CmoCh14G007360 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G007360
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionCytochrome b6
LocationCmo_Chr14: 3766124 .. 3767677 (-)
RNA-Seq ExpressionCmoCh14G007360
SyntenyCmoCh14G007360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGTAGCAGACTTCCATGAATGGCTGTAACGAATTGTCAGGATTATGTCTTTACTTTCTGATTAGTCCAATGTGTTTGTTCATGGTTACGGGTTATTTTAGAGTAATAAAGGAACAAGTTTTGGGTTCGTCATCGGGATGAAGATTATATTTACTGCCCTTTCCTTAATGCTGTCAAGCTTTAACGATTGGCAAATTAAAGTAGATACACAGCAAAAGAAGCCTATATATTTTCAGTAGATTTGATTGAAAGTGCAAGCATGCACTCACTACACGACATTTTGAATATCATGTTGCATATCATGTTGTCAAAATTTAACTAATGGACTAAACAGAGGAGAGACCTAGCCTACGAGTTTACGTCCATCCCTTGGTCGGGTACAGTTTTCTTTCTCTTTTTCCAACAATCTCTTCTAATGACAGAATTGATGCCGAACTCTCAAATTCTGCACTTTTCAGCTGAGAAACAGAGACACAAGGATACCAATATGGAGTGTCGTTATCAATTTGCTCATCGTTTCACTCGAAATAGTATAGAAGCTAAACTCGCACATATAAATAAATTTTCTGGTAAAGATGAGTTCAAGCTTTAAAATTCCACCTCAGTCTTCAAGTCTGCATTCAATTTTTTTCTTTTTAGGAGCTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTATCACTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACGTAAGTCCTTTATAGAGAATCGAAATCATAAAGACTACGTTGCAACAAACTTGTAGAAATGAACCATCAGACCGATAAATAGAGCTGAGGTTAGAGTTAAAACTGCTAGTAGAAAACCGAAAAATCGTTATTGTAAAATGAACTCACTTTCCCAGGACAGGATACGCTAAATCCTGCATCTATTGAAGAAACAAAGATACACATAAGCATAAATGTTTTAGATCAATGGGTTATTTTGCTAATGCTCTCTTTGATGACAATTTTGTATTGAATTTTTGGTTTTAATCTTGTTTTCCAAAAGTTGATTACAAATGATCAAAAACAAAGAGTAATGTACTAGAAAAGACTGACCAAAAACATCCAGAATATAAGAACGCATTAAAGCACCAAAGTTCCATCAGAAACCTCCTACTTGATTAACAAATTCTTATGGTCTGTAAAACCCAGAAAGAACCTAAAAAGAGAAGGTTAAGAACACAGCTAGCAGAGTGAAGTTCCCTGCAAAAAGTTTATCCAAGTGAGAAACAAACAAACCCCATTTTGTTTAAGGTAATAACAAGGAACAACAAAACATCCCTCACAGTTTCAGCAATCTTATTGCGCCATATTGAAGTAGAGCAACAAGAAGACTCACCTGTATCATCCCCGACAGACCCACAATCCATTTCTTCCCATCAAAGGAACGGGGAGCTTCGGCCAATGTCGGGAAAATCACCATCGCCATGGCCAAAAGGAGAGGTAGAAATGGCCCAACAATGGCCCTTGCTGTCTTTGAATAAATGA

mRNA sequence

ATGAGTAATAAAGGAACAAGTTTTGGGTTCGTCATCGGGATGAAGATTATATTTACTGCCCTTTCCTTAATGCTGTCAAGCTTTAACGATTGGCAAATTAAAGAGCTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTATCACTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACTTTATCCAAGTGAGAAACAAACAAACCCCATTTTGTTTAAGGTAATAACAAGGAACAACAAAACATCCCTCACAGTTTCAGCAATCTTATTGCGCCATATTGAAGTAGAGCAACAAGAAGACTCACCTGTATCATCCCCGACAGACCCACAATCCATTTCTTCCCATCAAAGGAACGGGGAGCTTCGGCCAATGTCGGGAAAATCACCATCGCCATGGCCAAAAGGAGAGGTAGAAATGGCCCAACAATGGCCCTTGCTGTCTTTGAATAAATGA

Coding sequence (CDS)

ATGAGTAATAAAGGAACAAGTTTTGGGTTCGTCATCGGGATGAAGATTATATTTACTGCCCTTTCCTTAATGCTGTCAAGCTTTAACGATTGGCAAATTAAAGAGCTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTATCACTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACTTTATCCAAGTGAGAAACAAACAAACCCCATTTTGTTTAAGGTAATAACAAGGAACAACAAAACATCCCTCACAGTTTCAGCAATCTTATTGCGCCATATTGAAGTAGAGCAACAAGAAGACTCACCTGTATCATCCCCGACAGACCCACAATCCATTTCTTCCCATCAAAGGAACGGGGAGCTTCGGCCAATGTCGGGAAAATCACCATCGCCATGGCCAAAAGGAGAGGTAGAAATGGCCCAACAATGGCCCTTGCTGTCTTTGAATAAATGA

Protein sequence

MSNKGTSFGFVIGMKIIFTALSLMLSSFNDWQIKELELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMILYPSEKQTNPILFKVITRNNKTSLTVSAILLRHIEVEQQEDSPVSSPTDPQSISSHQRNGELRPMSGKSPSPWPKGEVEMAQQWPLLSLNK
Homology
[Close]
BLAST of CmoCh14G007360 vs. ExPASy Swiss-Prot
Match: A1EA38 (Cytochrome b6 OS=Agrostis stolonifera OX=63632 GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. ExPASy Swiss-Prot
Match: Q70XX8 (Cytochrome b6 OS=Amborella trichopoda OX=13333 GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. ExPASy Swiss-Prot
Match: Q8S8W0 (Cytochrome b6 OS=Atropa belladonna OX=33113 GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. ExPASy Swiss-Prot
Match: Q7YJU8 (Cytochrome b6 OS=Calycanthus floridus var. glaucus OX=212734 GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. ExPASy Swiss-Prot
Match: A0A365 (Cytochrome b6 OS=Coffea arabica OX=13443 GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. ExPASy TrEMBL
Match: A0A1P8LDT3 (Cytochrome b6 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=petB PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.1e-10
Identity = 42/55 (76.36%), Postives = 46/55 (83.64%), Query Frame = 0 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMILYPSEKQTNPILFK 91
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI     KQ   +L++
Sbjct: 113 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI----RKQGISVLYR 163

[Close]
BLAST of CmoCh14G007360 vs. ExPASy TrEMBL
Match: A0A075ECE2 (Cytochrome b6 OS=Populus fremontii OX=295326 GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. ExPASy TrEMBL
Match: A0A346QBD9 (Cytochrome b6 OS=Holboellia latifolia OX=41782 GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. ExPASy TrEMBL
Match: A0A193D4A0 (Cytochrome b6 OS=Arthraxon prionodes OX=1564034 GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 168 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 208

[Close]
BLAST of CmoCh14G007360 vs. ExPASy TrEMBL
Match: A0A3S8DL82 (Cytochrome b6 OS=Andropogon gayanus OX=1092577 GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 4.1e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 0 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 168 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 208

[Close]
BLAST of CmoCh14G007360 vs. TAIR 10
Match: ATCG00720.1 (photosynthetic electron transfer B )

HSP 1 Score: 70.9 bits (172), Expect = 1.1e-12
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 0 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHF MI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMI 206

The following BLAST results are available for this feature:
BLAST of CmoCh14G007360 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
A1EA381.1e-1295.12Cytochrome b6 OS=Agrostis stolonifera OX=63632 GN=petB PE=3 SV=1[more]
Q70XX81.1e-1295.12Cytochrome b6 OS=Amborella trichopoda OX=13333 GN=petB PE=3 SV=1[more]
Q8S8W01.1e-1295.12Cytochrome b6 OS=Atropa belladonna OX=33113 GN=petB PE=3 SV=1[more]
Q7YJU81.1e-1295.12Cytochrome b6 OS=Calycanthus floridus var. glaucus OX=212734 GN=petB PE=3 SV=1[more]
A0A3651.1e-1295.12Cytochrome b6 OS=Coffea arabica OX=13443 GN=petB PE=3 SV=1[more]
BLAST of CmoCh14G007360 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1P8LDT33.1e-1076.36Cytochrome b6 OS=Citrullus lanatus subsp. vulgaris OX=260674 GN=petB PE=4 SV=1[more]
A0A075ECE24.1e-1095.12Cytochrome b6 OS=Populus fremontii OX=295326 GN=petB PE=3 SV=1[more]
A0A346QBD94.1e-1095.12Cytochrome b6 OS=Holboellia latifolia OX=41782 GN=petB PE=3 SV=1[more]
A0A193D4A04.1e-1095.12Cytochrome b6 OS=Arthraxon prionodes OX=1564034 GN=petB PE=3 SV=1[more]
A0A3S8DL824.1e-1095.12Cytochrome b6 OS=Andropogon gayanus OX=1092577 GN=petB PE=3 SV=1[more]
BLAST of CmoCh14G007360 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00720.11.1e-1292.68photosynthetic electron transfer B [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 31..76
e-value: 2.4E-10
score: 40.6
IPR027387Cytochrome b/b6-like domain superfamilyGENE3D1.20.810.10Cytochrome Bc1 Complex; Chain Ccoord: 8..87
e-value: 5.8E-9
score: 37.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 115..167
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 116..140
NoneNo IPR availablePANTHERPTHR19271CYTOCHROME Bcoord: 36..76
IPR023530Cytochrome b6, PetBPANTHERPTHR19271:SF20SUBFAMILY NOT NAMEDcoord: 36..76
IPR016174Di-haem cytochrome, transmembraneSUPERFAMILY81342Transmembrane di-heme cytochromescoord: 25..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G007360.1CmoCh14G007360.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009767 photosynthetic electron transport chain
biological_process GO:0050821 protein stabilization
biological_process GO:0022904 respiratory electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0070469 respirasome
cellular_component GO:0016020 membrane
molecular_function GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0042301 phosphate ion binding
molecular_function GO:0009055 electron transfer activity
molecular_function GO:0016491 oxidoreductase activity