CmoCh14G006070 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G006070
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	GOLD domain-containing protein
Location	Cmo_Chr14: 3072240 .. 3072716 (+)
RNA-Seq Expression	CmoCh14G006070
Synteny	CmoCh14G006070

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGAAGCAGTTGAAAGAGAATCAAGAACCATTCATCTCCGGCACCGGCGAAGACGAGTTTCCGGCGGCGGCGCCAGAGTCGATGAGGTCGATTTGTAATCCTTGTGATTTTCACTCTTCGAAGACGTGCAAGGAAGAGGAAACGGATCAGGAAAGTATAGGATCGTCGGAGGAAACTGAGTCGCCGAAATCAGTAGCGAAGGTTGCGGACTGGAGGAAGAAAATGGCGTATGTTCATTACCAGATTCGGAGAATCAGAGAGGAGGATTTGCATCTTGGTGAAGACATCGGCGAAGGCTTCAACGCGAAAGAGAAGATTAATTCGATCGGAGATTGGTGCGATGTTCGACATAATCCTCCTCACTCTTATCATAATGATCGCGTTAGTTCTCAGATGAATGTTGTAATTTTCTCGAGGCCGATTTTGCCTAGCTCGCCGCTCAGCGGGAAGAACAAATACAGAACTATAAGTTAA

mRNA sequence

ATGACGAAGCAGTTGAAAGAGAATCAAGAACCATTCATCTCCGGCACCGGCGAAGACGAGTTTCCGGCGGCGGCGCCAGAGTCGATGAGGTCGATTTGTAATCCTTGTGATTTTCACTCTTCGAAGACGTGCAAGGAAGAGGAAACGGATCAGGAAAGTATAGGATCGTCGGAGGAAACTGAGTCGCCGAAATCAGTAGCGAAGGTTGCGGACTGGAGGAAGAAAATGGCGTATGTTCATTACCAGATTCGGAGAATCAGAGAGGAGGATTTGCATCTTGGTGAAGACATCGGCGAAGGCTTCAACGCGAAAGAGAAGATTAATTCGATCGGAGATTGGTGCGATGTTCGACATAATCCTCCTCACTCTTATCATAATGATCGCGTTAGTTCTCAGATGAATGTTGTAATTTTCTCGAGGCCGATTTTGCCTAGCTCGCCGCTCAGCGGGAAGAACAAATACAGAACTATAAGTTAA

Coding sequence (CDS)

ATGACGAAGCAGTTGAAAGAGAATCAAGAACCATTCATCTCCGGCACCGGCGAAGACGAGTTTCCGGCGGCGGCGCCAGAGTCGATGAGGTCGATTTGTAATCCTTGTGATTTTCACTCTTCGAAGACGTGCAAGGAAGAGGAAACGGATCAGGAAAGTATAGGATCGTCGGAGGAAACTGAGTCGCCGAAATCAGTAGCGAAGGTTGCGGACTGGAGGAAGAAAATGGCGTATGTTCATTACCAGATTCGGAGAATCAGAGAGGAGGATTTGCATCTTGGTGAAGACATCGGCGAAGGCTTCAACGCGAAAGAGAAGATTAATTCGATCGGAGATTGGTGCGATGTTCGACATAATCCTCCTCACTCTTATCATAATGATCGCGTTAGTTCTCAGATGAATGTTGTAATTTTCTCGAGGCCGATTTTGCCTAGCTCGCCGCTCAGCGGGAAGAACAAATACAGAACTATAAGTTAA

Protein sequence

MTKQLKENQEPFISGTGEDEFPAAAPESMRSICNPCDFHSSKTCKEEETDQESIGSSEETESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKEKINSIGDWCDVRHNPPHSYHNDRVSSQMNVVIFSRPILPSSPLSGKNKYRTIS

Homology

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BLAST of CmoCh14G006070 vs. ExPASy TrEMBL
Match: A0A6J1F6X8 (uncharacterized protein LOC111441419 OS=Cucurbita moschata OX=3662 GN=LOC111441419 PE=4 SV=1)

HSP 1 Score: 325.9 bits (834), Expect = 9.6e-86
Identity = 158/158 (100.00%), Postives = 158/158 (100.00%), Query Frame = 0


Query: 1   MTKQLKENQEPFISGTGEDEFPAAAPESMRSICNPCDFHSSKTCKEEETDQESIGSSEET 60
           MTKQLKENQEPFISGTGEDEFPAAAPESMRSICNPCDFHSSKTCKEEETDQESIGSSEET
Sbjct: 1   MTKQLKENQEPFISGTGEDEFPAAAPESMRSICNPCDFHSSKTCKEEETDQESIGSSEET 60

Query: 61  ESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKEKINSIGDWCDVRHNP 120
           ESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKEKINSIGDWCDVRHNP
Sbjct: 61  ESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKEKINSIGDWCDVRHNP 120

Query: 121 PHSYHNDRVSSQMNVVIFSRPILPSSPLSGKNKYRTIS 159
           PHSYHNDRVSSQMNVVIFSRPILPSSPLSGKNKYRTIS
Sbjct: 121 PHSYHNDRVSSQMNVVIFSRPILPSSPLSGKNKYRTIS 158

[Close]

BLAST of CmoCh14G006070 vs. ExPASy TrEMBL
Match: A0A0A0LFA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827220 PE=4 SV=1)

HSP 1 Score: 255.4 bits (651), Expect = 1.6e-64
Identity = 135/165 (81.82%), Postives = 142/165 (86.06%), Query Frame = 0


Query: 1   MTKQLKENQEPFISGTGEDEFPAAAP-ESMRSICNPCDFHSSKTCKEEETDQESIGSSEE 60
           MTKQLKENQEP ISG    +F AA P ESMRSICNPCDFH+ KT KE ETDQESIGSSEE
Sbjct: 23  MTKQLKENQEPLISG---GDFSAAEPEESMRSICNPCDFHTPKTYKEVETDQESIGSSEE 82

Query: 61  TESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKEKINSI-GDWCDVRH 120
           TESPKSVAKVADWRKK+AYVHYQ+RRIREEDLHLGEDIGEGFNAKEKINSI GDWCDV H
Sbjct: 83  TESPKSVAKVADWRKKLAYVHYQVRRIREEDLHLGEDIGEGFNAKEKINSIGGDWCDVPH 142

Query: 121 N----PPH-SYHNDRVSSQMNVVIFSRPILPSSPLSGKNKYRTIS 159
           N    PPH S+HN RV SQMNVVIFSRPILPSSPL GKN +R +S
Sbjct: 143 NNPPPPPHSSFHNHRVGSQMNVVIFSRPILPSSPLGGKNTFRALS 184

[Close]

BLAST of CmoCh14G006070 vs. ExPASy TrEMBL
Match: A0A5D3DPQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G008140 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.7e-64
Identity = 135/164 (82.32%), Postives = 141/164 (85.98%), Query Frame = 0


Query: 1   MTKQLKENQEPFISGTGEDEFPAA-APESMRSICNPCDFHSSKTCKEEETDQESIGSSEE 60
           MTKQLKENQEP +SG    EFPA  A ESMR ICNPCDFH+ KT KE ETDQESIGSSEE
Sbjct: 1   MTKQLKENQEPLVSG---GEFPATEAEESMRLICNPCDFHTPKTYKEVETDQESIGSSEE 60

Query: 61  TESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKEKINSI-GDWCDVRH 120
           TESPKSVAKVADWRKK+AYVHYQ+RRIREEDLHLGEDIGEGFNAKEKINSI GDWCDVR 
Sbjct: 61  TESPKSVAKVADWRKKLAYVHYQVRRIREEDLHLGEDIGEGFNAKEKINSIGGDWCDVRD 120

Query: 121 N---PPH-SYHNDRVSSQMNVVIFSRPILPSSPLSGKNKYRTIS 159
           N   PPH S+HN RV SQMNVVIFSRPILPSSPL GKN +R IS
Sbjct: 121 NNNPPPHSSFHNHRVGSQMNVVIFSRPILPSSPLGGKNTFRAIS 161

[Close]

BLAST of CmoCh14G006070 vs. ExPASy TrEMBL
Match: A0A1S3B7Y8 (uncharacterized protein LOC103487011 OS=Cucumis melo OX=3656 GN=LOC103487011 PE=4 SV=1)

HSP 1 Score: 254.6 bits (649), Expect = 2.7e-64
Identity = 135/164 (82.32%), Postives = 141/164 (85.98%), Query Frame = 0


Query: 1   MTKQLKENQEPFISGTGEDEFPAA-APESMRSICNPCDFHSSKTCKEEETDQESIGSSEE 60
           MTKQLKENQEP +SG    EFPA  A ESMR ICNPCDFH+ KT KE ETDQESIGSSEE
Sbjct: 1   MTKQLKENQEPLVSG---GEFPATEAEESMRLICNPCDFHTPKTYKEVETDQESIGSSEE 60

Query: 61  TESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKEKINSI-GDWCDVRH 120
           TESPKSVAKVADWRKK+AYVHYQ+RRIREEDLHLGEDIGEGFNAKEKINSI GDWCDVR 
Sbjct: 61  TESPKSVAKVADWRKKLAYVHYQVRRIREEDLHLGEDIGEGFNAKEKINSIGGDWCDVRD 120

Query: 121 N---PPH-SYHNDRVSSQMNVVIFSRPILPSSPLSGKNKYRTIS 159
           N   PPH S+HN RV SQMNVVIFSRPILPSSPL GKN +R IS
Sbjct: 121 NNNPPPHSSFHNHRVGSQMNVVIFSRPILPSSPLGGKNTFRAIS 161

[Close]

BLAST of CmoCh14G006070 vs. ExPASy TrEMBL
Match: A0A438HDT5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_037425 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 4.0e-23
Identity = 67/111 (60.36%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 46  EEETDQESIGSSEETESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKE 105
           E+  DQES GSSEE ESPKSVAKV  W K  A VH Q+ RIREEDLHLGEDIGEG +AK+
Sbjct: 43  EDVDDQESGGSSEEFESPKSVAKVGKWTKNNACVHSQVLRIREEDLHLGEDIGEGLSAKD 102

Query: 106 KINSIGDWCDVRHNPPHSYHNDRVSSQMNVVIFSRPILPSSPLSGKNKYRT 157
           K++            PH +    VSSQM+VV+ SRPILPSSPLSGK   +T
Sbjct: 103 KVSG-----------PHHH----VSSQMDVVLLSRPILPSSPLSGKTPIKT 138

[Close]

BLAST of CmoCh14G006070 vs. TAIR 10
Match: AT5G15190.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 3.7e-05
Identity = 40/108 (37.04%), Postives = 54/108 (50.00%), Query Frame = 0


Query: 47  EETDQESIGSSE-ETESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKE 106
           EE + ES GSSE ETESP+SV +   W      VH Q+ +IREEDL +          ++
Sbjct: 24  EEVETESSGSSEAETESPRSVGR---WITAKEKVHNQVLKIREEDLCV--------LVED 83

Query: 107 KINSIGDWCDVRHNPPHSYHNDRVSSQMNVVIFSRPILPSSPLSGKNK 154
           K+ +  D           Y   R   + N+ + SR  LP SPLSGK +
Sbjct: 84  KVTNPED---------RRYLRPR---RFNLFLISRQNLPCSPLSGKGR 108

[Close]

BLAST of CmoCh14G006070 vs. TAIR 10
Match: AT5G15190.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 3.7e-05
Identity = 40/108 (37.04%), Postives = 54/108 (50.00%), Query Frame = 0


Query: 47  EETDQESIGSSE-ETESPKSVAKVADWRKKMAYVHYQIRRIREEDLHLGEDIGEGFNAKE 106
           EE + ES GSSE ETESP+SV +   W      VH Q+ +IREEDL +          ++
Sbjct: 24  EEVETESSGSSEAETESPRSVGR---WITAKEKVHNQVLKIREEDLCV--------LVED 83

Query: 107 KINSIGDWCDVRHNPPHSYHNDRVSSQMNVVIFSRPILPSSPLSGKNK 154
           K+ +  D           Y   R   + N+ + SR  LP SPLSGK +
Sbjct: 84  KVTNPED---------RRYLRPR---RFNLFLISRQNLPCSPLSGKGR 108

The following BLAST results are available for this feature:

BLAST of CmoCh14G006070 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G006070 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F6X8	9.6e-86	100.00	uncharacterized protein LOC111441419 OS=Cucurbita moschata OX=3662 GN=LOC1114414...	[more]
A0A0A0LFA4	1.6e-64	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827220 PE=4 SV=1	[more]
A0A5D3DPQ0	2.7e-64	82.32	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B7Y8	2.7e-64	82.32	uncharacterized protein LOC103487011 OS=Cucumis melo OX=3656 GN=LOC103487011 PE=...	[more]
A0A438HDT5	4.0e-23	60.36	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_037425 PE=4 SV=1	[more]

BLAST of CmoCh14G006070 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15190.1	3.7e-05	37.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G15190.2	3.7e-05	37.04	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 41..65

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G006070.1	CmoCh14G006070.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane