CmoCh14G009850 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G009850
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1
Location	Cmo_Chr14: 5274792 .. 5277350 (-)
RNA-Seq Expression	CmoCh14G009850
Synteny	CmoCh14G009850

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATAGCTAAACTCAGATCAAAATGAAGACATTTCCAAGAAGGAATTGGGGCCTTATATTTTGAGCAGATAAGGTTCCAATTCCAACTTCCTGCTTTCTCCACGCATTATCGTCTCTTACAGAGAAATGGCAGAAGCTGGGCACCTTGTAGCAGCTGCAAATGTCAACTCCATTTCAAGTTCATTCAATAAGGCTGCTGCATCCAAATTTGCAACTCAAGCATTCAAAATCAAAGCTTCTTCAAAGAGAAATGATATCTCCTTGGTAAGCAGATTCTCCTTTTCATCTTTCAGATTTCTGCAGATATCCATTTTCGAACACTCTTGGAGTGATCTATTAGTGTCTCTAGAAAGTATATTTCTTCATACAGTTCCTTTCCATCTCAAGACTTTTTGTTTTAATGAAGAGAAGAAGCAGCAAACCTCCACGGCGTCTGATCACAATATCAACAGCAGGAAGCATGTGGCAGGGGAGATGGAGCTGTGATTACCTGCTTTCCCTGCAAGACTTCAACTTAGAAGACTTGGTAGAAGATGAACACAAAAACGCACACGTCTTCATCAATCTCTGTATTGAGAAGGTAATTCCATTACTTATTCTCCAAAAATCTATTTCAAGTTGTTTATAACAAAATTTAGTGAACCTATGTCTGGTTGATAGTTTTCTAAAAGAGAATTATTCTTTATCTTCTGCTTGATGAACACAAACTTGAATCTTTCAACACCAATAGCAACTATATTGCACCCATCTCCAATAACATCTCAGAGTGAACTATTGTTGGAGAGGGGAAGGGACTTGTTTAGAAAGAGATTGAGACTTGAGTGTGTTGGAGAGAGAAAAAAGGACTTTTCTATACAAAGTAATGTATGTGGTAATAGAGCAGAACGAAACATTCTTTGTAAGGGTGTGGAAACCTCTCCCTAACCGACACGGTTTCAAAACCTTGAGGGAAATTTGAAAGCCCAAAGAGAACAATATTTGCTAGCGGTGGGCTTGAGCTGTTATAAATGGTATCAGAGTTAGACAATAGAGGATGTGCCAGCGAAGAGGCTGAGCCCTAAAAGAGGGTAGACACAAGGCGATGTGCCAGTAAGGACGTTAGACCCCGAAGGGGATGAATTGAGAGGTCCCACATCAATTGGAGAAGGGAACAAATGCCAACGACAATGCTGAGCCCCAAAGGGGTAGATAGGTAGGGGATCTCACAACGATTGGGGAGGATAACGAAATACTTTTTCTAAAGATGTGAAAACCTCTCTCTAGCCATCGCGTTTTAAGAATTTTGAGAGGAAGTCCGAAAAGGAAAGCCCAAAGAGGACAATATTTGTTAAAAAGAGTTTTTCTTTTTTTCTTTTTTCTTTCATTATTATTGTTTTATATTTTTGTTTTTAAAGATGTACATGCTGAAGAATCCATTAATCAGCTCAAAGAGAATGGAGATTGAACAATACTTTTTGATTCAATTTATGAAATCCAAACAGCCAAAATGAGAAAATCCTACACAAAATGCTCTATCAGATTACTAGAATACTAACATTCCATTTATTTACCAGCACGCAAGTTTCGGGTTTACCGTGGATGGAAAGATCAACACATCCTTCATTCGAAAGTGCTGTACCTGTTCTTCACCATACTGCAGAGAGGTAGCTCTGTTAAAACAATCAAACAAATGATAATATCACATAACGTATAGTTCTACTTCCACAACTTTCTTTAATATGCAATTTGCAGACAATGATGGCAGCTATTAGATTAAAAAGTATAGTAACCTTCACAATTTCCTTGTCATCTCTATCTCATCTATTCATGAGGGTTCAATTCAGCAGCATCCCAACCGAGGTTCTAACACCTACAATCATTTTAATCCAACAGATCAATGCAAATTTTAATGTACTTGTTCTGTCATCAAACAGAGCCAAACGGGAGACTACTCTTCCAGACATTGGAGGCGATGATCCATCGGTAAGTTTCTGAAGTTTTTGCATTTCTTCACTTCAATCTCTAAGAGCTTTGGCACCCTGCTTAAAATTTAACAGGTGATCTACGTTAAACCCGGACTTGAGGCTGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACAAAGGTAAGAGTTGAATGCAAATACGACTAGTTATCAATGACAATGACCATATCTAAATAGTACAAGAATCAATCGGAAGAACTTAACAATATAGGCATTTTACAGGACACTTGCTCAGAGTTGTGTGAGAAATCTCAACCCTCAGTGCAATGTAAGTGGTCTTCATGTCATTCAAGCTTTCACACGCAATCAAAAGACTAACAGAGAACTGTTAATTGCAGATATTGGAGCACAGAATGCTGCGTCTATAGACAAGAGGTGGTCTAGGCTTCTGGAGCTTAGAAAATCTCATTCATAGATAACAAACAATATATAATACATATTTTGATGGTTGTTCACAAGGCCTTTATAACATGATTGCCCATTGGTAAAATTAAATTATTTATCATGGTTTCTAAGCCAATATCATCATAAAAGTGGTTGGCCTCTTATTGAATAGAAGTGGA

mRNA sequence

AATAGCTAAACTCAGATCAAAATGAAGACATTTCCAAGAAGGAATTGGGGCCTTATATTTTGAGCAGATAAGGTTCCAATTCCAACTTCCTGCTTTCTCCACGCATTATCGTCTCTTACAGAGAAATGGCAGAAGCTGGGCACCTTGTAGCAGCTGCAAATGTCAACTCCATTTCAAGTTCATTCAATAAGGCTGCTGCATCCAAATTTGCAACTCAAGCATTCAAAATCAAAGCTTCTTCAAAGAGAAATGATATCTCCTTGAGAAGAAGCAGCAAACCTCCACGGCGTCTGATCACAATATCAACAGCAGGAAGCATGTGGCAGGGGAGATGGAGCTGTGATTACCTGCTTTCCCTGCAAGACTTCAACTTAGAAGACTTGGTAGAAGATGAACACAAAAACGCACACGTCTTCATCAATCTCTGTATTGAGAAGCACGCAAGTTTCGGGTTTACCGTGGATGGAAAGATCAACACATCCTTCATTCGAAAGTGCTGTACCTGTTCTTCACCATACTGCAGAGAGACAATGATGGCAGCTATTAGATTAAAAAGTATAGTAACCTTCACAATTTCCTTGTCATCTCTATCTCATCTATTCATGAGGGTTCAATTCAGCAGCATCCCAACCGAGGTTCTAACACCTACAATCATTTTAATCCAACAGATCAATGCAAATTTTAATGTACTTGTTCTGTCATCAAACAGAGCCAAACGGGAGACTACTCTTCCAGACATTGGAGGCGATGATCCATCGGTGATCTACGTTAAACCCGGACTTGAGGCTGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACAAAGGACACTTGCTCAGAGTTGTGTGAGAAATCTCAACCCTCAGTGCAATATATTGGAGCACAGAATGCTGCGTCTATAGACAAGAGGTGGTCTAGGCTTCTGGAGCTTAGAAAATCTCATTCATAGATAACAAACAATATATAATACATATTTTGATGGTTGTTCACAAGGCCTTTATAACATGATTGCCCATTGGTAAAATTAAATTATTTATCATGGTTTCTAAGCCAATATCATCATAAAAGTGGTTGGCCTCTTATTGAATAGAAGTGGA

Coding sequence (CDS)

ATGGCAGAAGCTGGGCACCTTGTAGCAGCTGCAAATGTCAACTCCATTTCAAGTTCATTCAATAAGGCTGCTGCATCCAAATTTGCAACTCAAGCATTCAAAATCAAAGCTTCTTCAAAGAGAAATGATATCTCCTTGAGAAGAAGCAGCAAACCTCCACGGCGTCTGATCACAATATCAACAGCAGGAAGCATGTGGCAGGGGAGATGGAGCTGTGATTACCTGCTTTCCCTGCAAGACTTCAACTTAGAAGACTTGGTAGAAGATGAACACAAAAACGCACACGTCTTCATCAATCTCTGTATTGAGAAGCACGCAAGTTTCGGGTTTACCGTGGATGGAAAGATCAACACATCCTTCATTCGAAAGTGCTGTACCTGTTCTTCACCATACTGCAGAGAGACAATGATGGCAGCTATTAGATTAAAAAGTATAGTAACCTTCACAATTTCCTTGTCATCTCTATCTCATCTATTCATGAGGGTTCAATTCAGCAGCATCCCAACCGAGGTTCTAACACCTACAATCATTTTAATCCAACAGATCAATGCAAATTTTAATGTACTTGTTCTGTCATCAAACAGAGCCAAACGGGAGACTACTCTTCCAGACATTGGAGGCGATGATCCATCGGTGATCTACGTTAAACCCGGACTTGAGGCTGATCTAGATTCATTGGTACGTGACACAATTAGGCTTACCACCTCAACAAAGGACACTTGCTCAGAGTTGTGTGAGAAATCTCAACCCTCAGTGCAATATATTGGAGCACAGAATGCTGCGTCTATAGACAAGAGGTGGTCTAGGCTTCTGGAGCTTAGAAAATCTCATTCATAG

Protein sequence

MAEAGHLVAAANVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITISTAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSFIRKCCTCSSPYCRETMMAAIRLKSIVTFTISLSSLSHLFMRVQFSSIPTEVLTPTIILIQQINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS

Homology

[Close]

BLAST of CmoCh14G009850 vs. ExPASy Swiss-Prot
Match: Q9C5M1 (Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At3g19800 PE=2 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 7.1e-49
Identity = 104/227 (45.81%), Postives = 134/227 (59.03%), Query Frame = 0


Query: 49  SSKPPRRLITISTAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASF 108
           SSK  +RLIT+S +   W G W   Y +SL+D  L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 109 GFTVDGKINTSFIRKCCTCSSPYCRETMMAAIRLKSIVTFTISLSSLSHLFMRVQFSSIP 168
           G +VDG+I TS  RKC  CSS Y R                                   
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPR----------------------------------- 168

Query: 169 TEVLTPTIILIQQINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVR 228
                        I+ +F V +L S+R  R +TLP+IGGDDPSVIYV+PG EA+LDSLV+
Sbjct: 169 ------------LIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYVRPGYEANLDSLVQ 228

Query: 229 DTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRK 276
           DTIRLTT  KD CS+ CEKS+P++ Y+G  N AS+DKRWSRLLEL+K
Sbjct: 229 DTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of CmoCh14G009850 vs. ExPASy TrEMBL
Match: A0A6J1F3N3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111441878 PE=4 SV=1)

HSP 1 Score: 537.0 bits (1382), Expect = 4.8e-149
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 0


Query: 1   MAEAGHLVAAANVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITIS 60
           MAEAGHLVAAANVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITIS
Sbjct: 1   MAEAGHLVAAANVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITIS 60

Query: 61  TAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF 120
           TAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF
Sbjct: 61  TAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF 120

Query: 121 IRKCCTCSSPYCRETMMAAIRLKSIVTFTISLSSLSHLFMRVQFSSIPTEVLTPTIILIQ 180
           IRKCCTCSSPYCRETMMAAIRLKSIVTFTISLSSLSHLFMRVQFSSIPTEVLTPTIILIQ
Sbjct: 121 IRKCCTCSSPYCRETMMAAIRLKSIVTFTISLSSLSHLFMRVQFSSIPTEVLTPTIILIQ 180

Query: 181 QINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT 240
           QINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT
Sbjct: 181 QINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT 240

Query: 241 CSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS 279
           CSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS
Sbjct: 241 CSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS 278

[Close]

BLAST of CmoCh14G009850 vs. ExPASy TrEMBL
Match: A0A6J1J7A5 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1)

HSP 1 Score: 521.2 bits (1341), Expect = 2.7e-144
Identity = 269/278 (96.76%), Postives = 271/278 (97.48%), Query Frame = 0


Query: 1   MAEAGHLVAAANVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITIS 60
           MAEAGHLVAA NVNSISSSFNK AA KFATQ FKIKASSKRNDISLRRSSKPPRRLITIS
Sbjct: 1   MAEAGHLVAAGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPPRRLITIS 60

Query: 61  TAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF 120
           TAGSMWQG+WSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF
Sbjct: 61  TAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF 120

Query: 121 IRKCCTCSSPYCRETMMAAIRLKSIVTFTISLSSLSHLFMRVQFSSIPTEVLTPTIILIQ 180
            RKCCTCSSPYCRETMMAAIRLKSIV FTISLSSLSHLFMRVQFSSIPTEVLTP IILIQ
Sbjct: 121 TRKCCTCSSPYCRETMMAAIRLKSIVIFTISLSSLSHLFMRVQFSSIPTEVLTPKIILIQ 180

Query: 181 QINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT 240
           QINANFNVLVLSSNRAKRETTLP+IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT
Sbjct: 181 QINANFNVLVLSSNRAKRETTLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT 240

Query: 241 CSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS 279
           CSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS
Sbjct: 241 CSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS 278

[Close]

BLAST of CmoCh14G009850 vs. ExPASy TrEMBL
Match: A0A6J1IYU4 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 4.5e-139
Identity = 268/303 (88.45%), Postives = 270/303 (89.11%), Query Frame = 0


Query: 1   MAEAGHLVAAANVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITIS 60
           MAEAGHLVAA NVNSISSSFNK AA KFATQ FKIKASSKRNDISLRRSSKPPRRLITIS
Sbjct: 1   MAEAGHLVAAGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPPRRLITIS 60

Query: 61  TAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF 120
           TAGSMWQG+WSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF
Sbjct: 61  TAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF 120

Query: 121 IRKCCTCSSPYCRETMMAAIRLKSIVTFTISLSSLSHLFMRVQFSSIPTEVLTPTIILIQ 180
            RKCCTCSSPYCRETMMAAIRLKSIV FTISLSSLSHLFMRVQFSSIPTEVLTP IILIQ
Sbjct: 121 TRKCCTCSSPYCRETMMAAIRLKSIVIFTISLSSLSHLFMRVQFSSIPTEVLTPKIILIQ 180

Query: 181 QINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT 240
           QINANFNVLVLSSNRAKRETTLP+IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT
Sbjct: 181 QINANFNVLVLSSNRAKRETTLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT 240

Query: 241 CSELCEKSQPSVQY-------------------------IGAQNAASIDKRWSRLLELRK 279
           CSELCEKSQPSVQ                          IGAQNAASIDKRWSRLLELRK
Sbjct: 241 CSELCEKSQPSVQCKWSSCHSSFHTQSEVGTNREMLIADIGAQNAASIDKRWSRLLELRK 300

[Close]

BLAST of CmoCh14G009850 vs. ExPASy TrEMBL
Match: A0A6J1F8T8 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111441878 PE=4 SV=1)

HSP 1 Score: 434.9 bits (1117), Expect = 2.6e-118
Identity = 231/278 (83.09%), Postives = 231/278 (83.09%), Query Frame = 0


Query: 1   MAEAGHLVAAANVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITIS 60
           MAEAGHLVAAANVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITIS
Sbjct: 1   MAEAGHLVAAANVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITIS 60

Query: 61  TAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF 120
           TAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF
Sbjct: 61  TAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF 120

Query: 121 IRKCCTCSSPYCRETMMAAIRLKSIVTFTISLSSLSHLFMRVQFSSIPTEVLTPTIILIQ 180
           IRKCCTCSSPYCRE                                              
Sbjct: 121 IRKCCTCSSPYCRE---------------------------------------------- 180

Query: 181 QINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT 240
            INANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT
Sbjct: 181 -INANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT 231

Query: 241 CSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS 279
           CSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS
Sbjct: 241 CSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS 231

[Close]

BLAST of CmoCh14G009850 vs. ExPASy TrEMBL
Match: A0A6J1J5E3 (large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic isoform X4 OS=Cucurbita maxima OX=3661 GN=LOC111481900 PE=4 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.9e-115
Identity = 224/278 (80.58%), Postives = 226/278 (81.29%), Query Frame = 0


Query: 1   MAEAGHLVAAANVNSISSSFNKAAASKFATQAFKIKASSKRNDISLRRSSKPPRRLITIS 60
           MAEAGHLVAA NVNSISSSFNK AA KFATQ FKIKASSKRNDISLRRSSKPPRRLITIS
Sbjct: 1   MAEAGHLVAAGNVNSISSSFNKTAAPKFATQTFKIKASSKRNDISLRRSSKPPRRLITIS 60

Query: 61  TAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF 120
           TAGSMWQG+WSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF
Sbjct: 61  TAGSMWQGKWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASFGFTVDGKINTSF 120

Query: 121 IRKCCTCSSPYCRETMMAAIRLKSIVTFTISLSSLSHLFMRVQFSSIPTEVLTPTIILIQ 180
            RKCCTCSSPYCRE                                              
Sbjct: 121 TRKCCTCSSPYCRE---------------------------------------------- 180

Query: 181 QINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT 240
            INANFNVLVLSSNRAKRETTLP+IGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT
Sbjct: 181 -INANFNVLVLSSNRAKRETTLPEIGGDDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDT 231

Query: 241 CSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS 279
           CSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS
Sbjct: 241 CSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRKSHS 231

[Close]

BLAST of CmoCh14G009850 vs. TAIR 10
Match: AT3G19800.1 (Protein of unknown function (DUF177) )

HSP 1 Score: 195.7 bits (496), Expect = 5.0e-50
Identity = 104/227 (45.81%), Postives = 134/227 (59.03%), Query Frame = 0


Query: 49  SSKPPRRLITISTAGSMWQGRWSCDYLLSLQDFNLEDLVEDEHKNAHVFINLCIEKHASF 108
           SSK  +RLIT+S +   W G W   Y +SL+D  L+DLVED   N+ V ++L +++HAS 
Sbjct: 49  SSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLVEDGPPNSRVSVDLSVQRHASM 108

Query: 109 GFTVDGKINTSFIRKCCTCSSPYCRETMMAAIRLKSIVTFTISLSSLSHLFMRVQFSSIP 168
           G +VDG+I TS  RKC  CSS Y R                                   
Sbjct: 109 GLSVDGRIMTSIARKCSICSSLYPR----------------------------------- 168

Query: 169 TEVLTPTIILIQQINANFNVLVLSSNRAKRETTLPDIGGDDPSVIYVKPGLEADLDSLVR 228
                        I+ +F V +L S+R  R +TLP+IGGDDPSVIYV+PG EA+LDSLV+
Sbjct: 169 ------------LIDTSFTVWILPSSRENRASTLPEIGGDDPSVIYVRPGYEANLDSLVQ 228

Query: 229 DTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRWSRLLELRK 276
           DTIRLTT  KD CS+ CEKS+P++ Y+G  N AS+DKRWSRLLEL+K
Sbjct: 229 DTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRWSRLLELKK 228

[Close]

BLAST of CmoCh14G009850 vs. TAIR 10
Match: AT3G19800.2 (Protein of unknown function (DUF177) )

HSP 1 Score: 194.1 bits (492), Expect = 1.5e-49
Identity = 110/248 (44.35%), Postives = 145/248 (58.47%), Query Frame = 0


Query: 28  FATQAFKIKASSKRNDISLRRSSKPPRRLITISTAGSMWQGRWSCDYLLSLQDFNLEDLV 87
           F++ + K +ASS    I+   SSK  +RLIT+S +   W G W   Y +SL+D  L+DLV
Sbjct: 27  FSSLSKKHQASSAA--INGGGSSKTVKRLITLSPSEGKWNGNWKTQYDVSLRDLQLQDLV 86

Query: 88  EDEHKNAHVFINLCIEKHASFGFTVDGKINTSFIRKCCTCSSPYCRETMMAAIRLKSIVT 147
           ED   N+ V ++L +++HAS G +VDG+I TS  RKC  CSS Y R              
Sbjct: 87  EDGPPNSRVSVDLSVQRHASMGLSVDGRIMTSIARKCSICSSLYPR-------------- 146

Query: 148 FTISLSSLSHLFMRVQFSSIPTEVLTPTIILIQQINANFNVLVLSSNRAKRETTLPDIGG 207
                                             I+ +F V +L S+R  R +TLP+IGG
Sbjct: 147 ---------------------------------LIDTSFTVWILPSSRENRASTLPEIGG 206

Query: 208 DDPSVIYVKPGLEADLDSLVRDTIRLTTSTKDTCSELCEKSQPSVQYIGAQNAASIDKRW 267
           DDPSVIYV+PG EA+LDSLV+DTIRLTT  KD CS+ CEKS+P++ Y+G  N AS+DKRW
Sbjct: 207 DDPSVIYVRPGYEANLDSLVQDTIRLTTYAKDICSDSCEKSEPTLHYVGQTNTASVDKRW 225

Query: 268 SRLLELRK 276
           SRLLEL+K
Sbjct: 267 SRLLELKK 225

The following BLAST results are available for this feature:

BLAST of CmoCh14G009850 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C5M1	7.1e-49	45.81	Large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic O...	[more]

BLAST of CmoCh14G009850 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F3N3	4.8e-149	100.00	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A6J1J7A5	2.7e-144	96.76	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A6J1IYU4	4.5e-139	88.45	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A6J1F8T8	2.6e-118	83.09	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]
A0A6J1J5E3	5.9e-115	80.58	large ribosomal RNA subunit accumulation protein YCED homolog 2, chloroplastic i...	[more]

BLAST of CmoCh14G009850 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G19800.1	5.0e-50	45.81	Protein of unknown function (DUF177)	[more]
AT3G19800.2	1.5e-49	44.35	Protein of unknown function (DUF177)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044985	Large ribosomal RNA subunit accumulation protein YceD homologue 2, chloroplastic	PANTHER	PTHR37734	LARGE RIBOSOMAL RNA SUBUNIT ACCUMULATION PROTEIN YCED HOMOLOG 2, CHLOROPLASTIC	coord: 1..135 coord: 179..276

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G009850.1	CmoCh14G009850.1	mRNA