CmoCh14G006710 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G006710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	50S ribosomal protein L12, chloroplastic-like
Location	Cmo_Chr14: 3409499 .. 3410071 (-)
RNA-Seq Expression	CmoCh14G006710
Synteny	CmoCh14G006710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCGCTCTCTCCACCGCTTCGCTCCGATTCCCTTCTTGTTCTTCATCCTCTTATCCATCAAATTTCTCCCATTCCCTCAGATCCACTTCAATCCAATTTCCATTCTCTTTCTCCTCCACCAATCTCTCTCTTCGCTTTGTTCATTGCCGCCCACTCTCTGCCGCCGCTGTGCCGGAGAAAGTTACAGAAATCGGCGATGTCATCTCCAAGTTGACTCTCGAAGAGGCTCGTACTCTAGTTGATTACCTCCAAGAGAAACTTGGTGTTTCCGCCGCCGCTTTCGCGCCTGCCGCCGTCGTCGTTGCTCCTGGCGCAGCTGCCGGAGGTGACGATGCGGCTGCCGTTGAGGAGAAGACGGAGTTCGATGTTGTTATTGAGGAAGTGCCGAGTAATGCGAGGATTTCGGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAAGCGAAGGAGCTGATTGAAGGTTTGCCGAAGAAGTTTAAAGAAGGAATATCGAAGGAAGAGGCGGAGGATGCGAAGAAGCAGCTTGAAGAGGCTGGCGCAAAGATTGCTATCGTTTGA

mRNA sequence

ATGTCTTCCGCTCTCTCCACCGCTTCGCTCCGATTCCCTTCTTGTTCTTCATCCTCTTATCCATCAAATTTCTCCCATTCCCTCAGATCCACTTCAATCCAATTTCCATTCTCTTTCTCCTCCACCAATCTCTCTCTTCGCTTTGTTCATTGCCGCCCACTCTCTGCCGCCGCTGTGCCGGAGAAAGTTACAGAAATCGGCGATGTCATCTCCAAGTTGACTCTCGAAGAGGCTCGTACTCTAGTTGATTACCTCCAAGAGAAACTTGGTGTTTCCGCCGCCGCTTTCGCGCCTGCCGCCGTCGTCGTTGCTCCTGGCGCAGCTGCCGGAGGTGACGATGCGGCTGCCGTTGAGGAGAAGACGGAGTTCGATGTTGTTATTGAGGAAGTGCCGAGTAATGCGAGGATTTCGGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAAGCGAAGGAGCTGATTGAAGGTTTGCCGAAGAAGTTTAAAGAAGGAATATCGAAGGAAGAGGCGGAGGATGCGAAGAAGCAGCTTGAAGAGGCTGGCGCAAAGATTGCTATCGTTTGA

Coding sequence (CDS)

ATGTCTTCCGCTCTCTCCACCGCTTCGCTCCGATTCCCTTCTTGTTCTTCATCCTCTTATCCATCAAATTTCTCCCATTCCCTCAGATCCACTTCAATCCAATTTCCATTCTCTTTCTCCTCCACCAATCTCTCTCTTCGCTTTGTTCATTGCCGCCCACTCTCTGCCGCCGCTGTGCCGGAGAAAGTTACAGAAATCGGCGATGTCATCTCCAAGTTGACTCTCGAAGAGGCTCGTACTCTAGTTGATTACCTCCAAGAGAAACTTGGTGTTTCCGCCGCCGCTTTCGCGCCTGCCGCCGTCGTCGTTGCTCCTGGCGCAGCTGCCGGAGGTGACGATGCGGCTGCCGTTGAGGAGAAGACGGAGTTCGATGTTGTTATTGAGGAAGTGCCGAGTAATGCGAGGATTTCGGTGATTAAGGCTGTTAGGGCTTTGACGAGCTTGGCGTTGAAGGAAGCGAAGGAGCTGATTGAAGGTTTGCCGAAGAAGTTTAAAGAAGGAATATCGAAGGAAGAGGCGGAGGATGCGAAGAAGCAGCTTGAAGAGGCTGGCGCAAAGATTGCTATCGTTTGA

Protein sequence

MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVPEKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAVEEKTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAIV

Homology

[Close]

BLAST of CmoCh14G006710 vs. ExPASy Swiss-Prot
Match: P02398 (50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 PE=1 SV=2)

HSP 1 Score: 193.7 bits (491), Expect = 1.8e-48
Identity = 119/193 (61.66%), Postives = 148/193 (76.68%), Query Frame = 0


Query: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSL---RFVHCRPLSAA 60
           M++  + A+L  PS   +S+P++ +       +QFPF  ++  +SL   R    RP++A 
Sbjct: 1   MAATTTMATLNLPSL--TSHPNSSTFPKHPQPLQFPFRTTTNPISLSSTRTTRLRPIAAV 60

Query: 61  AVPEKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAV 120
             PEK+ ++G  +S LTLEEAR LVD+LQ+KLGVSAA+FAPAA V APGA A  D A AV
Sbjct: 61  EAPEKIEQLGTQLSGLTLEEARVLVDWLQDKLGVSAASFAPAAAVAAPGAPA--DAAPAV 120

Query: 121 EEKTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDV I+EVPSNARISVIKAVRALTSL LKEAKELIEGLPKK KEG+SK++AEDAK
Sbjct: 121 EEKTEFDVSIDEVPSNARISVIKAVRALTSLGLKEAKELIEGLPKKLKEGVSKDDAEDAK 180

Query: 181 KQLEEAGAKIAIV 191
           KQLE+AGAK++IV
Sbjct: 181 KQLEDAGAKVSIV 189

[Close]

BLAST of CmoCh14G006710 vs. ExPASy Swiss-Prot
Match: P36688 (50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 3.1e-48
Identity = 121/189 (64.02%), Postives = 148/189 (78.31%), Query Frame = 0


Query: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60
           M+S LST +LR PS S+++  ++ S      +++FP        + R    RPL+A   P
Sbjct: 1   MASTLSTITLRSPSPSTAT-STHASIPFPKKTLEFPIRTPKLQ-NRRATFLRPLAAVEAP 60

Query: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAVEEK 120
           EKV ++GD IS LTL +A+ LV+YLQ+KLGV+AA+FAPAAVV APGAAA  +  A VEEK
Sbjct: 61  EKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVVAAPGAAA--EAPAVVEEK 120

Query: 121 TEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVI+EVPSNARI+ IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EEAGAKIAI 190
           EEAGAK++I
Sbjct: 181 EEAGAKVSI 185

[Close]

BLAST of CmoCh14G006710 vs. ExPASy Swiss-Prot
Match: P24929 (50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 5.4e-48
Identity = 121/189 (64.02%), Postives = 147/189 (77.78%), Query Frame = 0


Query: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60
           M+S LST +LR PS S++S  ++ S      +++FP      +   R    RPL+A   P
Sbjct: 1   MASTLSTITLRSPSPSTAS-STHASIPFPKKALEFPIRTPKLH-HRRATFLRPLAAVEAP 60

Query: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAVEEK 120
           EKV ++GD IS LTL +A+ LV+YLQ+KLGV+AA+FAPAAV  APGAAA  +  A VEEK
Sbjct: 61  EKVVQLGDEISNLTLADAQKLVEYLQDKLGVTAASFAPAAVAAAPGAAA--EAPAVVEEK 120

Query: 121 TEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVI+EVPSNARI+ IKAVRALTSLALKEAKELIEGLPKKFKEG+SK+EAEDAKKQL
Sbjct: 121 TEFDVVIDEVPSNARIATIKAVRALTSLALKEAKELIEGLPKKFKEGVSKDEAEDAKKQL 180

Query: 181 EEAGAKIAI 190
           EEAGAK++I
Sbjct: 181 EEAGAKVSI 185

[Close]

BLAST of CmoCh14G006710 vs. ExPASy Swiss-Prot
Match: P36212 (50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12C PE=2 SV=2)

HSP 1 Score: 183.3 bits (464), Expect = 2.5e-45
Identity = 119/188 (63.30%), Postives = 142/188 (75.53%), Query Frame = 0


Query: 4   ALSTASLRFPSCSSSSYPSNFSHSLRS--TSIQFPFSFSSTNLSLRFVHCRPLSAAAVPE 63
           A +T S+     SSS   S  +H   S  T+I+FPF  SS++ S R ++ RP+SA   PE
Sbjct: 2   ASTTLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISAVEAPE 61

Query: 64  KVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAVEEKT 123
           K+ +IG  IS LTLEEAR LVDYLQ+K GVS  + APAA  VA  A A G  AA VEE+T
Sbjct: 62  KIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVA--APADGGAAAVVEEQT 121

Query: 124 EFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLE 183
           EFDVVI EVPS++RI+VIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK LE
Sbjct: 122 EFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLE 181

Query: 184 EAGAKIAI 190
           EAGAK++I
Sbjct: 182 EAGAKVSI 186

[Close]

BLAST of CmoCh14G006710 vs. ExPASy Swiss-Prot
Match: P36210 (50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL12A PE=2 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 3.3e-45
Identity = 121/194 (62.37%), Postives = 147/194 (75.77%), Query Frame = 0


Query: 2   SSALSTASLRFPSCSSSSYP--SNFSH-SLRSTSIQFPFSF---SSTNLSLRFVHCRPLS 61
           S+ LS A+    +  SSSYP  ++ +H   R+T+I+FP  F   SS+ L+ R  H RP++
Sbjct: 3   STTLSIAT----TIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIA 62

Query: 62  AAAVPEKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAA 121
           A   PEK+ +IG  IS LTLEEAR LVDYLQ+K GVS  + APAA  VA  A A G  AA
Sbjct: 63  AVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVA--APADGGAAA 122

Query: 122 AVEEKTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAED 181
            VEE+TEFDVVI EVPS++RI+VIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+
Sbjct: 123 VVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 182

Query: 182 AKKQLEEAGAKIAI 190
           AKK LEEAGAK++I
Sbjct: 183 AKKTLEEAGAKVSI 190

[Close]

BLAST of CmoCh14G006710 vs. ExPASy TrEMBL
Match: A0A6J1F403 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111441912 PE=3 SV=1)

HSP 1 Score: 334.7 bits (857), Expect = 2.5e-88
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60
           MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP
Sbjct: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAVEEK 120
           EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAVEEK 120

Query: 121 TEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 191
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of CmoCh14G006710 vs. ExPASy TrEMBL
Match: A0A6J1J1D9 (50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481837 PE=3 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 8.0e-87
Identity = 187/190 (98.42%), Postives = 188/190 (98.95%), Query Frame = 0


Query: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60
           MSSALSTASLR PSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP
Sbjct: 1   MSSALSTASLRLPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60

Query: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAVEEK 120
           EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAV VAPGAA+GGDDAAAVEEK
Sbjct: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVAVAPGAASGGDDAAAVEEK 120

Query: 121 TEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180
           TEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL
Sbjct: 121 TEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQL 180

Query: 181 EEAGAKIAIV 191
           EEAGAKIAIV
Sbjct: 181 EEAGAKIAIV 190

[Close]

BLAST of CmoCh14G006710 vs. ExPASy TrEMBL
Match: A0A5A7UJJ4 (50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1545G00330 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.1e-75
Identity = 171/193 (88.60%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MSSALSTASLR--FPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAA 60
           MSS LSTASLR   PS SSSSYPSNFSHSL+ T ++FPFSF+ TNLSLR +H RP+SA A
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDD-AAAV 120
           VPEKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAV VAPGAAAGGDD AAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 191
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of CmoCh14G006710 vs. ExPASy TrEMBL
Match: A0A1S3B8B3 (50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103487096 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.1e-75
Identity = 171/193 (88.60%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MSSALSTASLR--FPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAA 60
           MSS LSTASLR   PS SSSSYPSNFSHSL+ T ++FPFSF+ TNLSLR +H RP+SA A
Sbjct: 1   MSSTLSTASLRSPSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVA 60

Query: 61  VPEKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDD-AAAV 120
           VPEKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPAAV VAPGAAAGGDD AAAV
Sbjct: 61  VPEKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAAVAVAPGAAAGGDDAAAAV 120

Query: 121 EEKTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180
           EEKTEFDVVIEEVPSNARI+VIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK
Sbjct: 121 EEKTEFDVVIEEVPSNARIAVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAK 180

Query: 181 KQLEEAGAKIAIV 191
           KQLEEAGAKIAIV
Sbjct: 181 KQLEEAGAKIAIV 193

[Close]

BLAST of CmoCh14G006710 vs. ExPASy TrEMBL
Match: A0A0A0LHZ4 (Ribosomal protein L12-C OS=Cucumis sativus OX=3659 GN=Csa_3G837570 PE=3 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.6e-74
Identity = 166/191 (86.91%), Postives = 177/191 (92.67%), Query Frame = 0


Query: 1   MSSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAVP 60
           MSS LSTASLR PS SSSSYPSNFSHSL+ T ++FPFSF+ TNLSLR +H RP+SA AVP
Sbjct: 1   MSSTLSTASLRSPSSSSSSYPSNFSHSLKPTPLRFPFSFAPTNLSLRLIHHRPISAVAVP 60

Query: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDD-AAAVEE 120
           EKV+EIGDVISKLTLEEARTLVDYLQEKLGVSAA+FAPA   VAPG AAGGDD AAAVEE
Sbjct: 61  EKVSEIGDVISKLTLEEARTLVDYLQEKLGVSAASFAPAPATVAPGTAAGGDDAAAAVEE 120

Query: 121 KTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180
           KTEFDVVIEEVPSNARI+VIK+VRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ
Sbjct: 121 KTEFDVVIEEVPSNARIAVIKSVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQ 180

Query: 181 LEEAGAKIAIV 191
           LEEAGAKI+IV
Sbjct: 181 LEEAGAKISIV 191

[Close]

BLAST of CmoCh14G006710 vs. TAIR 10
Match: AT3G27850.1 (ribosomal protein L12-C )

HSP 1 Score: 183.3 bits (464), Expect = 1.8e-46
Identity = 119/188 (63.30%), Postives = 142/188 (75.53%), Query Frame = 0


Query: 4   ALSTASLRFPSCSSSSYPSNFSHSLRS--TSIQFPFSFSSTNLSLRFVHCRPLSAAAVPE 63
           A +T S+     SSS   S  +H   S  T+I+FPF  SS++ S R ++ RP+SA   PE
Sbjct: 2   ASTTLSIATTIRSSSPLTSASTHHFLSKPTAIEFPFRLSSSS-SHRAINLRPISAVEAPE 61

Query: 64  KVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAVEEKT 123
           K+ +IG  IS LTLEEAR LVDYLQ+K GVS  + APAA  VA  A A G  AA VEE+T
Sbjct: 62  KIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVA--APADGGAAAVVEEQT 121

Query: 124 EFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLE 183
           EFDVVI EVPS++RI+VIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+AKK LE
Sbjct: 122 EFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEEAKKTLE 181

Query: 184 EAGAKIAI 190
           EAGAK++I
Sbjct: 182 EAGAKVSI 186

[Close]

BLAST of CmoCh14G006710 vs. TAIR 10
Match: AT3G27830.1 (ribosomal protein L12-A )

HSP 1 Score: 183.0 bits (463), Expect = 2.3e-46
Identity = 121/194 (62.37%), Postives = 147/194 (75.77%), Query Frame = 0


Query: 2   SSALSTASLRFPSCSSSSYP--SNFSH-SLRSTSIQFPFSF---SSTNLSLRFVHCRPLS 61
           S+ LS A+    +  SSSYP  ++ +H   R+T+I+FP  F   SS+ L+ R  H RP++
Sbjct: 3   STTLSIAT----TIRSSSYPTLASINHFPSRTTTIEFPSRFGGGSSSTLTHRATHLRPIA 62

Query: 62  AAAVPEKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAA 121
           A   PEK+ +IG  IS LTLEEAR LVDYLQ+K GVS  + APAA  VA  A A G  AA
Sbjct: 63  AVEAPEKIEKIGSEISSLTLEEARILVDYLQDKFGVSPLSLAPAAAAVA--APADGGAAA 122

Query: 122 AVEEKTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAED 181
            VEE+TEFDVVI EVPS++RI+VIKAVRALTSLALKEAKELIEGLPKKFKEGI+K+EAE+
Sbjct: 123 VVEEQTEFDVVINEVPSSSRIAVIKAVRALTSLALKEAKELIEGLPKKFKEGITKDEAEE 182

Query: 182 AKKQLEEAGAKIAI 190
           AKK LEEAGAK++I
Sbjct: 183 AKKTLEEAGAKVSI 190

[Close]

BLAST of CmoCh14G006710 vs. TAIR 10
Match: AT3G27840.1 (ribosomal protein L12-B )

HSP 1 Score: 156.4 bits (394), Expect = 2.3e-38
Identity = 102/192 (53.12%), Postives = 131/192 (68.23%), Query Frame = 0


Query: 2   SSALSTASLRFPSCSSSSYPSNFSHSLRSTSIQFPFSF---SSTNLSLRFVHCRPLSAAA 61
           ++ LS A+    S  SS   S      R  SI+FPFSF   SS+ LS R ++  P+SA  
Sbjct: 3   ATTLSIATTIRSSSFSSGLASAHHFPSRPLSIEFPFSFGVSSSSTLSHRAIYLHPISAVK 62

Query: 62  VPEKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAGGDDAAAVE 121
            P+K+ +IG  IS LTLEE+R LVDY+Q+K GVS    APAA  + P    GG   A+VE
Sbjct: 63  TPKKIKKIGSEISSLTLEESRILVDYVQDKFGVSILFSAPAAAALPPPLDNGG-ATASVE 122

Query: 122 EKTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKK 181
            +T FDVVI +VP   RI+VI A+RA+TSL+L E+KELIEG PKKFKEG++K+EAE+ K 
Sbjct: 123 RQTTFDVVINDVPRGNRIAVITAIRAMTSLSLSESKELIEGFPKKFKEGVTKDEAEEDKT 182

Query: 182 QLEEAGAKIAIV 191
           QLEEAGAK++IV
Sbjct: 183 QLEEAGAKVSIV 193

[Close]

BLAST of CmoCh14G006710 vs. TAIR 10
Match: AT4G36420.1 (Ribosomal protein L12 family protein )

HSP 1 Score: 81.6 bits (200), Expect = 7.3e-16
Identity = 67/176 (38.07%), Postives = 104/176 (59.09%), Query Frame = 0


Query: 22  SNFSHSLRSTSIQFPFSFSSTNLSLRFVHCRPLSAAAV-PEKVTEIGDVISKLTLEEART 81
           S+FS  L+ST  +      S+++ L  +  R  S+ A   E V++I + +S LTL E   
Sbjct: 9   SHFSRVLKSTETR------SSSVQLFTIQSRSYSSPATQSENVSKIVNELSNLTLLETMD 68

Query: 82  LVDYLQEKLGVS----AAAFAPAAVVVAPGA--AAGGDDAAAVEE-KTEFDVVIEEVPSN 141
           L + L++KL +S     AA  P   +   GA  +AGG+     +E KT FDV+++   + 
Sbjct: 69  LTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAYDAV 128

Query: 142 ARISVIKAVRALTSLALKEAKELIEGLPKKFKEGISKEEAEDAKKQLEEAGAKIAI 190
           ++I VIK VR +T+L LKEAK+L+E  P   K+G+SKEEAE   ++L+  GAK+A+
Sbjct: 129 SKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAM 178

[Close]

BLAST of CmoCh14G006710 vs. TAIR 10
Match: AT1G70190.1 (Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like )

HSP 1 Score: 66.2 bits (160), Expect = 3.2e-11
Identity = 50/142 (35.21%), Postives = 74/142 (52.11%), Query Frame = 0


Query: 61  EKVTEIGDVISKLTLEEARTLVDYLQEKLGVSAAAFAPAAVVVAPGAAAG---------- 120
           ++V  + D IS LTL E   L   + +K G++     P   V+ PGA  G          
Sbjct: 69  DRVFRLVDEISSLTLLEISELGSIIMKKKGMTE---LPTVAVMKPGAGGGVGVGGGGGMV 128

Query: 121 ---GDDAAAVEEKTEFDVVIEEVPSNARISVIKAVRALTSLALKEAKELIEGLPKKFKEG 180
              G    A  EKT F++ +E   ++A+I +IK +R+ T L LKEAK L+E  P   K G
Sbjct: 129 SQSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAG 188

Query: 181 ISKEEAEDAKKQLEEAGAKIAI 190
           +SKEE E   ++L+  GAK+ +
Sbjct: 189 LSKEEGEKILEKLKALGAKVVL 207

The following BLAST results are available for this feature:

BLAST of CmoCh14G006710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P02398	1.8e-48	61.66	50S ribosomal protein L12, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL12 P...	[more]
P36688	3.1e-48	64.02	50S ribosomal protein L12, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=2 SV...	[more]
P24929	5.4e-48	64.02	50S ribosomal protein L12, chloroplastic OS=Nicotiana tabacum OX=4097 GN=RPL12 P...	[more]
P36212	2.5e-45	63.30	50S ribosomal protein L12-3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]
P36210	3.3e-45	62.37	50S ribosomal protein L12-1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RP...	[more]

BLAST of CmoCh14G006710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F403	2.5e-88	100.00	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L...	[more]
A0A6J1J1D9	8.0e-87	98.42	50S ribosomal protein L12, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]
A0A5A7UJJ4	3.1e-75	88.60	50S ribosomal protein L12 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3B8B3	3.1e-75	88.60	50S ribosomal protein L12, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC1034...	[more]
A0A0A0LHZ4	1.6e-74	86.91	Ribosomal protein L12-C OS=Cucumis sativus OX=3659 GN=Csa_3G837570 PE=3 SV=1	[more]

BLAST of CmoCh14G006710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27850.1	1.8e-46	63.30	ribosomal protein L12-C	[more]
AT3G27830.1	2.3e-46	62.37	ribosomal protein L12-A	[more]
AT3G27840.1	2.3e-38	53.13	ribosomal protein L12-B	[more]
AT4G36420.1	7.3e-16	38.07	Ribosomal protein L12 family protein	[more]
AT1G70190.1	3.2e-11	35.21	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/a...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000206	Ribosomal protein L7/L12	TIGRFAM	TIGR00855	TIGR00855	coord: 64..189 e-value: 2.8E-33 score: 113.0
IPR000206	Ribosomal protein L7/L12	PANTHER	PTHR45987	39S RIBOSOMAL PROTEIN L12	coord: 1..189
IPR000206	Ribosomal protein L7/L12	HAMAP	MF_00368	Ribosomal_L7_L12	coord: 58..190 score: 22.846746
IPR000206	Ribosomal protein L7/L12	CDD	cd00387	Ribosomal_L7_L12	coord: 61..189 e-value: 3.99345E-41 score: 133.435
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 123..189 e-value: 3.9E-24 score: 84.8
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	GENE3D	1.20.5.710	Single helix bin	coord: 56..118 e-value: 1.5E-13 score: 52.5
IPR036235	Ribosomal protein L7/L12, oligomerisation domain superfamily	SUPERFAMILY	48300	Ribosomal protein L7/12, oligomerisation (N-terminal) domain	coord: 62..125
IPR008932	Ribosomal protein L7/L12, oligomerisation	PFAM	PF16320	Ribosomal_L12_N	coord: 62..110 e-value: 4.6E-14 score: 51.8
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 119..189 e-value: 1.3E-25 score: 91.3
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 118..189
None	No IPR available	PANTHER	PTHR45987:SF16	50S RIBOSOMAL PROTEIN L12-1, CHLOROPLASTIC-RELATED	coord: 1..189

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G006710.1	CmoCh14G006710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome