CmoCh14G005880 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G005880
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionF-box protein CPR30-like
LocationCmo_Chr14: 2994561 .. 2994953 (+)
RNA-Seq ExpressionCmoCh14G005880
SyntenyCmoCh14G005880
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTTGGTGGGTTTCATGGTCAAAGCTGATTACAATTGGGCCTCTTTTTGGAATTGATAAGCCATTAGCGTTTGTGGGTTCTAATTTACTCTTAATGGAAGCAATGGAAGGGCATGTGGTTTTGTACAATATTCGAGAGCTTCCCATAAAAGGGGCACCCAGAAGTGTTTCAAGCTACTCAAGCTACTACTTTTGTGGAGAGTATGATATCGGTGAAAGGAGGAAATAACTTGAAATATGAAATTTGAATCTAAGTTTTAGTTTGTGCACAGAGTCTATGTACTTTTGAATCCTTACTTTAGATTTTATACAAAATCATCTGCTTCCTTACACAAAACCTCAGTGTGATTTTGGAACTAAACTAATGATCGATGATAATAACAAGATCTAG

mRNA sequence

ATGATTTGGTGGGTTTCATGGTCAAAGCTGATTACAATTGGGCCTCTTTTTGGAATTGATAAGCCATTAGCGTTTGTGGGTTCTAATTTACTCTTAATGGAAGCAATGGAAGGGCATGTGGTTTTGTACAATATTCGAGAGCTTCCCATAAAAGGGGCACCCAGAAGTGTTTCAAGCTACTCAAGCTACTACTTTTGTGGAGAGTATGATATCGATTTTATACAAAATCATCTGCTTCCTTACACAAAACCTCAGTGTGATTTTGGAACTAAACTAATGATCGATGATAATAACAAGATCTAG

Coding sequence (CDS)

ATGATTTGGTGGGTTTCATGGTCAAAGCTGATTACAATTGGGCCTCTTTTTGGAATTGATAAGCCATTAGCGTTTGTGGGTTCTAATTTACTCTTAATGGAAGCAATGGAAGGGCATGTGGTTTTGTACAATATTCGAGAGCTTCCCATAAAAGGGGCACCCAGAAGTGTTTCAAGCTACTCAAGCTACTACTTTTGTGGAGAGTATGATATCGATTTTATACAAAATCATCTGCTTCCTTACACAAAACCTCAGTGTGATTTTGGAACTAAACTAATGATCGATGATAATAACAAGATCTAG

Protein sequence

MIWWVSWSKLITIGPLFGIDKPLAFVGSNLLLMEAMEGHVVLYNIRELPIKGAPRSVSSYSSYYFCGEYDIDFIQNHLLPYTKPQCDFGTKLMIDDNNKI
Homology
BLAST of CmoCh14G005880 vs. ExPASy TrEMBL
Match: A0A6J1F5F2 (F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442473 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.6e-12
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 0

Query: 5   VSWSKLITIGPLFGIDKPLAFVGSNLLLMEAMEGHVVLYN-----IRELPIKGAPRSVSS 64
           VSWSKL+TIGPLFGI KPL FVGSN LLME++EG VVLYN     +RELP+KG P    +
Sbjct: 302 VSWSKLLTIGPLFGIGKPLVFVGSNELLMESIEGQVVLYNTRTKQLRELPMKGNPEEFQA 361

Query: 65  YSSYYF 66
             +  F
Sbjct: 362 TQATVF 367

BLAST of CmoCh14G005880 vs. ExPASy TrEMBL
Match: A0A6J1F3M5 (F-box/kelch-repeat protein At3g23880-like OS=Cucurbita moschata OX=3662 GN=LOC111442078 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.4e-10
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 0

Query: 5   VSWSKLITIGPLFGIDKPLAFVGSNLLLMEAMEGHVVLYNIR-----ELPIKGAPR 56
           VSWSKL+TIGPL+GI+KPL FVGS+ LLMEA EG V+LYN R     ++PIKG  R
Sbjct: 312 VSWSKLLTIGPLYGIEKPLVFVGSHELLMEANEGQVILYNTRTQQFIKVPIKGHER 367

BLAST of CmoCh14G005880 vs. ExPASy TrEMBL
Match: A0A6J1J6Y5 (F-box protein CPR1-like OS=Cucurbita maxima OX=3661 GN=LOC111482312 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.4e-10
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 5   VSWSKLITIGPLFGIDKPLAFVGSNLLLMEAMEGHVVLYN-----IRELPIKGAP 55
           VSWSKL+TIGPL GI+KPL FV S+ LLMEA EG +VLYN     ++ELPIKG P
Sbjct: 301 VSWSKLLTIGPLRGIEKPLVFVSSDELLMEANEGQIVLYNARIQQLKELPIKGHP 355

BLAST of CmoCh14G005880 vs. ExPASy TrEMBL
Match: A0A6J1J5F7 (F-box/kelch-repeat protein At3g23880-like OS=Cucurbita maxima OX=3661 GN=LOC111481910 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 5.4e-10
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0

Query: 5   VSWSKLITIGPLFGIDKPLAFVGSNLLLMEAMEGHVVLYN-----IRELPIKGAPR 56
           VSWSKL+TIGPL+GI+KPL FVGS+ LLMEA  G V+LYN      R+LPIKG  R
Sbjct: 312 VSWSKLLTIGPLYGIEKPLVFVGSHELLMEANGGQVILYNTRTQQFRKLPIKGHER 367

BLAST of CmoCh14G005880 vs. ExPASy TrEMBL
Match: A0A6J1G1S8 (F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111449868 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.7e-09
Identity = 40/80 (50.00%), Postives = 54/80 (67.50%), Query Frame = 0

Query: 5   VSWSKLITIGPLFGIDKPLAFVGSNLLLMEAMEGHVVLYNIRE-----LPIKGAPRSVSS 64
           VSWSKL+ IGP+FG+ KPL FV S+ LLM+A EG V+ YNI+      LPIKG P   S 
Sbjct: 287 VSWSKLLIIGPIFGVQKPLLFVNSDELLMDANEGQVICYNIKTHMTNVLPIKGLP---SV 346

Query: 65  YSSYYFCGEYDI-DFIQNHL 79
           Y + YF  ++D+ D  ++H+
Sbjct: 347 YGTCYF--DFDLQDERESHM 361

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F5F22.6e-1262.12F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111442473 PE=4 SV=1[more]
A0A6J1F3M52.4e-1066.07F-box/kelch-repeat protein At3g23880-like OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A6J1J6Y55.4e-1067.27F-box protein CPR1-like OS=Cucurbita maxima OX=3661 GN=LOC111482312 PE=4 SV=1[more]
A0A6J1J5F75.4e-1066.07F-box/kelch-repeat protein At3g23880-like OS=Cucurbita maxima OX=3661 GN=LOC1114... [more]
A0A6J1G1S82.7e-0950.00F-box protein CPR30-like OS=Cucurbita moschata OX=3662 GN=LOC111449868 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G005880.1CmoCh14G005880.1mRNA