CmoCh14G008140 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G008140
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionRibosomal_L2_C domain-containing protein
LocationCmo_Chr14: 4202970 .. 4203933 (+)
RNA-Seq ExpressionCmoCh14G008140
SyntenyCmoCh14G008140
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCTTTACCATATTGTCGGGCGACACTTGTCGAGCGGAGAGAGTATGACAGAGGGGCACAAGGGGGAAGAGCAGAAGCTTTATTAATGCTAGAGAGAGAGAGAGGAGAGAGAAAAATGGTTAGAGAGCCATAAGAGGTCAAGGTTAAGCAGGTAAGGATGCTTCATGTTGTACATGCAGTGAGTGTCCCAGGAACTTTCTTGTCAACATACAAAAGCAAAGACAACACATCATGTTGCCCTTTTAACACATAATTCATTGTCTTTTAAACATCTTTGCCTTCTTATTATACATATATATATATATATATATATATATATATATATATATATATACACACACACACACACCGATCTCAAATCCCGACATTAAGGATTTACATTTCTTAGATAAATTTTAACGGAGTTTATAGATTGGCTCGAGTGGTTGGAGTTACTTTTTCAAAAAATTTGTTTTTAATAAAAATAGAGTGTTACATATAAAACGTCTGAAACATTATATCTTAAAATAAATATAAGCCTATATAATTATATTTTAAGTTAAACAAATATATTTTAAAATTAACCATGAATTTAAATTGGTTTAGTTTAATCGGCTCATAAAATTTTTATTTATTTGAATTTAGCTCAACTGAAATAAGTTGATAACCCAACCTAAATTATAGAGATTGAGTTGAGTTATTAAAATTTTCACTAAGTCATATATACCTTTTTGAAATTATATATCTATATATATATATATATATATATATATCTTTTGAATTGAAAAATTTGGTCACGTAGATCTTCGATTTTGTTGGAATTTGTTGATAGCTCCGTACGAATTTACAATGGAAAAACTTCGGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTTCAACACGAAAATGAAGACTTTCGAGAAGAAATATTGGACCGGGAAGAAAAGGGGAGAAAGTAA

mRNA sequence

ATGGGCCTTTACCATATTGTCGGGCGACACTTGTCGAGCGGAGAGAATCTTCGATTTTGTTGGAATTTGTTGATAGCTCCGTACGAATTTACAATGGAAAAACTTCGGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTTCAACACGAAAATGAAGACTTTCGAGAAGAAATATTGGACCGGGAAGAAAAGGGGAGAAAGTAA

Coding sequence (CDS)

ATGGGCCTTTACCATATTGTCGGGCGACACTTGTCGAGCGGAGAGAATCTTCGATTTTGTTGGAATTTGTTGATAGCTCCGTACGAATTTACAATGGAAAAACTTCGGTTCGTTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTTCAACACGAAAATGAAGACTTTCGAGAAGAAATATTGGACCGGGAAGAAAAGGGGAGAAAGTAA

Protein sequence

MGLYHIVGRHLSSGENLRFCWNLLIAPYEFTMEKLRFVVRSLKEGLVINLESLLQHENEDFREEILDREEKGRK
Homology
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BLAST of CmoCh14G008140 vs. ExPASy TrEMBL
Match: W1NMZ2 (Ribosomal_L2_C domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00001p00272570 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.7e-08
Identity = 36/49 (73.47%), Postives = 41/49 (83.67%), Query Frame = 0 

Query: 22  NLLIAPYEFTMEKLRFVVRSLKEGLVINLESLLQHENEDFREEILDREE 71
           N LI+P+EFTMEK+ FVVR+LKE LVINLESLL H NED RE+ LD EE
Sbjct: 219 NSLISPFEFTMEKVLFVVRALKERLVINLESLLLHGNEDLREKFLDWEE 267

The following BLAST results are available for this feature:
BLAST of CmoCh14G008140 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh14G008140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
W1NMZ21.7e-0873.47Ribosomal_L2_C domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMT... [more]
BLAST of CmoCh14G008140 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G008140.1CmoCh14G008140.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0032543 mitochondrial translation
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003723 RNA binding
molecular_function GO:0003735 structural constituent of ribosome