CmoCh14G005760 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G005760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCmo_Chr14: 2940140 .. 2941084 (-)
RNA-Seq ExpressionCmoCh14G005760
SyntenyCmoCh14G005760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGCATCATTCAATCCCACCTCAAATCCCCCTTCGCCATTTCTGAAGGCTTCTGGATCCGCCTCATCATGCTCTACTCCAGCTCCGGTATGGTCGATCAAGCTATTCGCACTCTTGATCAGGTAATCCTGAACAAACCCTGCGATCTGTCAGAGAAATCGCTCTGTGCTGTTCTCTCTGTTTATCTCAACAATTCCATGCCTGAGAAGGTTCATGAGATGTTTAGAACCATTCCGGAGAAAATTGGTGTTACTCCGACTGTGGTTTCGCACAATCTGGTGCTGAAGGCATTTGTTCAGCAAAACGATCTTGAATCGGCTCGGAACTGGATCGATGAGTTGTACAAGGATGATGCTAAGGTCGTCCCTAACATTGACTCGTACAATATCTTCTTAGGAGCTTACTGGAACAAAGGCGATTTGGTCGGATTCGACGGGATTGTGAAGGAAATTTCAAAGAGAGGTTTGGAGTTCGATTTGGGTAGTTACAATTACAGGATTTTGAGGCTGTGCAAGAACAAGGAGTGTGCACGGGCCAAGAAATTGCTAGATTAGATGGTTTCAAAGGGTGTGAAGCCCAATTCTAGTAGCTATGATGCAATCATCCATGGCTACGGCAATGTTGGGGATATTGAATTGGCTACGAAAGTTCTGAAGAGTATGCTGGAGGATGGCCATGTCTCACCCAGTTCGCGAATCTATTATAGTTTGATTCGAAGCATGGTTAAGGAGGGGGAGTTTGATTTGGCATTGGAGACATGTAGAGAGATCATAAAGAGGAGGTGGGTTCCTCCATTTGAGGCAATGGAGGGTCTGGTTCGTGGATTGGTGTGTATATCAAAGGTTGAAGAGGCAAAAGAGGTTGTTGAAAAGACGAAGAAGATGCTCAAAGGACCTGCTATGGATTCGTGGGGGAAAATTGAAGCTGCTCTTTCGCTGTAG

mRNA sequence

ATGGATGGCATCATTCAATCCCACCTCAAATCCCCCTTCGCCATTTCTGAAGGCTTCTGGATCCGCCTCATCATGCTCTACTCCAGCTCCGGTATGGTCGATCAAGCTATTCGCACTCTTGATCAGGTAATCCTGAACAAACCCTGCGATCTGTCAGAGAAATCGCTCTGTGCTGTTCTCTCTGTTTATCTCAACAATTCCATGCCTGAGAAGGTTCATGAGATGTTTAGAACCATTCCGGAGAAAATTGGTGTTACTCCGACTGTGGTTTCGCACAATCTGGTGCTGAAGGCATTTGTTCAGCAAAACGATCTTGAATCGGCTCGGAACTGGATCGATGAGTTGTACAAGGATGATGCTAAGGTCGTCCCTAACATTGACTCGTACAATATCTTCTTAGGAGCTTACTGGAACAAAGGCGATTTGGTCGGATTCGACGGGATTGTGAAGGAAATTTCAAAGAGAGGTTTGGAGTTCGATTTGGGTAGTTACAATTACAGGATTTTGAGGCTGTGCAAGAACAAGGACTATGATGCAATCATCCATGGCTACGGCAATGTTGGGGATATTGAATTGGCTACGAAAGTTCTGAAGAGTATGCTGGAGGATGGCCATGTCTCACCCAGTTCGCGAATCTATTATAGTTTGATTCGAAGCATGGTTAAGGAGGGGGAGTTTGATTTGGCATTGGAGACATGTAGAGAGATCATAAAGAGGAGGTGGGTTCCTCCATTTGAGGCAATGGAGGGTCTGGTTCGTGGATTGGTGTGTATATCAAAGGTTGAAGAGGCAAAAGAGGTTGTTGAAAAGACGAAGAAGATGCTCAAAGGACCTGCTATGGATTCGTGGGGGAAAATTGAAGCTGCTCTTTCGCTGTAG

Coding sequence (CDS)

ATGGATGGCATCATTCAATCCCACCTCAAATCCCCCTTCGCCATTTCTGAAGGCTTCTGGATCCGCCTCATCATGCTCTACTCCAGCTCCGGTATGGTCGATCAAGCTATTCGCACTCTTGATCAGGTAATCCTGAACAAACCCTGCGATCTGTCAGAGAAATCGCTCTGTGCTGTTCTCTCTGTTTATCTCAACAATTCCATGCCTGAGAAGGTTCATGAGATGTTTAGAACCATTCCGGAGAAAATTGGTGTTACTCCGACTGTGGTTTCGCACAATCTGGTGCTGAAGGCATTTGTTCAGCAAAACGATCTTGAATCGGCTCGGAACTGGATCGATGAGTTGTACAAGGATGATGCTAAGGTCGTCCCTAACATTGACTCGTACAATATCTTCTTAGGAGCTTACTGGAACAAAGGCGATTTGGTCGGATTCGACGGGATTGTGAAGGAAATTTCAAAGAGAGGTTTGGAGTTCGATTTGGGTAGTTACAATTACAGGATTTTGAGGCTGTGCAAGAACAAGGACTATGATGCAATCATCCATGGCTACGGCAATGTTGGGGATATTGAATTGGCTACGAAAGTTCTGAAGAGTATGCTGGAGGATGGCCATGTCTCACCCAGTTCGCGAATCTATTATAGTTTGATTCGAAGCATGGTTAAGGAGGGGGAGTTTGATTTGGCATTGGAGACATGTAGAGAGATCATAAAGAGGAGGTGGGTTCCTCCATTTGAGGCAATGGAGGGTCTGGTTCGTGGATTGGTGTGTATATCAAAGGTTGAAGAGGCAAAAGAGGTTGTTGAAAAGACGAAGAAGATGCTCAAAGGACCTGCTATGGATTCGTGGGGGAAAATTGAAGCTGCTCTTTCGCTGTAG

Protein sequence

MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTKKMLKGPAMDSWGKIEAALSL
Homology
BLAST of CmoCh14G005760 vs. ExPASy Swiss-Prot
Match: Q8LE47 (Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PPR336 PE=2 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 1.1e-31
Identity = 93/317 (29.34%), Postives = 161/317 (50.79%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRT---LDQVILNKPCDLSEKSLC 60
           +DG I++    P   SE F    I+LY+ + M+D ++R    L++  +++    + KSL 
Sbjct: 103 LDGFIENR---PDLKSERFAAHAIVLYAQANMLDHSLRVFRDLEKFEISR----TVKSLN 162

Query: 61  AVLSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYK 120
           A+L   L     ++   ++  +P+  G+ P + ++N ++K F +     S+ + + E+ +
Sbjct: 163 ALLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMER 222

Query: 121 DDAKVVPNIDSYNIFLGAYW--NKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNK 180
              K  PN  S+ + +  ++  +K D VG   ++  +  RG+   + +YN RI  LCK K
Sbjct: 223 KGIK--PNSSSFGLMISGFYAEDKSDEVG--KVLAMMKDRGVNIGVSTYNIRIQSLCKRK 282

Query: 181 ----------------------DYDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIY 240
                                  Y  +IHG+ N  D E A K+ K M+  G   P S  Y
Sbjct: 283 KSKEAKALLDGMLSAGMKPNTVTYSHLIHGFCNEDDFEEAKKLFKIMVNRG-CKPDSECY 342

Query: 241 YSLIRSMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTKK 291
           ++LI  + K G+F+ AL  C+E +++ WVP F  M+ LV GL   SKVEEAKE++ + K+
Sbjct: 343 FTLIYYLCKGGDFETALSLCKESMEKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQVKE 402

BLAST of CmoCh14G005760 vs. ExPASy Swiss-Prot
Match: Q9SAB4 (Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g11630 PE=1 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.5e-28
Identity = 85/317 (26.81%), Postives = 160/317 (50.47%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRT---LDQVILNKPCDLSEKSLC 60
           +DG IQ+    P   SE F +R I+LY  + M+D++I+T   L+Q  + +    + KSL 
Sbjct: 98  LDGFIQN---QPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEIPR----TVKSLN 157

Query: 61  AVLSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYK 120
           A+L   L     ++ + ++  +P+  G+ P + ++N +++   +     S+ + + E+ +
Sbjct: 158 ALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMER 217

Query: 121 DDAKVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNK-- 180
              K  P   S+ + +  ++ +        +++ + + G+   + +YN  I  LCK K  
Sbjct: 218 KWIK--PTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKS 277

Query: 181 --------------------DYDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYS 240
                                Y  +IHG+ +  +++ A  + + M+ +G+  P S  Y++
Sbjct: 278 AEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGY-KPDSECYFT 337

Query: 241 LIRSMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTKKML 293
           LI  + K G+F+ AL  CRE +++ WVP F  M+ LV GL   SKV+EAKE++   K+  
Sbjct: 338 LIHCLCKGGDFETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEKF 397

BLAST of CmoCh14G005760 vs. ExPASy Swiss-Prot
Match: Q9LK58 (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana OX=3702 GN=At3g13150 PE=2 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.1e-26
Identity = 82/295 (27.80%), Postives = 150/295 (50.85%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQV-ILNKPCDLSEKSLCAV 60
           +D ++Q   K     SE F IR+++LY  SGM + A +  D++  LN  C+ + KS  A+
Sbjct: 106 IDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELN--CERTVKSFNAL 165

Query: 61  LSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDD 120
           LS Y+N+   ++  + F+ +PEK+G+TP +V++N ++KA  ++  ++   +  +EL K+ 
Sbjct: 166 LSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNG 225

Query: 121 AKVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNK---- 180
            +  P++ S+N  L  ++ +   V  D I   +  + L  ++ SYN R+  L +NK    
Sbjct: 226 FE--PDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTD 285

Query: 181 ------------------DYDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLI 240
                              Y+A+I  Y    ++E   K    M E G ++P +  Y  LI
Sbjct: 286 ALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKG-LTPDTVTYCMLI 345

Query: 241 RSMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTK 273
             + K+G+ D A+E   E IK + +      + +V  L+   K++EA ++V+  K
Sbjct: 346 PLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLVKNGK 395

BLAST of CmoCh14G005760 vs. ExPASy Swiss-Prot
Match: Q9LG23 (Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g55890 PE=1 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 1.3e-24
Identity = 84/300 (28.00%), Postives = 152/300 (50.67%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           ++ I++   K      EGF  R+I LY  +GM + A +  ++ + N+ C  S  S  A+L
Sbjct: 93  VEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEE-MPNRDCKRSVLSFNALL 152

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           S Y  +   + V E+F  +P K+ + P +VS+N ++KA  +++ L  A   +DE+     
Sbjct: 153 SAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGL 212

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRL---CKNKD- 180
           K  P+I ++N  L + + KG     + I  ++ ++ +  D+ +YN R+L L    K+K+ 
Sbjct: 213 K--PDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKEL 272

Query: 181 ------------------YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIR 240
                             ++A+I G  N G ++ A    K +++ G+  P    +  L+ 
Sbjct: 273 VNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGY-RPDKATFALLLP 332

Query: 241 SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVE--KTKKMLK 277
           +M K G+F+ A+E  +E   +R++     ++ LV  LV  SK EEA+E+V+  KT   LK
Sbjct: 333 AMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDELVKGSKREEAEEIVKIAKTNDFLK 388

BLAST of CmoCh14G005760 vs. ExPASy Swiss-Prot
Match: Q8GW57 (Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g80150 PE=2 SV=2)

HSP 1 Score: 111.3 bits (277), Expect = 1.9e-23
Identity = 75/291 (25.77%), Postives = 139/291 (47.77%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           ++ +++     P    EGF +R+IMLY  +GM  QA+ T   + L   C  S KS  A L
Sbjct: 90  IEDLLEHQKTLPQGRREGFIVRIIMLYGKAGMTKQALDTFFNMDL-YGCKRSVKSFNAAL 149

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
            V   N     + E     P K G+    VS N+ +K+F +   L+ A   + E+ K  +
Sbjct: 150 QVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEK--S 209

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNK----- 180
            + P++ +Y   + A +     V  +G+   +  +G + +L ++N RI  L   +     
Sbjct: 210 GLTPDVVTYTTLISALYKHERCVIGNGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDA 269

Query: 181 -----------------DYDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIR 240
                             Y+ +I G+      ++A +V  +M   G+  P+ +IY ++I 
Sbjct: 270 NDLLLLMPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMHGKGY-KPNLKIYQTMIH 329

Query: 241 SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVE 270
            + K G FDLA   C++ ++++W P  + +E L++GLV   ++++AK ++E
Sbjct: 330 YLCKAGNFDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQLDQAKSIME 376

BLAST of CmoCh14G005760 vs. ExPASy TrEMBL
Match: A0A6J1J8H6 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111482304 PE=4 SV=1)

HSP 1 Score: 535.0 bits (1377), Expect = 1.9e-148
Identity = 275/314 (87.58%), Postives = 281/314 (89.49%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           +DGIIQS LK P AISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL
Sbjct: 93  IDGIIQSQLKPPSAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 152

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNL LKAFVQQNDLE ARN IDELYKDDA
Sbjct: 153 SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLALKAFVQQNDLELARNLIDELYKDDA 212

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKD---- 180
           KVVPNIDSYNI LGAYWNKGDLVGFDGIVKEISKRGLEF+L +YNYRILRLCKNK+    
Sbjct: 213 KVVPNIDSYNILLGAYWNKGDLVGFDGIVKEISKRGLEFNLATYNYRILRLCKNKECARA 272

Query: 181 ------------------YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIR 240
                             YDAII+GYGNVGDIELATKVLKSMLEDGHVS SSRIYYSLIR
Sbjct: 273 KKLLDEMVSKGVKPNSSSYDAIIYGYGNVGDIELATKVLKSMLEDGHVSLSSRIYYSLIR 332

Query: 241 SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTKKMLKGP 293
           SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLV ISKVEEAKEVVEK KKMLKGP
Sbjct: 333 SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVGISKVEEAKEVVEKMKKMLKGP 392

BLAST of CmoCh14G005760 vs. ExPASy TrEMBL
Match: A0A6J1J6X0 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111482304 PE=4 SV=1)

HSP 1 Score: 519.6 bits (1337), Expect = 8.3e-144
Identity = 270/314 (85.99%), Postives = 276/314 (87.90%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           +DGIIQS LK P AISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL
Sbjct: 93  IDGIIQSQLKPPSAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 152

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNL LKAFVQQNDLE ARN IDELYKDDA
Sbjct: 153 SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLALKAFVQQNDLELARNLIDELYKDDA 212

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKD---- 180
           KVVPNIDSYNI LGAYWNKGDLVGFDGIVKEISKRGLEF+L +YNYRILRLCKNK+    
Sbjct: 213 KVVPNIDSYNILLGAYWNKGDLVGFDGIVKEISKRGLEFNLATYNYRILRLCKNKECARA 272

Query: 181 ------------------YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIR 240
                             YDAII+GYGNVGDIELATKVLKSMLEDGHVS SSRIYYSLIR
Sbjct: 273 KKLLDEMVSKGVKPNSSSYDAIIYGYGNVGDIELATKVLKSMLEDGHVSLSSRIYYSLIR 332

Query: 241 SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTKKMLKGP 293
           SMVKEGEF     TCREIIKRRWVPPFEAMEGLVRGLV ISKVEEAKEVVEK KKMLKGP
Sbjct: 333 SMVKEGEF-----TCREIIKRRWVPPFEAMEGLVRGLVGISKVEEAKEVVEKMKKMLKGP 392

BLAST of CmoCh14G005760 vs. ExPASy TrEMBL
Match: A0A5A7UGZ0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G007730 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.2e-129
Identity = 233/314 (74.20%), Postives = 262/314 (83.44%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           +D IIQSHLKSP A SEGFWIRLIMLYSS GMV QA+  LDQ IL+KPC+LSEKSLCA+L
Sbjct: 92  IDDIIQSHLKSPSATSEGFWIRLIMLYSSVGMVSQALHILDQAILHKPCNLSEKSLCAIL 151

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           SVYL+NSMPEKVHEMFR+ PEKIGVTPTV+SHNLVLKAFV+QNDL SARNWIDELYKDDA
Sbjct: 152 SVYLDNSMPEKVHEMFRSTPEKIGVTPTVISHNLVLKAFVRQNDLPSARNWIDELYKDDA 211

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKD---- 180
           KV+PNIDSY I LGAYW+ GD+VGFD I+KEI  RGLEF++ +YNYRI RLCKNK+    
Sbjct: 212 KVIPNIDSYTILLGAYWSNGDMVGFDEIMKEILNRGLEFNIATYNYRISRLCKNKECARA 271

Query: 181 ------------------YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIR 240
                             YD+IIHGY +VGDIE A K+LK MLEDGHVSP+SRIY+ LIR
Sbjct: 272 KKILDEMISKGVKPNSSSYDSIIHGYCDVGDIESAMKILKGMLEDGHVSPTSRIYFRLIR 331

Query: 241 SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTKKMLKGP 293
           SMVKEGEFDLAL+TCR+++KRRWVPPFE ME LVRGLV +SKVEEAKEVVEK KK LKGP
Sbjct: 332 SMVKEGEFDLALDTCRQMLKRRWVPPFETMEALVRGLVAMSKVEEAKEVVEKMKKRLKGP 391

BLAST of CmoCh14G005760 vs. ExPASy TrEMBL
Match: A0A1S3B7X6 (pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103486977 PE=4 SV=1)

HSP 1 Score: 472.6 bits (1215), Expect = 1.2e-129
Identity = 233/314 (74.20%), Postives = 262/314 (83.44%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           +D IIQSHLKSP A SEGFWIRLIMLYSS GMV QA+  LDQ IL+KPC+LSEKSLCA+L
Sbjct: 92  IDDIIQSHLKSPSATSEGFWIRLIMLYSSVGMVSQALHILDQAILHKPCNLSEKSLCAIL 151

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           SVYL+NSMPEKVHEMFR+ PEKIGVTPTV+SHNLVLKAFV+QNDL SARNWIDELYKDDA
Sbjct: 152 SVYLDNSMPEKVHEMFRSTPEKIGVTPTVISHNLVLKAFVRQNDLPSARNWIDELYKDDA 211

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKD---- 180
           KV+PNIDSY I LGAYW+ GD+VGFD I+KEI  RGLEF++ +YNYRI RLCKNK+    
Sbjct: 212 KVIPNIDSYTILLGAYWSNGDMVGFDEIMKEILNRGLEFNIATYNYRISRLCKNKECARA 271

Query: 181 ------------------YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIR 240
                             YD+IIHGY +VGDIE A K+LK MLEDGHVSP+SRIY+ LIR
Sbjct: 272 KKILDEMISKGVKPNSSSYDSIIHGYCDVGDIESAMKILKGMLEDGHVSPTSRIYFRLIR 331

Query: 241 SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTKKMLKGP 293
           SMVKEGEFDLAL+TCR+++KRRWVPPFE ME LVRGLV +SKVEEAKEVVEK KK LKGP
Sbjct: 332 SMVKEGEFDLALDTCRQMLKRRWVPPFETMEALVRGLVAMSKVEEAKEVVEKMKKRLKGP 391

BLAST of CmoCh14G005760 vs. ExPASy TrEMBL
Match: A0A0A0LF76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824840 PE=4 SV=1)

HSP 1 Score: 465.7 bits (1197), Expect = 1.4e-127
Identity = 234/314 (74.52%), Postives = 261/314 (83.12%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           +D IIQSH KSP A SEGFWIRLIMLYSS GMV+QA+  LDQ IL+K C+LSEKSLCA+L
Sbjct: 92  IDVIIQSHHKSPSATSEGFWIRLIMLYSSVGMVNQALYILDQAILHKSCNLSEKSLCAIL 151

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           SV+L+NSMPEKVHEMFR+IPEKIGVTPT VSHNLVLKAFV+QNDL SARNWIDEL KDDA
Sbjct: 152 SVFLDNSMPEKVHEMFRSIPEKIGVTPTAVSHNLVLKAFVRQNDLPSARNWIDELCKDDA 211

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKD---- 180
           KV+PNIDS+ I LGAYW+ GD++GFD I KEISKRGLEF+L +YNYRI RLCKNK+    
Sbjct: 212 KVIPNIDSFTILLGAYWSNGDMIGFDEIEKEISKRGLEFNLATYNYRISRLCKNKECARA 271

Query: 181 ------------------YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIR 240
                             YD+IIHGY +VGDIE A K+LK +LEDGHVSP+SRIYY LIR
Sbjct: 272 KKILDEMISKGVKPNSSSYDSIIHGYCDVGDIESAMKILKGILEDGHVSPTSRIYYRLIR 331

Query: 241 SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTKKMLKGP 293
           SMVKEGEF++ALETCRE IKRRWVPPFEAME LVRGLV +SKVEEAKEVVEK KK LKGP
Sbjct: 332 SMVKEGEFEMALETCRETIKRRWVPPFEAMEALVRGLVAMSKVEEAKEVVEKMKKRLKGP 391

BLAST of CmoCh14G005760 vs. TAIR 10
Match: AT1G61870.1 (pentatricopeptide repeat 336 )

HSP 1 Score: 138.7 bits (348), Expect = 7.7e-33
Identity = 93/317 (29.34%), Postives = 161/317 (50.79%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRT---LDQVILNKPCDLSEKSLC 60
           +DG I++    P   SE F    I+LY+ + M+D ++R    L++  +++    + KSL 
Sbjct: 103 LDGFIENR---PDLKSERFAAHAIVLYAQANMLDHSLRVFRDLEKFEISR----TVKSLN 162

Query: 61  AVLSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYK 120
           A+L   L     ++   ++  +P+  G+ P + ++N ++K F +     S+ + + E+ +
Sbjct: 163 ALLFACLVAKDYKEAKRVYIEMPKMYGIEPDLETYNRMIKVFCESGSASSSYSIVAEMER 222

Query: 121 DDAKVVPNIDSYNIFLGAYW--NKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNK 180
              K  PN  S+ + +  ++  +K D VG   ++  +  RG+   + +YN RI  LCK K
Sbjct: 223 KGIK--PNSSSFGLMISGFYAEDKSDEVG--KVLAMMKDRGVNIGVSTYNIRIQSLCKRK 282

Query: 181 ----------------------DYDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIY 240
                                  Y  +IHG+ N  D E A K+ K M+  G   P S  Y
Sbjct: 283 KSKEAKALLDGMLSAGMKPNTVTYSHLIHGFCNEDDFEEAKKLFKIMVNRG-CKPDSECY 342

Query: 241 YSLIRSMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTKK 291
           ++LI  + K G+F+ AL  C+E +++ WVP F  M+ LV GL   SKVEEAKE++ + K+
Sbjct: 343 FTLIYYLCKGGDFETALSLCKESMEKNWVPSFSIMKSLVNGLAKDSKVEEAKELIGQVKE 402

BLAST of CmoCh14G005760 vs. TAIR 10
Match: AT1G11630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 128.3 bits (321), Expect = 1.0e-29
Identity = 85/317 (26.81%), Postives = 160/317 (50.47%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRT---LDQVILNKPCDLSEKSLC 60
           +DG IQ+    P   SE F +R I+LY  + M+D++I+T   L+Q  + +    + KSL 
Sbjct: 98  LDGFIQN---QPDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEIPR----TVKSLN 157

Query: 61  AVLSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYK 120
           A+L   L     ++ + ++  +P+  G+ P + ++N +++   +     S+ + + E+ +
Sbjct: 158 ALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMER 217

Query: 121 DDAKVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNK-- 180
              K  P   S+ + +  ++ +        +++ + + G+   + +YN  I  LCK K  
Sbjct: 218 KWIK--PTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKS 277

Query: 181 --------------------DYDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYS 240
                                Y  +IHG+ +  +++ A  + + M+ +G+  P S  Y++
Sbjct: 278 AEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGY-KPDSECYFT 337

Query: 241 LIRSMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTKKML 293
           LI  + K G+F+ AL  CRE +++ WVP F  M+ LV GL   SKV+EAKE++   K+  
Sbjct: 338 LIHCLCKGGDFETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEKF 397

BLAST of CmoCh14G005760 vs. TAIR 10
Match: AT3G13150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 120.6 bits (301), Expect = 2.2e-27
Identity = 82/295 (27.80%), Postives = 150/295 (50.85%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQV-ILNKPCDLSEKSLCAV 60
           +D ++Q   K     SE F IR+++LY  SGM + A +  D++  LN  C+ + KS  A+
Sbjct: 106 IDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELN--CERTVKSFNAL 165

Query: 61  LSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDD 120
           LS Y+N+   ++  + F+ +PEK+G+TP +V++N ++KA  ++  ++   +  +EL K+ 
Sbjct: 166 LSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNG 225

Query: 121 AKVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNK---- 180
            +  P++ S+N  L  ++ +   V  D I   +  + L  ++ SYN R+  L +NK    
Sbjct: 226 FE--PDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTD 285

Query: 181 ------------------DYDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLI 240
                              Y+A+I  Y    ++E   K    M E G ++P +  Y  LI
Sbjct: 286 ALNLIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMKCYNEMKEKG-LTPDTVTYCMLI 345

Query: 241 RSMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTK 273
             + K+G+ D A+E   E IK + +      + +V  L+   K++EA ++V+  K
Sbjct: 346 PLLCKKGDLDRAVEVSEEAIKHKLLSRPNMYKPVVERLMGAGKIDEATQLVKNGK 395

BLAST of CmoCh14G005760 vs. TAIR 10
Match: AT1G55890.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 9.1e-26
Identity = 84/300 (28.00%), Postives = 152/300 (50.67%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           ++ I++   K      EGF  R+I LY  +GM + A +  ++ + N+ C  S  S  A+L
Sbjct: 93  VEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEE-MPNRDCKRSVLSFNALL 152

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           S Y  +   + V E+F  +P K+ + P +VS+N ++KA  +++ L  A   +DE+     
Sbjct: 153 SAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGL 212

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRL---CKNKD- 180
           K  P+I ++N  L + + KG     + I  ++ ++ +  D+ +YN R+L L    K+K+ 
Sbjct: 213 K--PDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKEL 272

Query: 181 ------------------YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIR 240
                             ++A+I G  N G ++ A    K +++ G+  P    +  L+ 
Sbjct: 273 VNLFGELKASGLKPDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHGY-RPDKATFALLLP 332

Query: 241 SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVE--KTKKMLK 277
           +M K G+F+ A+E  +E   +R++     ++ LV  LV  SK EEA+E+V+  KT   LK
Sbjct: 333 AMCKAGDFESAIELFKETFSKRYLVGQTTLQQLVDELVKGSKREEAEEIVKIAKTNDFLK 388

BLAST of CmoCh14G005760 vs. TAIR 10
Match: AT1G80150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 1.3e-24
Identity = 75/291 (25.77%), Postives = 139/291 (47.77%), Query Frame = 0

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           ++ +++     P    EGF +R+IMLY  +GM  QA+ T   + L   C  S KS  A L
Sbjct: 90  IEDLLEHQKTLPQGRREGFIVRIIMLYGKAGMTKQALDTFFNMDL-YGCKRSVKSFNAAL 149

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
            V   N     + E     P K G+    VS N+ +K+F +   L+ A   + E+ K  +
Sbjct: 150 QVLSFNPDLHTIWEFLHDAPSKYGIDIDAVSFNIAIKSFCELGILDGAYMAMREMEK--S 209

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNK----- 180
            + P++ +Y   + A +     V  +G+   +  +G + +L ++N RI  L   +     
Sbjct: 210 GLTPDVVTYTTLISALYKHERCVIGNGLWNLMVLKGCKPNLTTFNVRIQFLVNRRRAWDA 269

Query: 181 -----------------DYDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIR 240
                             Y+ +I G+      ++A +V  +M   G+  P+ +IY ++I 
Sbjct: 270 NDLLLLMPKLQVEPDSITYNMVIKGFFLARFPDMAERVYTAMHGKGY-KPNLKIYQTMIH 329

Query: 241 SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVE 270
            + K G FDLA   C++ ++++W P  + +E L++GLV   ++++AK ++E
Sbjct: 330 YLCKAGNFDLAYTMCKDCMRKKWYPNLDTVEMLLKGLVKKGQLDQAKSIME 376

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q8LE471.1e-3129.34Pentatricopeptide repeat-containing protein At1g61870, mitochondrial OS=Arabidop... [more]
Q9SAB41.5e-2826.81Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidop... [more]
Q9LK583.1e-2627.80Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana OX... [more]
Q9LG231.3e-2428.00Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidop... [more]
Q8GW571.9e-2325.77Pentatricopeptide repeat-containing protein At1g80150, mitochondrial OS=Arabidop... [more]
Match NameE-valueIdentityDescription
A0A6J1J8H61.9e-14887.58pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isofor... [more]
A0A6J1J6X08.3e-14485.99pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like isofor... [more]
A0A5A7UGZ01.2e-12974.20Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3B7X61.2e-12974.20pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like OS=Cuc... [more]
A0A0A0LF761.4e-12774.52Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G824840 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G61870.17.7e-3329.34pentatricopeptide repeat 336 [more]
AT1G11630.11.0e-2926.81Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT3G13150.12.2e-2727.80Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G55890.19.1e-2628.00Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT1G80150.11.3e-2425.77Tetratricopeptide repeat (TPR)-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 38..176
e-value: 2.4E-21
score: 77.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 177..291
e-value: 2.5E-16
score: 62.0
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 176..219
e-value: 1.1E-4
score: 22.2
coord: 84..136
e-value: 2.4E-4
score: 21.1
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 177..206
e-value: 1.1E-5
score: 23.2
coord: 212..243
e-value: 6.3E-5
score: 20.9
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 173..207
score: 8.911594
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 209..243
score: 9.021208
NoneNo IPR availablePANTHERPTHR46128:SF264REPEAT 336, PUTATIVE-RELATEDcoord: 13..176
coord: 177..290
NoneNo IPR availablePANTHERPTHR46128MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1coord: 13..176
coord: 177..290

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G005760.1CmoCh14G005760.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding