTGAATCAGTCTAAAAATTACACGAGTAAGGACTCTGTCATCGTAGGAAACGGTGCATGGTTTTTGGACATTGGTACTTCTCTTGTAGGTTCCTCTTTGCCACCCTCGACTTTTGATTCGACCTCTATTGAACCTTTTGCTAATCCTATGATCACACAAGTCAAAGCTGATATCTTCAAGACTTGTCATCCAACAAGTCTGGGTTATACTCAGGTTCCTGGTCTCGACTACATTGGCACTTTCAGTCCAGTTGTCAAAGCTACCACTGTCCGTATTGTGCTTTCTATTGCGATCACAAATAAATGGTCTCTTCGGCAACTTGATGTCAAGAATGCTTTCCTCAATGACACTCTTATTGATCATGTCATATGGAACAACCTCCTGGGTATATTAAAGAAAGCCCTCTATGAGTTAAAGCAAGATCCTCGTGTCTAG

Protein sequence

MTADSSILNQSKNYTSKDSVIVGNGAWFLDIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLGILKKALYELKQDPRV

Homology

[Close]

BLAST of CmoCh14G011340 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.6e-16
Identity = 45/87 (51.72%), Postives = 55/87 (63.22%), Query Frame = 0


Query: 75   GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWN-- 134
            GY Q PGLDY  TFSPV+K+T++RIVL +A+   W +RQLDV NAFL  TL D V  +  
Sbjct: 1025 GYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDDVYMSQP 1084

Query: 135  ---------NLLGILKKALYELKQDPR 151
                     N +  L+KALY LKQ PR
Sbjct: 1085 PGFIDKDRPNYVCKLRKALYGLKQAPR 1111

[Close]

BLAST of CmoCh14G011340 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 7.3e-16
Identity = 44/87 (50.57%), Postives = 54/87 (62.07%), Query Frame = 0


Query: 75   GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNL 134
            GY Q PGLDY  TFSPV+K+T++RIVL +A+   W +RQLDV NAFL  TL D V  +  
Sbjct: 1008 GYNQRPGLDYAETFSPVIKSTSIRIVLGVAVDRSWPIRQLDVNNAFLQGTLTDEVYMSQP 1067

Query: 135  LGI-----------LKKALYELKQDPR 151
             G            L+KA+Y LKQ PR
Sbjct: 1068 PGFVDKDRPDYVCRLRKAIYGLKQAPR 1094

[Close]

BLAST of CmoCh14G011340 vs. ExPASy Swiss-Prot
Match: P10978 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum OX=4097 PE=2 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-07
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 0


Query: 75  GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNL 134
           G+ Q  G+D+   FSPVVK T++R +LS+A +    + QLDVK AFL+  L + +     
Sbjct: 882 GFEQKKGIDFDEIFSPVVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQP 941

Query: 135 LGI-----------LKKALYELKQDPR 151
            G            L K+LY LKQ PR
Sbjct: 942 EGFEVAGKKHMVCKLNKSLYGLKQAPR 968

[Close]

BLAST of CmoCh14G011340 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 56.2 bits (134), Expect = 3.7e-07
Identity = 33/85 (38.82%), Postives = 46/85 (54.12%), Query Frame = 0


Query: 75   GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNL 134
            G+TQ   +DY  TF+PV + ++ R +LS+ I     + Q+DVK AFLN TL + +     
Sbjct: 962  GFTQKYQIDYEETFAPVARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLP 1021

Query: 135  LGI---------LKKALYELKQDPR 151
             GI         L KA+Y LKQ  R
Sbjct: 1022 QGISCNSDNVCKLNKAIYGLKQAAR 1046

[Close]

BLAST of CmoCh14G011340 vs. ExPASy TrEMBL
Match: A0A438HTE5 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2397 PE=4 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 9.9e-24
Identity = 81/204 (39.71%), Postives = 102/204 (50.00%), Query Frame = 0


Query: 1   MTADSSILNQSKNYTSKDSVIVGNGAWFLDIGTSLVG----------------------- 60
           MT D S L+++ NYT KD V+V NGA  L I T +                         
Sbjct: 260 MTPDLSHLDRASNYTGKDRVVVRNGA-SLPITTPVPSLLPHLLSYWIIVKWEGWWQPHYS 319

Query: 61  --------------------SSLPPSTFD---STSIEPFANPMITQVKADIFKTCHPTSL 120
                               +S PP   D   + ++   ++ M+T+ KA IFKT HP +L
Sbjct: 320 LHHQPFAHTASRRSIFPVSEASPPPVASDVAPTLALPLGSHSMLTRAKASIFKTRHPANL 379

Query: 121 --------------------GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQL 139
                               GYTQVPGLDY  TF+PV+K T VR+VLS+A+TNKW LRQL
Sbjct: 380 NTKYLPDGSIEHLKARLVAKGYTQVPGLDYTNTFNPVIKVTIVRVVLSLAVTNKWPLRQL 439

[Close]

BLAST of CmoCh14G011340 vs. ExPASy TrEMBL
Match: A0A438GM61 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2384 PE=4 SV=1)

HSP 1 Score: 116.7 bits (291), Expect = 8.4e-23
Identity = 80/203 (39.41%), Postives = 90/203 (44.33%), Query Frame = 0


Query: 29  LDIGTSLVGSSLPPSTFDSTSIEPFA--------NPMITQVKADIFKTCHPTSL------ 88
           + + TSL GSSLPP      SIE  A        +PMIT+ KA IFKT HP +L      
Sbjct: 505 VQVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSS 564

Query: 89  ------------------------------------------------------------ 139
                                                                       
Sbjct: 565 GLLSALLASTKPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFR 624

[Close]

BLAST of CmoCh14G011340 vs. ExPASy TrEMBL
Match: A0A438GVS0 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=29760 GN=RE1_2440 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 4.2e-22
Identity = 77/171 (45.03%), Postives = 87/171 (50.88%), Query Frame = 0


Query: 28  FLDIGTSLVGSSLPPSTFDSTSIEPF--------ANPMITQVKADIFKTCHPTSLGYTQ- 87
           FL + TSL GS LPP      SIE          ++PMIT+ KA IFK  HP +LG    
Sbjct: 38  FLVVDTSLAGSFLPPLASSPHSIELATDSSSSLGSHPMITRAKAGIFKARHPANLGNPAW 97

Query: 88  ----------------------------VPGLDYIGTFSPVVKATTVRIVLSIAITNKWS 147
                                       VPGLDY  TFS VVKATTVR+VL +A+TNKW 
Sbjct: 98  LAAMDEEVQALQQNGTWILVSWPVNTNIVPGLDYTDTFSLVVKATTVRVVLFLAVTNKWP 157

Query: 148 LRQLDVKNAFLNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR 151
           LRQLDVKN FLN TL +HV      G           +LKKALY LKQ PR
Sbjct: 158 LRQLDVKNTFLNGTLTEHVYMEQPPGYIDSRFPTHVYLLKKALYGLKQAPR 208

[Close]

BLAST of CmoCh14G011340 vs. ExPASy TrEMBL
Match: A5C5R8 (Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_032383 PE=4 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 5.5e-22
Identity = 70/141 (49.65%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 24  NGAWFL---DIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVP 83
           NG W L    + T++VGS     T      + F +  + ++KA +       + GYTQVP
Sbjct: 733 NGTWILVPRPVNTNIVGSKWVFRT------KYFPDGSVERLKARL------VAKGYTQVP 792

Query: 84  GLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLG---- 143
           GLDY  TFSPVVKATTVR+VLS+A+TNKW LRQLDVKNAFLN TL +HV      G    
Sbjct: 793 GLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDP 852

Query: 144 -------ILKKALYELKQDPR 151
                  +LKKALY LKQ PR
Sbjct: 853 RFPTHVCLLKKALYGLKQAPR 861

[Close]

BLAST of CmoCh14G011340 vs. ExPASy TrEMBL
Match: A0A438EBA0 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_2065 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.1e-21
Identity = 69/141 (48.94%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 24   NGAWFL---DIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVP 83
            NG W L    + T++VGS     T      + F +  + ++KA +       + GYTQVP
Sbjct: 902  NGTWILVHRPVNTNIVGSKWVFRT------KYFPDGSVERLKARL------VAKGYTQVP 961

Query: 84   GLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLG---- 143
            GLDY  TFSPVVKATTVR+VLS+A+TNKW LRQLDV NAFLN TL +HV      G    
Sbjct: 962  GLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVNNAFLNGTLTEHVYMEQPPGYIDP 1021

Query: 144  -------ILKKALYELKQDPR 151
                   +LKKALY LKQ PR
Sbjct: 1022 RFPTHVCLLKKALYGLKQAPR 1030

[Close]

BLAST of CmoCh14G011340 vs. NCBI nr
Match: RVW87709.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 119.8 bits (299), Expect = 2.1e-23
Identity = 81/204 (39.71%), Postives = 102/204 (50.00%), Query Frame = 0


Query: 1   MTADSSILNQSKNYTSKDSVIVGNGAWFLDIGTSLVG----------------------- 60
           MT D S L+++ NYT KD V+V NGA  L I T +                         
Sbjct: 260 MTPDLSHLDRASNYTGKDRVVVRNGA-SLPITTPVPSLLPHLLSYWIIVKWEGWWQPHYS 319

Query: 61  --------------------SSLPPSTFD---STSIEPFANPMITQVKADIFKTCHPTSL 120
                               +S PP   D   + ++   ++ M+T+ KA IFKT HP +L
Sbjct: 320 LHHQPFAHTASRRSIFPVSEASPPPVASDVAPTLALPLGSHSMLTRAKASIFKTRHPANL 379

Query: 121 --------------------GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQL 139
                               GYTQVPGLDY  TF+PV+K T VR+VLS+A+TNKW LRQL
Sbjct: 380 NTKYLPDGSIEHLKARLVAKGYTQVPGLDYTNTFNPVIKVTIVRVVLSLAVTNKWPLRQL 439

[Close]

BLAST of CmoCh14G011340 vs. NCBI nr
Match: RVW73295.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 116.7 bits (291), Expect = 1.7e-22
Identity = 80/203 (39.41%), Postives = 90/203 (44.33%), Query Frame = 0


Query: 29  LDIGTSLVGSSLPPSTFDSTSIEPFA--------NPMITQVKADIFKTCHPTSL------ 88
           + + TSL GSSLPP      SIE  A        +PMIT+ KA IFKT HP +L      
Sbjct: 505 VQVDTSLAGSSLPPLASSPHSIEHAADSSSSLGSHPMITRAKAGIFKTRHPANLGVLGSS 564

Query: 89  ------------------------------------------------------------ 139
                                                                       
Sbjct: 565 GLLSALLASTKPKGFKSAAKNPAWLAAMDEEVQALQQNGTWILVPRPVNTNIVGSKWVFR 624

[Close]

BLAST of CmoCh14G011340 vs. NCBI nr
Match: RVW76295.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 114.4 bits (285), Expect = 8.6e-22
Identity = 77/171 (45.03%), Postives = 87/171 (50.88%), Query Frame = 0


Query: 28  FLDIGTSLVGSSLPPSTFDSTSIEPF--------ANPMITQVKADIFKTCHPTSLGYTQ- 87
           FL + TSL GS LPP      SIE          ++PMIT+ KA IFK  HP +LG    
Sbjct: 38  FLVVDTSLAGSFLPPLASSPHSIELATDSSSSLGSHPMITRAKAGIFKARHPANLGNPAW 97

Query: 88  ----------------------------VPGLDYIGTFSPVVKATTVRIVLSIAITNKWS 147
                                       VPGLDY  TFS VVKATTVR+VL +A+TNKW 
Sbjct: 98  LAAMDEEVQALQQNGTWILVSWPVNTNIVPGLDYTDTFSLVVKATTVRVVLFLAVTNKWP 157

Query: 148 LRQLDVKNAFLNDTLIDHVIWNNLLG-----------ILKKALYELKQDPR 151
           LRQLDVKN FLN TL +HV      G           +LKKALY LKQ PR
Sbjct: 158 LRQLDVKNTFLNGTLTEHVYMEQPPGYIDSRFPTHVYLLKKALYGLKQAPR 208

[Close]

BLAST of CmoCh14G011340 vs. NCBI nr
Match: CAN73071.1 (hypothetical protein VITISV_032383 [Vitis vinifera])

HSP 1 Score: 114.0 bits (284), Expect = 1.1e-21
Identity = 70/141 (49.65%), Postives = 85/141 (60.28%), Query Frame = 0


Query: 24  NGAWFL---DIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVP 83
           NG W L    + T++VGS     T      + F +  + ++KA +       + GYTQVP
Sbjct: 733 NGTWILVPRPVNTNIVGSKWVFRT------KYFPDGSVERLKARL------VAKGYTQVP 792

Query: 84  GLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLG---- 143
           GLDY  TFSPVVKATTVR+VLS+A+TNKW LRQLDVKNAFLN TL +HV      G    
Sbjct: 793 GLDYTDTFSPVVKATTVRVVLSLAVTNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDP 852

Query: 144 -------ILKKALYELKQDPR 151
                  +LKKALY LKQ PR
Sbjct: 853 RFPTHVCLLKKALYGLKQAPR 861

[Close]

BLAST of CmoCh14G011340 vs. NCBI nr
Match: RVW43615.1 (Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera])

HSP 1 Score: 112.1 bits (279), Expect = 4.3e-21
Identity = 70/141 (49.65%), Postives = 84/141 (59.57%), Query Frame = 0


Query: 24  NGAWFL---DIGTSLVGSSLPPSTFDSTSIEPFANPMITQVKADIFKTCHPTSLGYTQVP 83
           NG W L    + T++VGS     T      +   +  + ++KA +       + GYTQVP
Sbjct: 718 NGTWILVPRPVNTNIVGSKWVFRT------KYLPDGSVERLKARL------VAKGYTQVP 777

Query: 84  GLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWNNLLG---- 143
           GLDY  TFSPVVKATTVR+VLS+AITNKW LRQLDVKNAFLN TL +HV      G    
Sbjct: 778 GLDYTDTFSPVVKATTVRVVLSLAITNKWPLRQLDVKNAFLNGTLTEHVYMEQPPGYIDP 837

Query: 144 -------ILKKALYELKQDPR 151
                  +LKKALY LKQ PR
Sbjct: 838 RFPTHVCLLKKALYGLKQAPR 846

[Close]

BLAST of CmoCh14G011340 vs. TAIR 10
Match: AT4G23160.1 (cysteine-rich RLK (RECEPTOR-like protein kinase) 8 )

HSP 1 Score: 65.5 bits (158), Expect = 4.3e-11
Identity = 36/91 (39.56%), Postives = 52/91 (57.14%), Query Frame = 0


Query: 75  GYTQVPGLDYIGTFSPVVKATTVRIVLSIAITNKWSLRQLDVKNAFLNDTLIDHVIWN-- 134
           GYTQ  G+D+I TFSPV K T+V+++L+I+    ++L QLD+ NAFLN  L + +     
Sbjct: 154 GYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNGDLDEEIYMKLP 213

Query: 135 -------------NLLGILKKALYELKQDPR 151
                        N +  LKK++Y LKQ  R
Sbjct: 214 PGYAARQGDSLPPNAVCYLKKSIYGLKQASR 244

The following BLAST results are available for this feature:

BLAST of CmoCh14G011340 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q94HW2	5.6e-16	51.72	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]
Q9ZT94	7.3e-16	50.57	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
P10978	1.3e-07	39.08	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
P04146	3.7e-07	38.82	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]

BLAST of CmoCh14G011340 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A438HTE5	9.9e-24	39.71	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438GM61	8.4e-23	39.41	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A0A438GVS0	4.2e-22	45.03	Retrovirus-related Pol polyprotein from transposon RE1 OS=Vitis vinifera OX=2976...	[more]
A5C5R8	5.5e-22	49.65	Integrase catalytic domain-containing protein OS=Vitis vinifera OX=29760 GN=VITI...	[more]
A0A438EBA0	2.1e-21	48.94	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]

BLAST of CmoCh14G011340 vs. NCBI nr


Match Name	E-value	Identity	Description
RVW87709.1	2.1e-23	39.71	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW73295.1	1.7e-22	39.41	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
RVW76295.1	8.6e-22	45.03	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]
CAN73071.1	1.1e-21	49.65	hypothetical protein VITISV_032383 [Vitis vinifera]	[more]
RVW43615.1	4.3e-21	49.65	Retrovirus-related Pol polyprotein from transposon RE1 [Vitis vinifera]	[more]

BLAST of CmoCh14G011340 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G23160.1	4.3e-11	39.56	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 74..133 e-value: 3.3E-13 score: 49.8

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G011340.1	CmoCh14G011340.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0034641	cellular nitrogen compound metabolic process
biological_process	GO:0044238	primary metabolic process
molecular_function	GO:0003676	nucleic acid binding