CmoCh14G010580 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G010580
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	MAGUK p55 subfamily member 4 like
Location	Cmo_Chr14: 5799998 .. 5801390 (+)
RNA-Seq Expression	CmoCh14G010580
Synteny	CmoCh14G010580

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTGTCGGTGGATTTCTTTCATTATATATATTAACAACCTCTCATTACTCTCATTTCCATACCCTTTCTTCTTTCTCTCTCTACAAAAGCAGTGCTGTGGGTGGTGGTCGGCCGGCGAGTCTGGCTGAGCTAGGGTGTCGATTCAGCGGCGGCGGTGGGTGGTTGTTCAGGAAGAGGAAGAAGAAGATTGAAATTAAAGGGTGTGTTGTAATGGGTTTTTGGCGTCAGATTATTTTTCCGGTACGGCGTGTTTGGCTCGCCGTCTATGGCCGTCTTAAAGCTCGCAAAAATGGTTAGTTTTTTTGTTCCCTTTTTGCCCTCCTCTTCGTCCGTACAGTTTATTATTATTATTATTATAGTAATAATTAATGAAATTTATTCCATAATTATATATATATGAGGGAAAAAACAAAATTCCAAATTTGATAAATTTTATTTTTCTTATTTATTATTATTATTATTATTTATACCAAATAAATTATGGTAATTAAAATTAAAAAATGAGGGTTTTAATTAATTAATTAACTTTATAAAGGTGGATTGGATAAAGATGAGATAAAGCAATTTTTTATGCTTCCATGTCATACAGCATTATTAATGGCTTGAAAAAAGAAGAAATTTTGCGTCTTTTTCCCTTTTTTTTTCAAACAAAGATGCTTCCAACAAGGAATCAGATTCATATGGCTTACTCTTTTGTACCACTTCCTATTGTTGCACATCAAAATTAAACTACAAATAGATTATTGAATTTTTGAGGTTGTGGTTCGGCAGATGAAGGACTTTTGAAACTTCATGACGATGTAGAAACGTGTGGCTATCAAGATGTAAAGGTTATGTGGGAAATACTAAAGCAATCGGAAGCTGAGTTGATCAATCATCACCACCAGACACGGCGTAAACATAAGCCATTTTGGAAGGATTTTTTGTGGTCTATCCCTAACTCTGACTCAACTACTAGTACAACTAAAATGATACCTTTTCCGACTTTTAACTCCATTTCGTAGGGTGATAAGTATAAGGGTCTCTACTCTTAAATTTCCTCGAGCAATATAAAAATATCGTGTAAATAGAAATAATAATTGCATCGAAAAGGTTTCTAAGCAAAGAAAAAAAAGCTCAAATTAATACTTGGGCCAAGCGACTTCACTTTTGTTAAAAGGTGTATTGTTAAAAGGTTCTTTTTTCTTCCTTGTGTTGGAGTTTTCAATATTTGCTTCAAATTTAGGACGATCTTACATGAGCCATTTGTTGTAAGATAGTGAAATATTGGAGTTAGAGATAACCATGGGATAGAATCAAAGATCATTTAACGTGATTCTAACGAGTTGTTTCTGTTACGATATATTATAAGATAAGAATAAGGTATGAAGTATATATATTATATGAAAGTGAG

mRNA sequence

CGTGTCGGTGGATTTCTTTCATTATATATATTAACAACCTCTCATTACTCTCATTTCCATACCCTTTCTTCTTTCTCTCTCTACAAAAGCAGTGCTGTGGGTGGTGGTCGGCCGGCGAGTCTGGCTGAGCTAGGGTGTCGATTCAGCGGCGGCGGTGGGTGGTTGTTCAGGAAGAGGAAGAAGAAGATTGAAATTAAAGGGTGTGTTGTAATGGGTTTTTGGCGTCAGATTATTTTTCCGGTACGGCGTGTTTGGCTCGCCGTCTATGGCCGTCTTAAAGCTCGCAAAAATGATGAAGGACTTTTGAAACTTCATGACGATGTAGAAACGTGTGGCTATCAAGATGTAAAGGTTATGTGGGAAATACTAAAGCAATCGGAAGCTGAGTTGATCAATCATCACCACCAGACACGGCGTAAACATAAGCCATTTTGGAAGGATTTTTTGTGGTCTATCCCTAACTCTGACTCAACTACTAGTACAACTAAAATGATACCTTTTCCGACTTTTAACTCCATTTCGTAGGGTGATAAGTATAAGGGTCTCTACTCTTAAATTTCCTCGAGCAATATAAAAATATCGTGTAAATAGAAATAATAATTGCATCGAAAAGGTTTCTAAGCAAAGAAAAAAAAGCTCAAATTAATACTTGGGCCAAGCGACTTCACTTTTGTTAAAAGGTGTATTGTTAAAAGGTTCTTTTTTCTTCCTTGTGTTGGAGTTTTCAATATTTGCTTCAAATTTAGGACGATCTTACATGAGCCATTTGTTGTAAGATAGTGAAATATTGGAGTTAGAGATAACCATGGGATAGAATCAAAGATCATTTAACGTGATTCTAACGAGTTGTTTCTGTTACGATATATTATAAGATAAGAATAAGGTATGAAGTATATATATTATATGAAAGTGAG

Coding sequence (CDS)

ATGGGTTTTTGGCGTCAGATTATTTTTCCGGTACGGCGTGTTTGGCTCGCCGTCTATGGCCGTCTTAAAGCTCGCAAAAATGATGAAGGACTTTTGAAACTTCATGACGATGTAGAAACGTGTGGCTATCAAGATGTAAAGGTTATGTGGGAAATACTAAAGCAATCGGAAGCTGAGTTGATCAATCATCACCACCAGACACGGCGTAAACATAAGCCATTTTGGAAGGATTTTTTGTGGTCTATCCCTAACTCTGACTCAACTACTAGTACAACTAAAATGATACCTTTTCCGACTTTTAACTCCATTTCGTAG

Protein sequence

MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAELINHHHQTRRKHKPFWKDFLWSIPNSDSTTSTTKMIPFPTFNSIS

Homology

[Close]

BLAST of CmoCh14G010580 vs. ExPASy TrEMBL
Match: A0A6J1F2W0 (uncharacterized protein LOC111441680 OS=Cucurbita moschata OX=3662 GN=LOC111441680 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 1.5e-55
Identity = 104/104 (100.00%), Postives = 104/104 (100.00%), Query Frame = 0


Query: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60
           MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL
Sbjct: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60

Query: 61  INHHHQTRRKHKPFWKDFLWSIPNSDSTTSTTKMIPFPTFNSIS 105
           INHHHQTRRKHKPFWKDFLWSIPNSDSTTSTTKMIPFPTFNSIS
Sbjct: 61  INHHHQTRRKHKPFWKDFLWSIPNSDSTTSTTKMIPFPTFNSIS 104

[Close]

BLAST of CmoCh14G010580 vs. ExPASy TrEMBL
Match: A0A6J1J0R9 (uncharacterized protein LOC111482415 OS=Cucurbita maxima OX=3661 GN=LOC111482415 PE=4 SV=1)

HSP 1 Score: 208.8 bits (530), Expect = 1.1e-50
Identity = 96/104 (92.31%), Postives = 100/104 (96.15%), Query Frame = 0


Query: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60
           MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL
Sbjct: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60

Query: 61  INHHHQTRRKHKPFWKDFLWSIPNSDSTTSTTKMIPFPTFNSIS 105
           INHHHQ +RKHK FWKDFLWS PNSDSTTSTT+M+PFPTF+ IS
Sbjct: 61  INHHHQPKRKHKRFWKDFLWSNPNSDSTTSTTEMMPFPTFSPIS 104

[Close]

BLAST of CmoCh14G010580 vs. ExPASy TrEMBL
Match: A0A0A0LD54 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710210 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 4.7e-41
Identity = 83/104 (79.81%), Postives = 92/104 (88.46%), Query Frame = 0


Query: 1   MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60
           MGFW Q+IFPVRRVWLAVYGRLKAR+NDEGLLKLHDDVETCGYQDVKVMWEIL++SEAEL
Sbjct: 1   MGFWHQMIFPVRRVWLAVYGRLKARRNDEGLLKLHDDVETCGYQDVKVMWEILRRSEAEL 60

Query: 61  INHHHQTRRKHKPFWKDFLWSIPNSDSTTSTTKMIPFPTFNSIS 105
           IN HHQ RRKHKPFWK  +WS  NS+S+T+  KM  FPTF+ IS
Sbjct: 61  IN-HHQMRRKHKPFWKALVWSNHNSNSSTNIPKMTNFPTFSPIS 103

[Close]

BLAST of CmoCh14G010580 vs. ExPASy TrEMBL
Match: A0A2P6RV40 (Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0131671 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 3.6e-25
Identity = 58/89 (65.17%), Postives = 73/89 (82.02%), Query Frame = 0


Query: 1  MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60
          M FW ++IFPVRRVWLAV  R+KARKN  GLLKLHDDV+TCGYQDV+VMW++L + EAEL
Sbjct: 1  MEFWDKMIFPVRRVWLAVSTRVKARKNGAGLLKLHDDVQTCGYQDVQVMWQMLSR-EAEL 60

Query: 61 INHHHQTRRKHKPFWKDFLWSIPNSDSTT 90
          INHHH  +RK +PFW+ F WS  +S +++
Sbjct: 61 INHHH-AKRKQRPFWRVFEWSNNHSKASS 87

[Close]

BLAST of CmoCh14G010580 vs. ExPASy TrEMBL
Match: A0A6P5X7I2 (uncharacterized protein LOC111280444 OS=Durio zibethinus OX=66656 GN=LOC111280444 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.7e-25
Identity = 57/90 (63.33%), Postives = 72/90 (80.00%), Query Frame = 0


Query: 1  MGFWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEILKQSEAEL 60
          M  W ++IFPVRRVW AV  R+KARKN EGLLKLHDDV+TCGYQDV+VMWE+L++SE+EL
Sbjct: 1  MDLWHKMIFPVRRVWFAVSSRVKARKNGEGLLKLHDDVQTCGYQDVQVMWEMLRRSESEL 60

Query: 61 INHHHQTRRKHKPFWKDFLWSIPNSDSTTS 91
          I  ++  +RK +PFWK F+WS   S S+ S
Sbjct: 61 IAANN-PKRKQRPFWKGFVWSNHTSSSSFS 89

[Close]

BLAST of CmoCh14G010580 vs. TAIR 10
Match: AT5G43150.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 54.7 bits (130), Expect = 5.2e-08
Identity = 25/74 (33.78%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 3  FWRQIIFPVRRVWLAVYGRLKARKNDEGLLKLHDDVETCGYQDVKVMWEIL-KQSEAELI 62
          +W  + FP RR+W     R+  R +  GLL+L  DV +C Y+D+ +MW +L K  +   +
Sbjct: 9  WWNTMAFPTRRIWNRFTVRVGFRHS--GLLRLEHDVSSCEYEDIHIMWNLLHKNEDLTRV 68

Query: 63 NHHHQTRRKHKPFW 76
              Q +++ KP W
Sbjct: 69 PIQQQQQQRKKPCW 80

The following BLAST results are available for this feature:

BLAST of CmoCh14G010580 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G010580 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F2W0	1.5e-55	100.00	uncharacterized protein LOC111441680 OS=Cucurbita moschata OX=3662 GN=LOC1114416...	[more]
A0A6J1J0R9	1.1e-50	92.31	uncharacterized protein LOC111482415 OS=Cucurbita maxima OX=3661 GN=LOC111482415...	[more]
A0A0A0LD54	4.7e-41	79.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710210 PE=4 SV=1	[more]
A0A2P6RV40	3.6e-25	65.17	Uncharacterized protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr2g0131671 PE=4...	[more]
A0A6P5X7I2	4.7e-25	63.33	uncharacterized protein LOC111280444 OS=Durio zibethinus OX=66656 GN=LOC11128044...	[more]

BLAST of CmoCh14G010580 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G43150.1	5.2e-08	33.78	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33181	OS01G0778500 PROTEIN	coord: 3..88
None	No IPR available	PANTHER	PTHR33181:SF19	OSJNBA0041A02.21-LIKE PROTEIN	coord: 3..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G010580.1	CmoCh14G010580.1	mRNA