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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGGCTTCTCAGTCTTTTGTTCTTGTTTTTGCTCTGATCTTCGTCGCCGCCGTCGCCGGAGCTTTTGCTGAGGCACCCACCGCCACCCCATCGGAATCCCCCGCGCCGAAATCCGCGCCTTCTGACTCCGAAGCGTCTTCTCCATCTTCATCTCCGGCTTCCTCTCCAGCGGATACTCCAGCGGACACTCCGGCGGATACTCCGGCAGATACTCCGGCAGGTACACCGGCAGATACTCCGGCAGATACACCGGCAGATACTCCAGCGGAAACTCCGGCGGACGCTCCAGCGGCCTCATCTGAGTCGTCTCCATCCCCGTCAGCCTCTGCTCCGACTTCGCCCTCCGAGGCTCCGGCGAGCAACTCGCCCGACAGCTCCCCGGATTCCTCCCCTTCCGTTTCTCCTTCTCCAGCCACCGACTCACCAGCTGCGTCTCCCGCCGACTCCGGCTCCCCCGCTGCCTCGCCTGATTCCGATTCGTCTTCTCCCCCCTCTCCCACCCCCGACGCCGCCGATAGCCCCGTTGCTGATGGCCCTTCGGAGGCTGATGGCCCTTCGGAGGCTGATGGCCCTTCGGAGGCTGATGGCACCATCTCTGATTCTCCGGCTGATTCACCCGACGGTGATGCCGACAGCGGCACTTCTGCTCTGAAACTCACCTCCGCCGCCGTCTGTGGTGCCGTCGCCGTCGCCGGACTCTTTGCATTCTGA mRNA sequence ATGGCTTCTCAGTCTTTTGTTCTTGTTTTTGCTCTGATCTTCGTCGCCGCCGTCGCCGGAGCTTTTGCTGAGGCACCCACCGCCACCCCATCGGAATCCCCCGCGCCGAAATCCGCGCCTTCTGACTCCGAAGCGTCTTCTCCATCTTCATCTCCGGCTTCCTCTCCAGCGGATACTCCAGCGGACACTCCGGCGGATACTCCGGCAGATACTCCGGCAGGTACACCGGCAGATACTCCGGCAGATACACCGGCAGATACTCCAGCGGAAACTCCGGCGGACGCTCCAGCGGCCTCATCTGAGTCGTCTCCATCCCCGTCAGCCTCTGCTCCGACTTCGCCCTCCGAGGCTCCGGCGAGCAACTCGCCCGACAGCTCCCCGGATTCCTCCCCTTCCGTTTCTCCTTCTCCAGCCACCGACTCACCAGCTGCGTCTCCCGCCGACTCCGGCTCCCCCGCTGCCTCGCCTGATTCCGATTCGTCTTCTCCCCCCTCTCCCACCCCCGACGCCGCCGATAGCCCCGTTGCTGATGGCCCTTCGGAGGCTGATGGCCCTTCGGAGGCTGATGGCCCTTCGGAGGCTGATGGCACCATCTCTGATTCTCCGGCTGATTCACCCGACGGTGATGCCGACAGCGGCACTTCTGCTCTGAAACTCACCTCCGCCGCCGTCTGTGGTGCCGTCGCCGTCGCCGGACTCTTTGCATTCTGA Coding sequence (CDS) ATGGCTTCTCAGTCTTTTGTTCTTGTTTTTGCTCTGATCTTCGTCGCCGCCGTCGCCGGAGCTTTTGCTGAGGCACCCACCGCCACCCCATCGGAATCCCCCGCGCCGAAATCCGCGCCTTCTGACTCCGAAGCGTCTTCTCCATCTTCATCTCCGGCTTCCTCTCCAGCGGATACTCCAGCGGACACTCCGGCGGATACTCCGGCAGATACTCCGGCAGGTACACCGGCAGATACTCCGGCAGATACACCGGCAGATACTCCAGCGGAAACTCCGGCGGACGCTCCAGCGGCCTCATCTGAGTCGTCTCCATCCCCGTCAGCCTCTGCTCCGACTTCGCCCTCCGAGGCTCCGGCGAGCAACTCGCCCGACAGCTCCCCGGATTCCTCCCCTTCCGTTTCTCCTTCTCCAGCCACCGACTCACCAGCTGCGTCTCCCGCCGACTCCGGCTCCCCCGCTGCCTCGCCTGATTCCGATTCGTCTTCTCCCCCCTCTCCCACCCCCGACGCCGCCGATAGCCCCGTTGCTGATGGCCCTTCGGAGGCTGATGGCCCTTCGGAGGCTGATGGCCCTTCGGAGGCTGATGGCACCATCTCTGATTCTCCGGCTGATTCACCCGACGGTGATGCCGACAGCGGCACTTCTGCTCTGAAACTCACCTCCGCCGCCGTCTGTGGTGCCGTCGCCGTCGCCGGACTCTTTGCATTCTGA Protein sequence MASQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTPADTPADTPADTPAGTPADTPADTPADTPAETPADAPAASSESSPSPSASAPTSPSEAPASNSPDSSPDSSPSVSPSPATDSPAASPADSGSPAASPDSDSSSPPSPTPDAADSPVADGPSEADGPSEADGPSEADGTISDSPADSPDGDADSGTSALKLTSAAVCGAVAVAGLFAF
Homology
BLAST of CmoCh14G007060 vs. ExPASy Swiss-Prot
Match: O10341 (Uncharacterized 29.3 kDa protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus OX=262177 GN=ORF92 PE=4 SV=1) HSP 1 Score: 47.4 bits (111), Expect = 2.7e-04 Identity = 63/154 (40.91%), Postives = 90/154 (58.44%), Query Frame = 0
Query: 25 APTATPSESPAPKSAPSDSEASSPSSSPASSPADTPADTPADTPADTPAGTPADTPADTP 84
+PT TP+ SP P P+ + +P+ SP +PA +P TP+ T + TP+ TP TP+ TP
Sbjct: 44 SPTPTPTPSPTPTPTPTPTPTPTPTPSPTPTPALSPTPTPSPTLSPTPSPTP--TPSPTP 103
Query: 85 ADTPAETPADAPAASSESSPSPSASAPTSPSEAPASNSPDSSPDSSPSVSPSPA-TDSPA 144
+ TP+ TP +P S +PSP+ S +PS P + SP SP SP+ +PSP + +P
Sbjct: 104 SPTPSPTPTPSPTPSPTPTPSPTPSPTPTPSPTP-TPSPTPSPTPSPTPTPSPTPSPTPT 163
Query: 145 ASPADSGSPAASPDSDSSSPPSPTPDAADSPVAD 178
SP S +P SP + PPSPTP + SP+ D
Sbjct: 164 PSPTPSPTPTPSPTPSPTPPPSPTPPPSPSPLGD 194
BLAST of CmoCh14G007060 vs. ExPASy TrEMBL
Match: A0A6J1F318 (mucin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441724 PE=4 SV=1) HSP 1 Score: 367.5 bits (942), Expect = 4.3e-98 Identity = 236/236 (100.00%), Postives = 236/236 (100.00%), Query Frame = 0
Query: 1 MASQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTP 60
MASQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTP
Sbjct: 1 MASQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTP 60
Query: 61 ADTPADTPADTPAGTPADTPADTPADTPAETPADAPAASSESSPSPSASAPTSPSEAPAS 120
ADTPADTPADTPAGTPADTPADTPADTPAETPADAPAASSESSPSPSASAPTSPSEAPAS
Sbjct: 61 ADTPADTPADTPAGTPADTPADTPADTPAETPADAPAASSESSPSPSASAPTSPSEAPAS 120
Query: 121 NSPDSSPDSSPSVSPSPATDSPAASPADSGSPAASPDSDSSSPPSPTPDAADSPVADGPS 180
NSPDSSPDSSPSVSPSPATDSPAASPADSGSPAASPDSDSSSPPSPTPDAADSPVADGPS
Sbjct: 121 NSPDSSPDSSPSVSPSPATDSPAASPADSGSPAASPDSDSSSPPSPTPDAADSPVADGPS 180
Query: 181 EADGPSEADGPSEADGTISDSPADSPDGDADSGTSALKLTSAAVCGAVAVAGLFAF 237
EADGPSEADGPSEADGTISDSPADSPDGDADSGTSALKLTSAAVCGAVAVAGLFAF
Sbjct: 181 EADGPSEADGPSEADGTISDSPADSPDGDADSGTSALKLTSAAVCGAVAVAGLFAF 236
BLAST of CmoCh14G007060 vs. ExPASy TrEMBL
Match: A0A6J1J779 (mucin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481994 PE=4 SV=1) HSP 1 Score: 296.6 bits (758), Expect = 9.3e-77 Identity = 211/258 (81.78%), Postives = 218/258 (84.50%), Query Frame = 0
Query: 1 MASQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSS--------- 60
MASQS VLVFALIFVAAVAGAFAEAPTA+PSESPAPKSAPSDSEASSPSSS
Sbjct: 1 MASQS-VLVFALIFVAAVAGAFAEAPTASPSESPAPKSAPSDSEASSPSSSPADTPADTP 60
Query: 61 -----------PASSPADTPADTPADTPADTPAGTPADTPADTPADTPAETPADAPAASS 120
PA +PADTPADTPADTPADTPA TPADTPADTPADTPA+TPAD PAASS
Sbjct: 61 ADTPAETPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPADTPAASS 120
Query: 121 ESSPSPSASAPTSPSEAPASNSPDSSPDSSPSVSPSPATDSPAASPADSGSPAASPDSDS 180
ESSPSP+ASAPTSPSEAPASNSPDSSPDSSPSVSPSP TDSPAASPADSGSPAASPDSDS
Sbjct: 121 ESSPSPAASAPTSPSEAPASNSPDSSPDSSPSVSPSPDTDSPAASPADSGSPAASPDSDS 180
Query: 181 SSPPSPTPDAADSPVADGPSEADGPSEADGPSEADGTISDSPADSPDGDADSGTSALKLT 237
SSPPSPTPDAADSPVADGPSE DGP+ SDSPAD+PDGDADSGTS+LKLT
Sbjct: 181 SSPPSPTPDAADSPVADGPSEVDGPT------------SDSPADAPDGDADSGTSSLKLT 240
BLAST of CmoCh14G007060 vs. ExPASy TrEMBL
Match: A0A5A7VIK3 (Mucin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11681G00010 PE=4 SV=1) HSP 1 Score: 126.7 bits (317), Expect = 1.3e-25 Identity = 134/247 (54.25%), Postives = 153/247 (61.94%), Query Frame = 0
Query: 1 MASQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTP 60
MASQS VLVFALIFVAAVAG FAEAPT +PS SP+PK++PSDSE+ SPSSS
Sbjct: 1 MASQS-VLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSS--------- 60
Query: 61 ADTPADTPADTPAGTPADTPADTPADTPAETPADAPAASSE-SSPSPSASAP-TSPSEAP 120
+PA +P ASSE +SPSP+AS+P +S S+AP
Sbjct: 61 ------------------------------SPAASPKASSEATSPSPAASSPSSSSSDAP 120
Query: 121 ASNSPDSSPDSSPSVSPSPATDSPAASPADSGSP---------AASPDSDSSSPPSPTPD 180
S+SP SSP SSPSVSPSPATDSPA SPA + SP AASPDSD SSPPS PD
Sbjct: 121 TSDSPTSSPKSSPSVSPSPATDSPADSPA-ADSPADNVADTPTAASPDSDVSSPPS--PD 180
Query: 181 AADSPVADGPSEADGPSEADGPSEADGTISDSPADSPDGDADSGTSALKLTSAAVCGAVA 237
AAD+P A ADGP ADG +DSPADSP GD S + LKLTSA V G +A
Sbjct: 181 AADAPTA-----------ADGPMAADGPTADSPADSPAGDDKSSGTDLKLTSAVVGGVIA 192
BLAST of CmoCh14G007060 vs. ExPASy TrEMBL
Match: A0A1S3BND1 (mucin-1 OS=Cucumis melo OX=3656 GN=LOC103491750 PE=4 SV=1) HSP 1 Score: 126.3 bits (316), Expect = 1.7e-25 Identity = 134/247 (54.25%), Postives = 153/247 (61.94%), Query Frame = 0
Query: 1 MASQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTP 60
MASQS VLVFALIFVAAVAG FAEAPT +PS SP+PK++PSDSE+ SPSSS
Sbjct: 1 MASQS-VLVFALIFVAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSS--------- 60
Query: 61 ADTPADTPADTPAGTPADTPADTPADTPAETPADAPAASSE-SSPSPSASAP-TSPSEAP 120
+PA +P ASSE +SPSP+AS+P +S S+AP
Sbjct: 61 ------------------------------SPAASPKASSETTSPSPAASSPSSSSSDAP 120
Query: 121 ASNSPDSSPDSSPSVSPSPATDSPAASPADSGSP---------AASPDSDSSSPPSPTPD 180
S+SP SSP SSPSVSPSPATDSPA SPA + SP AASPDSD SSPPS PD
Sbjct: 121 TSDSPTSSPKSSPSVSPSPATDSPADSPA-ADSPADNVADTPTAASPDSDVSSPPS--PD 180
Query: 181 AADSPVADGPSEADGPSEADGPSEADGTISDSPADSPDGDADSGTSALKLTSAAVCGAVA 237
AAD+P A ADGP ADG +DSPADSP GD S + LKLTSA V G +A
Sbjct: 181 AADAPTA-----------ADGPIAADGPTADSPADSPAGDDKSSGTDLKLTSAVVGGVIA 192
BLAST of CmoCh14G007060 vs. ExPASy TrEMBL
Match: A0A0A0LDP4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G593190 PE=4 SV=1) HSP 1 Score: 122.5 bits (306), Expect = 2.4e-24 Identity = 128/239 (53.56%), Postives = 150/239 (62.76%), Query Frame = 0
Query: 1 MASQSFVLVFALIFVAAVAGAFAEAPTATPSESPAPKSAPSDSEASSPSSSPASSPADTP 60
MASQ+ VLVFALIF+AAVAG FAEAPT +PS SP+PK++PSDSE+ SPSSS
Sbjct: 1 MASQT-VLVFALIFLAAVAGVFAEAPTESPSTSPSPKASPSDSESPSPSSS--------- 60
Query: 61 ADTPADTPADTPAGTPADTPADTPADTPAETPADAPAASSESSPSPSASAPTSPSEAPAS 120
+PAG+P +P T SPSP+AS+P+S S+AP S
Sbjct: 61 ----------SPAGSPKASPETT-------------------SPSPAASSPSSSSDAPTS 120
Query: 121 NSPDSSPDSSPSVSPSPATDSPAASPADSGSP--------------AASPDSDSSSPPSP 180
NSP SSP SSPSVSPSPATDSP+ SPA S SP AASPDSD SSPPS
Sbjct: 121 NSPTSSPTSSPSVSPSPATDSPSDSPA-SDSPVADSPADSPADTPTAASPDSDVSSPPS- 180
Query: 181 TPDAADSPVADGPSEADGPSEADGPSEADG-TISDSP--ADSPDGDADSGTSALKLTSA 223
PDAAD+P ADGP+ ADGP+ ADGP+ ADG T +D P AD P AD T+A T+A
Sbjct: 181 -PDAADAPTADGPAAADGPTAADGPTAADGPTAADGPTAADGPTA-ADGPTAADGPTAA 196
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| O10341 | 2.7e-04 | 40.91 | Uncharacterized 29.3 kDa protein OS=Orgyia pseudotsugata multicapsid polyhedrosi... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A6J1F318 | 4.3e-98 | 100.00 | mucin-1-like OS=Cucurbita moschata OX=3662 GN=LOC111441724 PE=4 SV=1 | [more] |
| A0A6J1J779 | 9.3e-77 | 81.78 | mucin-1-like OS=Cucurbita maxima OX=3661 GN=LOC111481994 PE=4 SV=1 | [more] |
| A0A5A7VIK3 | 1.3e-25 | 54.25 | Mucin-1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold11681G00010 PE=4... | [more] |
| A0A1S3BND1 | 1.7e-25 | 54.25 | mucin-1 OS=Cucumis melo OX=3656 GN=LOC103491750 PE=4 SV=1 | [more] |
| A0A0A0LDP4 | 2.4e-24 | 53.56 | Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G593190 PE=4 SV=1 | [more] |
| Match Name | E-value | Identity | Description | |
|---|
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 31..61 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 24..214 |
| None | No IPR available | MOBIDB_LITE | mobidb-lite | disorder_prediction | coord: 96..158 |
Relationships
The following mRNA feature(s) are a part of this gene:
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