CmoCh14G009960 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G009960
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Description60S ribosomal protein L44
LocationCmo_Chr14: 5371242 .. 5373725 (-)
RNA-Seq ExpressionCmoCh14G009960
SyntenyCmoCh14G009960
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCTCGTTTCGCCTTCGGTTCCTATTTGCCATTAATTAGGGTTTTCGAGCAGGCCTCGTCGACGTCCAGCCGTCATGGTACTCTTCTTCACCTTTGTTTTTCAGTACAATTTTTTTAGCTACTCGTGTATTATCTTGAATTTCTCTGGTTGGTTCTGTACTTCTATTGATTTCCTCTGTGTTCTACATCTCTGATGCCTTGTTCGATTCTGTTTTATTTGGCCGTCAAAGAACTCTGTGATTGAAAAAAAATAATAAGTTGTAGCGATTGGTTGCTTTTTGAAAGTTTAGCTTTGAATGGAGGGGGTGTCACTTAACTTTTGAGGGCGTTGGTATTGAGTGAGATTGGAATGTTTCTTCCTAAATTGCTTAAACGAAGGGATTTTTCAGAAAGGTGAACATTGCACTTGGAGTGAATTATCGATTCTGGATCTTTCATTATAAGATGATCATTGATAATCCCTTCCAAATGAATTTTAAATCACGGAATTGAAATGCAGTGGTGGGTTTGCAGTATTTGTTTCTTTTTTTAACTTTTCAGCTTGTAGCGTCGTAAGTTAAGATTCGATTATGGATATTGTAATGGGAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTCACACAATATAAGAAGGGGAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGATACGATCGCAAACAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGTTGGTTAATTTTCTCACGTCTAGTTAAATTCTTACTTTCTCTTTTTCCGCAATGCCATTGAGATTAGAACTGAAGTGAAATTTATGAATATAAAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGTTGCAAACACGTATCCCAGCACGCTATCAAGGTTAGAATGCGAAGTATTTCATCATTTTTTGTTTATGGCCTCTCTCTATTGAGTATCTTATTAATCTAATGCATTTTCTAAAAAAAAAAACATTCAAGCATATAGTGGTTAGCATCATAAGAGGGGGGATACATGGTTTTTGTTTGCCTCTGTCCTCTCTTTATTAAGTAGTTGTAGGATGTCTTCTAGGAGATTTCACATCGGTTGGAGTGGAGAACGAAGCATCTTTATAAGGGGGTGGAAACCTCTCTCTAGTAGATGCGTTTAAAACCTTGAGGGGAAGCTGGGTAAAATCCAAAGAGAACAATATTTGCTAGTGGTGGGGCTTAGACGGTTACATCTTCTCTTGGTCCCAAATAGCCCATTCATTCCCATTAAGTAAATATGCTTATGAGGCCGTTGATTCTAGGCTTCTGAATATCCCTTTACCCTGGTGGTTGATTTGTTTTCTCCATTCCCGTACTCATCATTCCCTCAAAATTAATTGGGTACTGGGTGCTTCAATTTTTATATGATCGTCAAGAACTATGTTTGAAGTAATTGTTTGCTATTTTAGAAAATATGTAACCCCAAGTAAGGAAACCCTAATTGTTAGTTGTTATCAGAATTTTGTGCCTTTCCCTCATCACAGTTCTAAATTGTCAAATGCAGAGATGCAAGCACTTCGAAATCGGTGGAGACAAGAAGGGGAAGGGAACTTCTCTTTTCTAGACCCTTTATCAGATTTTATCTTTTGTCATTTCTTTTTCGTAAGATCAGTTATGGAGATTTTGCAGCATTACTCTGTTTTGTTAATGAATTAGCTCTACATGTCCTAACGATACTATTTAGCTGAAACTTTCTCATATTTATTGTTGAATTTTCAAAGTTCTGATGCTCTTCGTATGATGTGTTCAGAGTCGTTTCTCATAGAAACTTGGTTTGCATATTCACATGATGAATCGGTCCTTTCCAAATTATTTTTTTTCAGTACAACAAAGTTGGGGTGTATTCTTTTTAATGTATAGTTGTCAGATATGCTTTTGTTTTTTAAATTTATGCGTTTTTTCACTTCATTTTCATATCATAGTTACCATCTGGGATTGAATGCTCTAAGAATTACTTCAACAATCAAATGTATTTGTCTTTTGAGTATAATAAAAATGTTCCCAAATTGGTTTGAATGCGCACGAAAAAGTTCCCAAATTGGTTTAAATTTATGCGTTTTGCGCATGAATTTGTGTATTGAGTGCATAAGTTGTTTAGTTTATACGGTTGCTATTTTGTTGCTATATTTTCTTCGTTGTACTGTACAAATCTATATTCCAATCAAAATTTTAACCTAGAGCCCTGCTTCCTATATATATATATATATATTTTTTTTTTTTGTCTTTGATTTTTAAATTCACACAAGCTTCAATCCTGAATGTACCAAATTTTATTGATTTGAGATTAACTCTAGATGCCATAACTTGATTTGAGATCAAGTTTTCTTAAGATGATGGTAGAATTTTATTTTTGCTTACAATTAGTCAAGCCAAGTCGATAAAGGATTGA

mRNA sequence

ATGGCTCTCGTTTCGCCTTCGCGTCGTAAGTTAAGATTCGATTATGGATATTGTAATGGGAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTCACACAATATAAGAAGGGGAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGATACGATCGCAAACAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGTTACCATCTGGGATTGAATGCTCTAAGAATTACTTCAACAATCAAATTCAAGCCAAGTCGATAAAGGATTGA

Coding sequence (CDS)

ATGGCTCTCGTTTCGCCTTCGCGTCGTAAGTTAAGATTCGATTATGGATATTGTAATGGGAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAAGAAGCACACCTTGCACAAGGTCACACAATATAAGAAGGGGAAGGATAGTCTTGCTGCACAGGGAAAGCGTCGATACGATCGCAAACAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGTTACCATCTGGGATTGAATGCTCTAAGAATTACTTCAACAATCAAATTCAAGCCAAGTCGATAAAGGATTGA

Protein sequence

MALVSPSRRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKLPSGIECSKNYFNNQIQAKSIKD
Homology
[Close]
BLAST of CmoCh14G009960 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 122.9 bits (307), Expect = 2.2e-27
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 0 

Query: 23 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 82
          VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

[Close]
BLAST of CmoCh14G009960 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-26
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 23 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 82
          VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

[Close]
BLAST of CmoCh14G009960 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 114.8 bits (286), Expect = 6.0e-25
Identity = 59/88 (67.05%), Postives = 66/88 (75.00%), Query Frame = 0 

Query: 23  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 82
           VNVPKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 83  LPS------GIECSKNYFNNQIQAKSIK 105
             +       +ECS   +  Q+  K  K
Sbjct: 62  AKTTKKVVLRLECSVCKYKMQMTLKRCK 89

[Close]
BLAST of CmoCh14G009960 vs. ExPASy Swiss-Prot
Match: A8PCG3 (60S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC MYA-4618 / FGSC 9003) OX=240176 GN=RPL44 PE=3 SV=2)

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-25
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 0 

Query: 23  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 82
           VN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 83  LPS------GIECSKNYFNNQIQAKSIK 105
             +       +EC+   +  Q+  K  K
Sbjct: 62  AKTTKKVVLRLECTVCKYKMQVSLKRCK 89

[Close]
BLAST of CmoCh14G009960 vs. ExPASy Swiss-Prot
Match: Q9UWE4 (60S ribosomal protein L44 OS=Coprinopsis cinerea OX=5346 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 114.4 bits (285), Expect = 7.9e-25
Identity = 57/88 (64.77%), Postives = 66/88 (75.00%), Query Frame = 0 

Query: 23  VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 82
           VN+PKT++TYCK K CKKHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2   VNIPKTRRTYCKGKTCKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHKK 61

Query: 83  LPS------GIECSKNYFNNQIQAKSIK 105
             +       +EC+   +  Q+  K  K
Sbjct: 62  AKTTKKVVLRLECTVCKYKMQVSLKRCK 89

[Close]
BLAST of CmoCh14G009960 vs. ExPASy TrEMBL
Match: Q94ER6 (60S ribosomal protein L144 (Fragment) OS=Brassica rapa subsp. pekinensis OX=51351 PE=2 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.7e-27
Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 8  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRK 67
          RR  RF   +   K VN+PKTKKTYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRK
Sbjct: 1  RRHTRFTGDFRGAKMVNIPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRK 60

Query: 68 QSGYGGQTKPVFHKK 83
          QSGYGGQTKPVFHKK
Sbjct: 61 QSGYGGQTKPVFHKK 75

[Close]
BLAST of CmoCh14G009960 vs. ExPASy TrEMBL
Match: A0A3P6B6W2 (Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA07T28699Z PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.7e-27
Identity = 63/75 (84.00%), Postives = 66/75 (88.00%), Query Frame = 0 

Query: 8  RRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRK 67
          RR  RF   +   K VN+PKTKKTYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRK
Sbjct: 19 RRHTRFTGDFRGAKMVNIPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRK 78

Query: 68 QSGYGGQTKPVFHKK 83
          QSGYGGQTKPVFHKK
Sbjct: 79 QSGYGGQTKPVFHKK 93

[Close]
BLAST of CmoCh14G009960 vs. ExPASy TrEMBL
Match: A0A4D9A0S7 (Large subunit ribosomal protein L44e OS=Salvia splendens OX=180675 GN=RP-L44e PE=3 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 6.7e-27
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 0 

Query: 7   SRRKLRFDYGYCNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDR 66
           ++  + F +  C   +VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDR
Sbjct: 208 NQSNMSFAFAVCEHVEVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDR 267

Query: 67  KQSGYGGQTKPVFHKK 83
           KQSGYGGQTKPVFHKK
Sbjct: 268 KQSGYGGQTKPVFHKK 283

[Close]
BLAST of CmoCh14G009960 vs. ExPASy TrEMBL
Match: F6HF50 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g02090 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.9e-26
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 0 

Query: 18 CNGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 77
          C+  QVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 16 CHNSQVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 75

Query: 78 VFHKK 83
          VFHKK
Sbjct: 76 VFHKK 80

[Close]
BLAST of CmoCh14G009960 vs. ExPASy TrEMBL
Match: A0A218XDP5 (Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr029180 PE=3 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.3e-26
Identity = 61/64 (95.31%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 19 NGKQVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPV 78
          NG QVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLA QGKRRYDRKQSGYGGQTKPV
Sbjct: 36 NGMQVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAVQGKRRYDRKQSGYGGQTKPV 95

Query: 79 FHKK 83
          FHKK
Sbjct: 96 FHKK 99

[Close]
BLAST of CmoCh14G009960 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 120.6 bits (301), Expect = 7.8e-28
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 23 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 82
          VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

[Close]
BLAST of CmoCh14G009960 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 120.6 bits (301), Expect = 7.8e-28
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 23 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 82
          VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

[Close]
BLAST of CmoCh14G009960 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 120.6 bits (301), Expect = 7.8e-28
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 0 

Query: 23 VNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 82
          VN+PKTK TYCK+KECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK
Sbjct: 2  VNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKK 61

The following BLAST results are available for this feature:
BLAST of CmoCh14G009960 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q964992.2e-2798.3360S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3[more]
O232901.1e-2695.0060S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3[more]
O598706.0e-2567.0560S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3[more]
A8PCG37.9e-2564.7760S ribosomal protein L44 OS=Coprinopsis cinerea (strain Okayama-7 / 130 / ATCC ... [more]
Q9UWE47.9e-2564.7760S ribosomal protein L44 OS=Coprinopsis cinerea OX=5346 GN=RPL44 PE=3 SV=3[more]
BLAST of CmoCh14G009960 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Q94ER66.7e-2784.0060S ribosomal protein L144 (Fragment) OS=Brassica rapa subsp. pekinensis OX=5135... [more]
A0A3P6B6W26.7e-2784.00Uncharacterized protein OS=Brassica campestris OX=3711 GN=BRAA07T28699Z PE=3 SV=... [more]
A0A4D9A0S76.7e-2781.58Large subunit ribosomal protein L44e OS=Salvia splendens OX=180675 GN=RP-L44e PE... [more]
F6HF501.9e-2693.85Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_01s0011g02090 PE=3 SV=... [more]
A0A218XDP53.3e-2695.31Uncharacterized protein OS=Punica granatum OX=22663 GN=CDL15_Pgr029180 PE=3 SV=1[more]
BLAST of CmoCh14G009960 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G23390.17.8e-2895.00Zinc-binding ribosomal protein family protein [more]
AT4G14320.17.8e-2895.00Zinc-binding ribosomal protein family protein [more]
AT4G14320.27.8e-2895.00Zinc-binding ribosomal protein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000552Ribosomal protein L44ePFAMPF00935Ribosomal_L44coord: 40..82
e-value: 1.4E-18
score: 67.1
IPR000552Ribosomal protein L44ePANTHERPTHR1036960S RIBOSOMAL PROTEIN L36A/L44coord: 13..83
NoneNo IPR availableGENE3D3.10.450.80coord: 22..104
e-value: 2.8E-29
score: 103.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..79
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 49..69
NoneNo IPR availablePANTHERPTHR10369:SF3960S RIBOSOMAL PROTEIN L44coord: 13..83
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 23..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G009960.1CmoCh14G009960.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome