CmoCh14G011020 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G011020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRibulose bisphosphate carboxylase large chain
LocationCmo_Chr14: 7279798 .. 7286869 (+)
RNA-Seq ExpressionCmoCh14G011020
SyntenyCmoCh14G011020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTTGTCGTCGCCATATTCCATATGTCACTTAGTCATCCCTGCCTCGCTGCGGGTCAGCACCTCTGAAAGAAAGGGAGGACTTCATTTAGTGACTCCGCGATCGCCCTTTGAACGATCAGAATAAGGTAAAGCTTGAAGATAAGTTTTGTACTCTATTAATTTCTCAGTCCCTCTAGTCGGGTGGGCTAGGCTGGGCTTTCGACCGGATCCCCCTAAAAACCGTACGTGCGAGTCTCCCCACATGTGGCTCACGCCATTCGATGTGGCCCAGCATTCATTCGCAAATCAATCCTGTAGTGAAATTAAGACTTCTTGACCTCGGAAGCTAATTCGCGTGTAGGCAGCTCTCTGTCTGTCGTACCGTTGACTCGAGATCTATTCATTGAATTGACTTTAGGCTCGCTCCCTCCCTCTTTTTCCAAGAATTGATGCACTTCCCTTTACTTCATAGGTTCTTTGATTGATAATAGGGGAAAAGCCTTTGATTTCTGTCAAATGACCAGGCCTCCCCTTGCTCTTCCACCGTCCGGGCTACCTTTTCTGCCTATGCTATGCTCCCCCGGCACAGGCCTACCACGCTTCGCACCTGCGGCGTTTTCGCCAGACGGTCTTTGTCAGTAGTGCCATCCTCCCCGCTGGCTGTATGGGCAGGTTGCCCTTCGCTGCTGTGTTCTGTTAGGCTATGGATTATAGGAACAAATGTAGTTGAATGAGACTGCAGGCAGGTTACACGTTCCACCGTGCCGAGATGCGAGTGAGGTGCAGGTGGTGATGATCACCCTGGGGTATGCGCGAGAGCCCTTGACAAGCACTCCAGGACCTGCCAACACTCATGAAAACCCAGATCGGTCCTCCTACGACCAGAGGTGTGGATAACGAGGCTACCTTCACAACCTTCTCCCTTTTGTCCCTATCTTGTAGTAAGGTAGGGCGGTTCGCTTGAGTAGCTCAACCGCCCCCCGGTGCTCATGATGCGCTACGGAGGGAACCTCCACCGTGTCAAGGGACCAAGCAGGGCATAGCTAGCGGCATAGGAGCCGACTCTGCGTCAGCGGCTTCGTGCTGCACTGGAGTAATCCAATATGTGGTTCCGCACGTTCCACCACTTCTCCGTTCATTTTCAATACTGATCATGAAACACCATGAGCAGCAGGATGTTGAGGTTCGGAATTCGAAGTGAAATTTGTTATTTGCCTCTTACTAGTCGTCGTGGGAAAAAAAGGCAGAAAGAAGAAAGATAATATTCCCTCTGAACTTGGACAATAATACCAGTACAAAAAATGCATCTCCTGAACCTTAGCAGCAGCTGAAAGAAAAGAAATTCTATCTACATATAACTGTAAAAGTTCGTAAGACCTTTTTCCCTAAGGAAAGTAGCTGAAAGAAAAGAAATTCTATCTACATATAACTGTAAAAGTTTGTAAGATCTTTTTCCCTAAGGAAAGCTGCTTCAATCAAATATTTTGTATCCAGCATAGGGGTAAAACAGTAAAATCATTTTTTCCCTAATAGCGGGAGCTGAAATCAAATCTTTTTTTATCCCCATTTAATTGTAAAACATTAGAATTGAGGTCTTTTGGGCCGAGGTAATTCATAAGTCAATCCTAAAGATGAATGAGAGTTAACTATCAGTCAATCCTCAACTTTCTCTTCATTCTCCTTTAAAGACGGAGATTAGAGTGGTCCTTTCTCTCCTCCACCCATCCGCGGGTTCAATATCCATCTCCGCAGATATTTTCTGATCGGAGACATAACTCTGCCTGTGACACTGGAATCTCTTTCTGACATTTCCGGAAAGTGAACGGACAGCAGCCCTTCCCCCTTCTCACAATGTTACCGAACTTGCTAAAGAATCAAACAAAGTGTGAATGGAACTTAGAAGTGCTTCATGGGGTCGACGTGGGGAACTTCCACAGGTTCTGGAGCCAGCGGGTTCTGTGAATGAACTCCCTCTTACGGTTAAAAAAGAAAGTAGTTAACCACCTCGAAGAAATCCAAAGTACGACCAAACTGAGAGTGAGTAGCATAAAGTCAAGAAAGATAGATTTGTGAATGAGAAAGATTTTCTATCTTCATAATAGGAATCCATGGGATTATTTCAAATGGCTCAATAGGACTGTGTGCAGTTACACTAACCTAGTCGACGGGTGAGGTTCTAGAGGGACCCACTTCTTTAGCTATAGTAAGTACTTCTGTTTTAGTAAGTTCAAAAAACTTCAGTCTTGTCCCATCATGCCCCACATGACTCTCCGAACAATAGAGTCCTTTCCCACTATTTGCCTTCAGGATCTATTGAAGAGTTTCCTAATGATGCACAATAAAAGATCTATTATATATATAAGTGAAAAACATAATCTCGGACCGAGTAAAACAACAAACTTGATAAAAACTTGGTTCTCTCGCCCGAATTGGAGACAAAATGAAAAGCTTGCATTTTCTTTGATTTCTTCTTTGACTACTCCGCTCATCCCCAAAAATGAAGAAAGACTTGTCGGAGCCGGGTTGGTTGGTCCGAAAAGGATAGGAAAAGGGGAAGGGAAGAGGTCTGTAGAGTCTTGACTTTCAATTTCAAGAGAAAGAAATAATATGCTTTACTGAGTGAAAGACTGAAATGACCAACAAAATAGGGAGAGGAGTCAATTAATTAGCTACTAAACCTATTTCCCTTGTGAAAGACAGAAATGACCAACAAAATAGGGAGAGGCGAAGCAAGCGAAGTAGTTCTGTCTCATGACTCTTGAGTTTAGGCTTGACTTCCTTAATCCAATAACTTCTGGTAATATCGGAAAAGGAGCAGTTAAGTTTGATTCTCCCTATCATTGTAAATGAGAATGCATCGAGAGTCTTCTTTTACAGTTAGTTCTGGAGAGAGAGTCCATGAATTAGCCGCTTTATCGAGTTCAATAAGGGAAGGGAAGTAGTTATTGATAATTCTTCTTCTTGAGTATTGATCTTTTACAGTTCAGGGAGAGGAAACGAACAACAAGAACTGCTGGGAAGAGATAGAGGCTCAGTAGTTCAGTCGAATGAATCAAGCTTCAGTCTTTACTTGATGAATAAGGAGGTGAAGGAGCGAAGCCAGCCGGCCAGTTCCTTCCAACCCAGCCAGTTCCTTCCCTTCCTATTCTGTCTCATTCTTGCTTCTTTCTTACAGGAGAGTGAGTGAAAGAATCATCCTCCATCTAGTTTACCTTGTTCAATCAGGTTCAGAAGAAGGAATAAGGAAAGAAAGGAGTGTTTAAAGTCGAGTCAATTCATTAGCTGCTTTACCGGGTGATAGTCAAACCCCAGCCAGTTCAAGAATAGTTAGTTCAACCCTAGTGAAAGAAGTCAGAGAACCTAGATTAAAGCTATCTTGTGATCATAATTGCATTGCTTTAGAGTGAAAGAAAGGATCAGATCTAGAATGAATAAGGAGTCTTTATAAGGGAGAGTCCATTCAGATTCAATCTCGAACCTTTATCAATCTCCTTCACCTGTCCTAAGGTAAAGCAATTCCATTGCCGGAGCTACTGAATGAAACCCTGAGACTACTGAACCACACCTTCTTTCACTCTTTCTTTCACAAGGGCCAAAAGATGAAATCAAGCTTAATGAGAGTGAACCTATCCTGAACTGGACGTAAAGAGTAAACAAGCAAGAATGATCCTACCTATCCTTCGCTACTTCCTGAACTCAATCACTAGAAGTCAAGACGAAACTAGAAGAGAGACTCTCAATCAAGCTCCTACTGAACTGTAAAAGAAGAAGTTAATGAGACTGAACCTCGGCTTCGCGCCTTTCCTCTTCATGATCCGATTCCTTCAGGAACAGTAAACTGGGAATCTTAGCTCTGATCTTTCTCCTGATTGAACAAGATAAACTCAATCACTTGTCCCTACCCTATGTTCTTCTTTGTAAACTCACTCTGCCTTCTTGAACAACTCTCCCTATCGGTTGGTTTCTACGCTTAGCTTATTCGCCTCTACTCTAACCCTCGGGCTCACACACAATTCCATTGCCTGAACCTCTACAGGAAGTCAAGCCGAAACAAGCAAGAATGAGAGAGACTGATTTCACTCTTTCCCAAGGTAAATAGGTGTTCAGTAGCTCTTTGTTTGATTGAACGAACTGTAAAGCTGAAAGATGAATGGAATGAGAGTGAGTAAATTCATTAATTAGCTATTGAACCCGAACCTGATTGAATGAATGAGTTTACAGTGAAAGAAGAAGAATCCTTTATTCCTTTACAGTTCAAGAAAGTGTTGAAAGGAAAGACGGGAGATAAGACAAAGACTCCTGATCCTGTAAAGACCATTGATGATTTAGTTTCTTCTGACTTTCCCGGGATTTTCGTTCATTTCTCTTTTTCACTAACAAAAGCTGCTTCAATTAATTAGAGTTGATGCTTTACGTTTCATTCTCTCTTTTTCACTAACAAAAGCTGCTGAAATTAATTAGAGTTTTTACTTTCCGGGGATTTAGGGCCATTTTCCCTTATTGAAGGAGGTAACATAGTAGTTAGTCTTTCTCCGTAACCTCCGCCTTCACTCCTCTTTCTTTATTCAAACAAAGACAAGGTAAACTCATGAACTACTTCACGAACCAGATTGAACTGTAAGAAAAGGGATGAATTCGACTTAACTACTTCCTCTGAACCTATACAACGAGGTAAAGCAATTACATTGCCTGAACCAACAAGGGAAAAGAAAAAGAGAAATACGTGAGATTCATTCGACTGAACTGCCCCTCTCCCTCGCGGTCTCGCTCTTTCACCCCTCGTAAACTACCTTCTTCTCTACTTACTCCTAAACCTCTATTCCCTTCCCTTTCCAGTCGAGTAAATGAATGCAAGAATTAGAAGAAAATGAAAGATCAATAGTTCAACCAACGCTTGTTTACAAGAGAAAAAAAGATAAGAGAATGAAAGAAGGGAGACAAGACAAAGACTCCTGATCCTCCTTCTCCTATTGATGGAACTCTGGAACTGATATGATATGCCGTTCGCTACTTCACCTTTCGAGAATGCCAGAAGGGAAAGAGGAAGAAAGAAACATTAATGATCCTGAACTGTAACCGATAGAGAAAGAAGGGAGAGTGGAGAGTCTCGACTCAACATTCATTCTCCTTCACGGGAAGTCAATCCTCAATTCATTAGCGGCTTTACGGTCGGTAAAAGACTCAAGAAGAATTCTCCTGACCCTGAACCGATATTCCCTATTTTTTCGTTCATTTAACTCTTTTACATAGGCTGTATGAGAATCAGGAAAAGCTCCTCTCCCTCGCGGTCGAGCTGTTTCACTCCTTCCCCTATCGGTTTGTCTCATTGCTGCATTTCACTCCTTTTCCTATTCCTATGGATTCTTTCTCCTGAATTGGACCTGAACCTGATTTCACAAGGTCAAATCAAATGAAAGGATGTAAGAGAAGAAGAAAGATTAGAACTTGACACGTGGCCGGTCTCTCTCTCATCTCTTCTTTCCTTCACTTTCTTTCACTCCTGAACCTGAACAACCTGATTTGACTCATGAACCTAGTAAACAAGGATTTAACTATTCGATCACTCGTTAAAGCTATATTTTATAATCTTCTTCTTCTTTCTTTCCCCTTATTATGTTACTATTCAATTCTGAACCTCTTCTTTCTTTATGGTCTCATTGGTTCGCCCATTCACCTGAACCTTGTAACCCTATTCAGTTAAAGAGGAAGTGGTTGAGACGAGAGCTCCTTCCCCGATATTCCCCCTTGCTTGATTTCCAGAGGTAAAGGAGCTTGGGTTGGATGATAGATAAGAACCTTTTCTTTGACTTTATTCCTTTCTGTTCTAGTTCTTTCCCTTCAAAGACTCGGTCGGTAAACAGGAGGATGATTCTTTCACTCTTTTACTCGGTAAAGCTAGCACTAAGAAAAAGTCTGCGTTCTATTCCTTGTGGTCTCATTGCTGCGCTCCTCTCCCCGATTCCTTGTTTGACTGCTTGCTTCGTGCTTCTTCTCGTTTTCGTTGCTGCGCTCCTCTCCCTCCCGGCCCGATCTATCGAGTTGCTTCGCTTCGCTCCTCTCCCTTCTTTCAAAGACTTACAACTCTCATTCATCTTTCATTTGCAGCTCCCTTTTATAGTAAACTCGGATAGTTAAAGGTTTTTGGTTTCTTCTTTCTTTGTTTCCAGTTCAATCAGATAATAGAGTCAAAGGTGTAGGTCAGGTAATATTGGTTCAGGAAGTAGCTCAGGTCATATCGGTCGCTTCTCTTTCATTCTCTGATTCTTCTTCTTTCTATTTCTATAATTGTAACAAGTATAGGTTCAGTTGCTGCAAGGAATGGACTCTGCCTTCTAACAGTGCAGTCTCACCTTTTCTTTCATCTTTCGTCTTGATCCTTATGATTTATTAAGGTAAAGATTAATCTTTCATCTTAGTTTACAGTTCAATCCGGTCAGGTAATATTGGTTCTGGTTCAGCAGCTCTTTTTCGGTGGATTCGATTCTTCTTTTCTTTCTTTTTTCTTTCAATATTTTGAGGCAAAAGATTACAAACTTGAAAAAGGATTGAGTTGCGCCATACAAGAGTAAACAATAATGCTTTGGTGAATCAAATACCCTGGTGTCTAATAACGAACCATTCTTCTTTCTAATATTAATTGAGAATTTTGTGAAAGGATTCCTATCCTATACCTATAAAAGATTGAATTAACCCCTAATTCATGTCGAGTAGACCTTGTTGTTGCGAGAATGATGAATGAATGAGTTGTAGGGAGCGAAGGGCCTTATGTCACCACAAACTGAGACTAAAGCAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGTCAAGATTCTACAGTCACTTATGATACTCCTGAATATGAAACCAAAGATACTGAGATCTTGGCTGGGAGCATTCCGAGTAACTCCTCCACCGGGAATTCCAAGGAAGCTGGGGTCGTTGTAGCTGTTGAATCTTCTACTAGTACATGGACAACTGACCGATGGGCTTACCAACCAGTCTTGATCCTTACAAAGGACGATGCTATGGAATTATGGAATCGAGCCTGTCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATCTAG

mRNA sequence

ATGCTGTTGTCGTCGCCATATTCCATATGTCACTTAGTCATCCCTGCCTCGCTGCGGGCCTCCCCTTGCTCTTCCACCGTCCGGGCTACCTTTTCTGCCTATGCTATGCTCCCCCGGCACAGGCCTACCACGCTTCGCACCTGCGGCGTTTTCGCCAGACGGTCTTTGTCAGTAGTGCCATCCTCCCCGCTGGCTGTATGGGCAGGCAGGTTACACGTTCCACCGTGCCGAGATGCGAGTGAGGTGCAGGTGGTGATGATCACCCTGGGGTATGCGCGAGAGCCCTTGACAAGCACTCCAGGACCTGCCAACACTCATGAAAACCCAGATCGGTCCTCCTACGACCAGAGTTCAGGGAGAGGAAACGAACAACAAGAACTGCTGGGAAGAGATAGAGGCTCAGTAGTTCAGTCGAATGAATCAAGCTTCAGTCTTTACTTGATGAATAAGGAGGTGAAGGAGCGAAGCCAGCCGGCCAGTTCCTTCCAACCCAGCCAGTTCCTTCCCTTCCTATTCTGTCTCATTCTTGCTTCTTTCTTACAGGAGATCACTTATGATACTCCTGAATATGAAACCAAAGATACTGAGATCTTGGCTGGGAGCATTCCGAGTAACTCCTCCACCGGGAATTCCAAGGAAGCTGGGGTCGTTGTAGCTGTTGAATCTTCTACTAGTACATGGACAACTGACCGATGGGCTTACCAACCAGTCTTGATCCTTACAAAGGACGATGCTATGGAATTATGGAATCGAGCCTGTCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATCTAG

Coding sequence (CDS)

ATGCTGTTGTCGTCGCCATATTCCATATGTCACTTAGTCATCCCTGCCTCGCTGCGGGCCTCCCCTTGCTCTTCCACCGTCCGGGCTACCTTTTCTGCCTATGCTATGCTCCCCCGGCACAGGCCTACCACGCTTCGCACCTGCGGCGTTTTCGCCAGACGGTCTTTGTCAGTAGTGCCATCCTCCCCGCTGGCTGTATGGGCAGGCAGGTTACACGTTCCACCGTGCCGAGATGCGAGTGAGGTGCAGGTGGTGATGATCACCCTGGGGTATGCGCGAGAGCCCTTGACAAGCACTCCAGGACCTGCCAACACTCATGAAAACCCAGATCGGTCCTCCTACGACCAGAGTTCAGGGAGAGGAAACGAACAACAAGAACTGCTGGGAAGAGATAGAGGCTCAGTAGTTCAGTCGAATGAATCAAGCTTCAGTCTTTACTTGATGAATAAGGAGGTGAAGGAGCGAAGCCAGCCGGCCAGTTCCTTCCAACCCAGCCAGTTCCTTCCCTTCCTATTCTGTCTCATTCTTGCTTCTTTCTTACAGGAGATCACTTATGATACTCCTGAATATGAAACCAAAGATACTGAGATCTTGGCTGGGAGCATTCCGAGTAACTCCTCCACCGGGAATTCCAAGGAAGCTGGGGTCGTTGTAGCTGTTGAATCTTCTACTAGTACATGGACAACTGACCGATGGGCTTACCAACCAGTCTTGATCCTTACAAAGGACGATGCTATGGAATTATGGAATCGAGCCTGTCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATCTAG

Protein sequence

MLLSSPYSICHLVIPASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAGRLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANTHENPDRSSYDQSSGRGNEQQELLGRDRGSVVQSNESSFSLYLMNKEVKERSQPASSFQPSQFLPFLFCLILASFLQEITYDTPEYETKDTEILAGSIPSNSSTGNSKEAGVVVAVESSTSTWTTDRWAYQPVLILTKDDAMELWNRACLFLEKKINILLI
Homology
[Close]
BLAST of CmoCh14G011020 vs. ExPASy Swiss-Prot
Match: A1EA16 (Ribulose bisphosphate carboxylase large chain OS=Agrostis stolonifera OX=63632 GN=rbcL PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-05
Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 182 EITYDTPEYETKDTEILAGSIPSNSSTGNSKEAGVVVAVESSTSTWTT 230
           ++TY TPEYETKDT+ILA    S       +EAG  VA ESST TWTT
Sbjct: 21  KLTYYTPEYETKDTDILAAFRVSPQPGVPPEEAGAAVAAESSTGTWTT 68

[Close]
BLAST of CmoCh14G011020 vs. ExPASy Swiss-Prot
Match: P28413 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Eriodictyon californicum OX=4132 GN=rbcL PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-05
Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 182 EITYDTPEYETKDTEILAGSIPSNSSTGNSKEAGVVVAVESSTSTWTT 230
           ++TY TPEYETKDT+ILA    S       +EAG  VA ESST TWTT
Sbjct: 12  KLTYYTPEYETKDTDILAAFRVSPQPGVPPEEAGAAVAAESSTGTWTT 59

[Close]
BLAST of CmoCh14G011020 vs. ExPASy Swiss-Prot
Match: P05698 (Ribulose bisphosphate carboxylase large chain OS=Hordeum vulgare OX=4513 GN=rbcL PE=3 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-05
Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 182 EITYDTPEYETKDTEILAGSIPSNSSTGNSKEAGVVVAVESSTSTWTT 230
           ++TY TPEYETKDT+ILA    S       +EAG  VA ESST TWTT
Sbjct: 21  KLTYYTPEYETKDTDILAAFRVSPQPGVPPEEAGAAVAAESSTGTWTT 68

[Close]
BLAST of CmoCh14G011020 vs. ExPASy Swiss-Prot
Match: P28425 (Ribulose bisphosphate carboxylase large chain (Fragment) OS=Hydrophyllum virginianum OX=4134 GN=rbcL PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-05
Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 182 EITYDTPEYETKDTEILAGSIPSNSSTGNSKEAGVVVAVESSTSTWTT 230
           ++TY TPEYETKDT+ILA    S       +EAG  VA ESST TWTT
Sbjct: 12  KLTYYTPEYETKDTDILAAFRVSPQPGVPPEEAGAAVAAESSTGTWTT 59

[Close]
BLAST of CmoCh14G011020 vs. ExPASy Swiss-Prot
Match: P11383 (Ribulose bisphosphate carboxylase large chain OS=Triticum aestivum OX=4565 GN=rbcL PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 2.1e-05
Identity = 28/48 (58.33%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 182 EITYDTPEYETKDTEILAGSIPSNSSTGNSKEAGVVVAVESSTSTWTT 230
           ++TY TPEYETKDT+ILA    S       +EAG  VA ESST TWTT
Sbjct: 21  KLTYYTPEYETKDTDILAAFRVSPQPGVPPEEAGAAVAAESSTGTWTT 68

[Close]
BLAST of CmoCh14G011020 vs. ExPASy TrEMBL
Match: A0A075VUZ3 (Uncharacterized protein OS=Capsicum annuum OX=4072 GN=orf166b PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 74/135 (54.81%), Postives = 76/135 (56.30%), Query Frame = 0 

Query: 12  LVIPASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-- 71
           L  P++  ASP SSTVRA F  Y MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG  
Sbjct: 34  LPFPSNDPASPGSSTVRAPFPPYGMLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCP 93

Query: 72  ------------------------RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANT 121
                                   R  VP C    EVQVVMIT GYA  PLT TP PAN 
Sbjct: 94  SLLRSLLLWIKGTNVVEWNSRRVTRSTVPRC----EVQVVMITPGYALAPLTGTPEPANA 153

[Close]
BLAST of CmoCh14G011020 vs. ExPASy TrEMBL
Match: A0A2G3DG47 (Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_02040 PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 74/135 (54.81%), Postives = 76/135 (56.30%), Query Frame = 0 

Query: 12  LVIPASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-- 71
           L  P++  ASP SSTVRA F  Y MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG  
Sbjct: 34  LPFPSNDPASPGSSTVRAPFPPYGMLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCP 93

Query: 72  ------------------------RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANT 121
                                   R  VP C    EVQVVMIT GYA  PLT TP PAN 
Sbjct: 94  SLLRSLLLWIKGTNVVEWNSRRVTRSTVPRC----EVQVVMITPGYALAPLTGTPEPANA 153

[Close]
BLAST of CmoCh14G011020 vs. ExPASy TrEMBL
Match: A0A2G2XFZ5 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_04912 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 1.6e-21
Identity = 72/132 (54.55%), Postives = 75/132 (56.82%), Query Frame = 0 

Query: 15  PASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG----- 74
           P++  ASP SSTVRA F  Y +LPRHRPTTLR CGVFARRSL VVPSSPLAVWAG     
Sbjct: 100 PSNDPASPGSSTVRAPFPPYGLLPRHRPTTLRACGVFARRSLPVVPSSPLAVWAGCPSLL 159

Query: 75  ---------------------RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANTHEN 121
                                   VP C    EVQVVMIT GYA  PLT TP PAN  EN
Sbjct: 160 RSLLLWIKGTNVVEWNSRQVTCSAVPRC----EVQVVMITPGYALAPLTGTPEPANAREN 219

[Close]
BLAST of CmoCh14G011020 vs. ExPASy TrEMBL
Match: A0A2G2X1A9 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_11021 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 2.1e-21
Identity = 72/135 (53.33%), Postives = 76/135 (56.30%), Query Frame = 0 

Query: 12  LVIPASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-- 71
           L+ P++  A P SSTVR  F  Y MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG  
Sbjct: 97  LLFPSNDPAFPGSSTVRDLFPPYGMLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCP 156

Query: 72  ------------------------RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANT 121
                                   R  +P C    EVQVVMITLGYA  PLT TP PAN 
Sbjct: 157 SLLHSLLLWIKGTNVVEWNNRRVTRSTLPRC----EVQVVMITLGYALAPLTGTPEPANA 216

[Close]
BLAST of CmoCh14G011020 vs. ExPASy TrEMBL
Match: A0A2G2X1Y5 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_11186 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.6e-19
Identity = 70/135 (51.85%), Postives = 74/135 (54.81%), Query Frame = 0 

Query: 12  LVIPASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-- 71
           L+ P++  A P SSTV A F  Y MLPR RPTTLR CGVFARR L VVPSS LAVWAG  
Sbjct: 92  LLFPSNDPAFPGSSTVWAPFPLYGMLPRRRPTTLRACGVFARRFLPVVPSSLLAVWAGCP 151

Query: 72  ------------------------RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANT 121
                                   R  +P C    EVQVVMITLGYA  PLT TP PAN 
Sbjct: 152 SLLCSLLLWIKGTNIVEWNNRRVTRSTLPRC----EVQVVMITLGYALAPLTGTPEPANA 211

[Close]
BLAST of CmoCh14G011020 vs. NCBI nr
Match: AIG89984.1 (hypothetical protein [Capsicum annuum] >PHT83357.1 hypothetical protein T459_11800 [Capsicum annuum] >PHU29947.1 hypothetical protein BC332_02040 [Capsicum chinense])

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-21
Identity = 74/135 (54.81%), Postives = 76/135 (56.30%), Query Frame = 0 

Query: 12  LVIPASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-- 71
           L  P++  ASP SSTVRA F  Y MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG  
Sbjct: 34  LPFPSNDPASPGSSTVRAPFPPYGMLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCP 93

Query: 72  ------------------------RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANT 121
                                   R  VP C    EVQVVMIT GYA  PLT TP PAN 
Sbjct: 94  SLLRSLLLWIKGTNVVEWNSRRVTRSTVPRC----EVQVVMITPGYALAPLTGTPEPANA 153

[Close]
BLAST of CmoCh14G011020 vs. NCBI nr
Match: PHT56426.1 (hypothetical protein CQW23_04912 [Capsicum baccatum])

HSP 1 Score: 113.2 bits (282), Expect = 3.4e-21
Identity = 72/132 (54.55%), Postives = 75/132 (56.82%), Query Frame = 0 

Query: 15  PASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG----- 74
           P++  ASP SSTVRA F  Y +LPRHRPTTLR CGVFARRSL VVPSSPLAVWAG     
Sbjct: 100 PSNDPASPGSSTVRAPFPPYGLLPRHRPTTLRACGVFARRSLPVVPSSPLAVWAGCPSLL 159

Query: 75  ---------------------RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANTHEN 121
                                   VP C    EVQVVMIT GYA  PLT TP PAN  EN
Sbjct: 160 RSLLLWIKGTNVVEWNSRQVTCSAVPRC----EVQVVMITPGYALAPLTGTPEPANAREN 219

[Close]
BLAST of CmoCh14G011020 vs. NCBI nr
Match: PHT51274.1 (hypothetical protein CQW23_11021 [Capsicum baccatum])

HSP 1 Score: 112.8 bits (281), Expect = 4.4e-21
Identity = 72/135 (53.33%), Postives = 76/135 (56.30%), Query Frame = 0 

Query: 12  LVIPASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-- 71
           L+ P++  A P SSTVR  F  Y MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG  
Sbjct: 97  LLFPSNDPAFPGSSTVRDLFPPYGMLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCP 156

Query: 72  ------------------------RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANT 121
                                   R  +P C    EVQVVMITLGYA  PLT TP PAN 
Sbjct: 157 SLLHSLLLWIKGTNVVEWNNRRVTRSTLPRC----EVQVVMITLGYALAPLTGTPEPANA 216

[Close]
BLAST of CmoCh14G011020 vs. NCBI nr
Match: KAG9438573.1 (hypothetical protein H6P81_021495 [Aristolochia fimbriata])

HSP 1 Score: 110.2 bits (274), Expect = 2.9e-20
Identity = 69/124 (55.65%), Postives = 71/124 (57.26%), Query Frame = 0 

Query: 12  LVIPASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-- 71
           L  P++  ASP SSTVRA F  YAMLPR  PTTLR CGVFARRSL VVPSSPLAVW G  
Sbjct: 9   LPFPSNDPASPGSSTVRAPFPPYAMLPRRGPTTLRACGVFARRSLPVVPSSPLAVWVGCP 68

Query: 72  ------------------------RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANT 110
                                   R  VP C    EVQVVMIT GYA  PLT TPGPAN 
Sbjct: 69  SLLRSVRLWITGTSVVEWDSRRVTRSTVPRC----EVQVVMITPGYALAPLTGTPGPANA 128

[Close]
BLAST of CmoCh14G011020 vs. NCBI nr
Match: PHT51439.1 (hypothetical protein CQW23_11186 [Capsicum baccatum])

HSP 1 Score: 105.9 bits (263), Expect = 5.4e-19
Identity = 70/135 (51.85%), Postives = 74/135 (54.81%), Query Frame = 0 

Query: 12  LVIPASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-- 71
           L+ P++  A P SSTV A F  Y MLPR RPTTLR CGVFARR L VVPSS LAVWAG  
Sbjct: 92  LLFPSNDPAFPGSSTVWAPFPLYGMLPRRRPTTLRACGVFARRFLPVVPSSLLAVWAGCP 151

Query: 72  ------------------------RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANT 121
                                   R  +P C    EVQVVMITLGYA  PLT TP PAN 
Sbjct: 152 SLLCSLLLWIKGTNIVEWNNRRVTRSTLPRC----EVQVVMITLGYALAPLTGTPEPANA 211

[Close]
BLAST of CmoCh14G011020 vs. TAIR 10
Match: ATCG00490.1 (ribulose-bisphosphate carboxylases )

HSP 1 Score: 50.1 bits (118), Expect = 3.3e-06
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 0 

Query: 182 EITYDTPEYETKDTEILAGSIPSNSSTGNSKEAGVVVAVESSTSTWTT 230
           ++TY TPEYETKDT+ILA    +       +EAG  VA ESST TWTT
Sbjct: 21  KLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTT 68

The following BLAST results are available for this feature:
BLAST of CmoCh14G011020 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A1EA162.1e-0558.33Ribulose bisphosphate carboxylase large chain OS=Agrostis stolonifera OX=63632 G... [more]
P284132.1e-0558.33Ribulose bisphosphate carboxylase large chain (Fragment) OS=Eriodictyon californ... [more]
P056982.1e-0558.33Ribulose bisphosphate carboxylase large chain OS=Hordeum vulgare OX=4513 GN=rbcL... [more]
P284252.1e-0558.33Ribulose bisphosphate carboxylase large chain (Fragment) OS=Hydrophyllum virgini... [more]
P113832.1e-0558.33Ribulose bisphosphate carboxylase large chain OS=Triticum aestivum OX=4565 GN=rb... [more]
BLAST of CmoCh14G011020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A075VUZ35.6e-2254.81Uncharacterized protein OS=Capsicum annuum OX=4072 GN=orf166b PE=4 SV=1[more]
A0A2G3DG475.6e-2254.81Uncharacterized protein OS=Capsicum chinense OX=80379 GN=BC332_02040 PE=4 SV=1[more]
A0A2G2XFZ51.6e-2154.55Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_04912 PE=4 SV=1[more]
A0A2G2X1A92.1e-2153.33Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_11021 PE=4 SV=1[more]
A0A2G2X1Y52.6e-1951.85Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_11186 PE=4 SV=1[more]
BLAST of CmoCh14G011020 vs. NCBI nr
Match NameE-valueIdentityDescription
AIG89984.11.2e-2154.81hypothetical protein [Capsicum annuum] >PHT83357.1 hypothetical protein T459_118... [more]
PHT56426.13.4e-2154.55hypothetical protein CQW23_04912 [Capsicum baccatum][more]
PHT51274.14.4e-2153.33hypothetical protein CQW23_11021 [Capsicum baccatum][more]
KAG9438573.12.9e-2055.65hypothetical protein H6P81_021495 [Aristolochia fimbriata][more]
PHT51439.15.4e-1951.85hypothetical protein CQW23_11186 [Capsicum baccatum][more]
BLAST of CmoCh14G011020 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00490.13.3e-0656.25ribulose-bisphosphate carboxylases [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036422RuBisCO large subunit, N-terminal domain superfamilyGENE3D3.30.70.150coord: 177..242
e-value: 5.2E-5
score: 25.0
IPR036422RuBisCO large subunit, N-terminal domain superfamilySUPERFAMILY54966RuBisCO, large subunit, small (N-terminal) domaincoord: 182..232
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 98..124
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 96..134

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G011020.1CmoCh14G011020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015977 carbon fixation
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity