CmoCh14G004740 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G004740
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	protein CHUP1, chloroplastic-like
Location	Cmo_Chr14: 2333159 .. 2337093 (+)
RNA-Seq Expression	CmoCh14G004740
Synteny	CmoCh14G004740

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CACCGTATTCCAATATTGGAAGCCATAACCCGGCGCCGCCCCTTTGACTTTTACAGATCCTACAATTTTGGCCGTTTCAACACCTGTAAACGCTTGTAACCTCCCTACATTGATGGTTATGGGGCAATTGATGATCTGCAGGTTTCTCAAAGTTTCGATCGATCCGTCAAGCCATTCAGGTAATTCATCCACTCCTGGAAGCTCTCTGATTGTGAATCTCTGAAGCCTAAATTCGGCGTTCTCTAAGGTGAGTGTTAGTTGCTTGCAGCCCCAGATAACCAAATTCTGTAGTGATTTTAGATGTATCATCTCATTTGGCAACGATTTCAAAGTATTGCAATTGTAAATCATTAGGGTTTCAAGGTCTGCAAGGCACTCTGGCCGTTCGAATAGAATTTTTAGGTTTTTGCACCCTCCAATGGCGAGAAATTGCAGAGAAGTCATGGTTCCAACTCCGTTTTTGTGCAAATAAAGCTCTTTTGTTGTTATCCACAAGTATTTCAGGCTGATCAAATTCCTTATATCAGTTGGCAATTCTTTAAGTTCGGAACAAGATTCAAGAATCAAGGTTTGCAAACTTTGTAGATTGCAGATTGAATTCGGCAGCCGCTTGATGTTCTTATTTCCATGCAAGTCGAGGTATCTCAGGCTTTTAAGTGTTCCTATAGCATTTGGAATTTCCTCTATGTTTGCATTGCCTAAATGTAACACTCTTAAGCTGTTGTACTTCAGAATGCACATTCCAGGTAGGGATGCATTAGGTGGCACCATATCTCTTACATGGAAGGCTAGGGATTTTATTTCAGTGACTGGTTTGGTACCTACTAAGCCCTCAGACTGTTCTTGTGCGAGTACGTGTGCAAGTTTTTGGATAAGAGGGTGCAGTTTAAACCAGTAGCCGAGGCCATGTTCTTCAATTTCTTGAACGAAACATCTTGACCATAGCTCCATGAAATACTTCTCACCTATATTTTTCATAGATGCGTGATTCTCTTCAGGTGAATGGAGGAGCCCATGTGCCATCCATAACTGAATCACGTCATTTGAAGATAATATGCGGTCTGGTAATTGAGCACAATGAAGAAAACAGGGCTTCAGGTGTGAGGGCATTTGATTATAGCATAATCTGAGTATGTGTAAAATACCGTCATTCTCTTCCTTTTGTGCCCACAACTTGTCCTTGATATTCTTCCACTCAGCTATTCTAGTTTTTGAAGATAGCAAGCTTCCCATACACTTTATTGCCAATGGAACTCCCTTGCATTTCTGCAGAATTTGGTCTTCTATTCCAGTGAATTCTTCATTGTTTACTTCTTGTCTATCTCTGAAGGCATATCTTTTGAATAACTTAGATGATTTATCCTCTGACAGCCTCTCCAGTTTGAAGACTGTTGAAACTTTCTGATTCTTATCGTCCGAATTCTGCGTCGATTGTTTCTCCGACTGTTTCTCAGACGCATAGACTATTCCTAGTCCTAGAGCACCTGCAGTCTCCTCACTTTGAGTGGTCACTAAGATTTTGCTGTTCTTGTTTCCCATGCCCAATAGTTCCATCAATGTGGATGAATCGTCTAAGTTTGTGGTCGAAAGGTCTTGAATGACGAGCAAAAAAGATGTACCCTTCAGAAGATGTTGAACCTTTAAATGCAATTGTTTCTTAGTCAAGTCATTACAAATTTCTTTACAGGCTACAACACTATATACCTCTTCGATCAATCTCTGTGTATCAAAACCTTCTTTCACACAAACCCAGAATCTTGAAAGATACTGTTCAACTACTTCTTTATCATTGTAAAGGAATTTGGCAAGTGTGCTCTTACCTATACCTGCTTCCCCAACTATGAGGAAGAACCCATGAATAGATTTGAAAGTTGTCAGAAGTTCAGCATACCGATCGCCATCATAAGTCATTGGAGCATCAGTTAAGGTGTACTGCAATTGCCAACTTGGTTTCATATGTCTTACTGAAACTTCAGTAGTGCTAAGGAAGGAGTGTGCTGTCTTCCTTCTTCCTATGGAATCTGGGTGCTTTTCAGTGAGATGAAATTCATACATTCTGGCTGCTAGTGTATCCAAATGATTGCGTAGTCTCATCATTTTACGAAACCGTATAAATTTATGTGCAGAAATTGGGTGAGAGCACGAGAAAGGGGCTTGTACCTTTTTTCCAGTGCCCTCTTGTTCAAAATCCCATTTGAATTCATCCATGGTGTCCTCAATTTGGTAAAAGGTGTTTTGAAGCTCCTTAAGCCACTTACGTAGATCATGATTCTGTTCTTGTTCTTGCTTCTCTTCAGCATCAAAAAGAATTGATTTAAGGCTCAACATGGTATACTCCATTGTTTGGAAGGTTGAGCAATTTTTTAGCCTACTCAAGATAGTTTCAGCGTGGTTGTAGATGAAATTAGCCATATTCTCATGGAAAATGTTTGTTCCTCCTTGCGATTTATTGGGTTGCCCTCTTACTCTTTGAGTCTGCCTGCCTGCCTTGTCTCAGGTGTCTACAGCAGATCTGATTAGTCTCGTGACGAAGATTGGTCTTTTCCGATCTTCCACTAAGAAAATCAGGGTATCGTCACGATAACTCAATTTGCCCGATAAACTACTCAGGACTCATGGTTTAGTAAGAGGGGAGATTTACTTTTGAATCCGGGATGAATTTCTATAAATGGAGATCGTTGATATATGCACCTAATCCGTGGATTCGTTGCATTTTCATGAAGCAAAATAGCTTCAAAACTTAACTCTTAGGGAAATGTATATTCTTCCCGTGCATCCTGAAGAATAGAATAGGAGCACTCAACTCTCGCCAGGTACTTCTCTTTAGGATTATGTATTTAAGGAGTTTTGCAACTGTTTGCTTTTTATTCTAAACAAGTGGAGCCCCCATTTCTTCAAATGAACAGAGAATTCTATTCTTGCTGTGTTCTAACCTATCTGGAATGATCCCCTTCTTTCTTAGATGTAATTCCAAACTCAACTCTTGGGGAAATGTATATTCTTCCCCTTTATATTAAAGAACTGTATAGGAGGAGGGGTCTTGGTATTCTTTAAGCTATTCCTTTACAGGTTCTTACAATTTCCCCTCTTACTTCAGAGTTATTTGGTAGAACTAGACCTTCTTTATTGAAAGGAATTAATATGAGCACCCAAAATCCTATGCTTAGAGTTTGATTATCATGATTTCCAATCATTTTAAGGCTAACCAAATCCTGTTTTTGATTGTTTTGTTTATCTCAATTAGATTTACTCCAAATTAATTGACAAGATTCAAAATTTAGATGAATTTTCTGACTATTTTGTGATATTTGAACGATTGGTTGTGTTTATGTTGTAGCCACAAAGCCATTAATAAATTTCGTGGATAACTTATGAATTGCGAGCTGATATGAACTTATGAGTGATAGAAGCATTATTATATATACTACAGGGTCGTAATTACACTGCATGCACTCGACTCTCATAAGAGTCTTTATTGTGGACACATATACTACACGCCATATACAATAATAATACTATGAACCACACCATCAAAGGATTGATGATGATTATTTATATATGTATTCTGATTCAGGGAAAGGCCTTCCTGTGGTTCAAGCCAATTGCCTGGGGGGACACTCTGCTGGAACCAGACCCGCTACCACTCCCAGACCCCGACCCCGACCCCGACCCAGAAGCTGAGCCCGAACCACTGCTCGATCCACTTCCTGAGCCTCCCCCACCGCCGCCGCCGCCACCACCATTGGGCTGCTGCACAGCCGCAAGGCTGATGCTGCTGCTTATTAAGAAGATGAGAAAGCAGAAGCGGAGGTAAACCATGGATGGAGAGGCCATGAGGGAATAAGGGAATAAGGCTGAAGGGGGAGTTTGTTGTTGATATTGGTATTTATAGAGTATTGGGAGTTTGTGGGTTTGGGGCGTCTGGCATTTGTTGA

mRNA sequence

CACCGTATTCCAATATTGGAAGCCATAACCCGGCGCCGCCCCTTTGACTTTTACAGATCCTACAATTTTGGCCGTTTCAACACCTGTAAACGCTTGTAACCTCCCTACATTGATGGTTATGGGGCAATTGATGATCTGCAGGTTTCTCAAAGTTTCGATCGATCCGTCAAGCCATTCAGGTAGGGATGCATTAGGTGGCACCATATCTCTTACATGGAAGGCTAGGGATTTTATTTCAGTGACTGGTTTGATGCGTGATTCTCTTCAGGTGAATGGAGGAGCCCATGTGCCATCCATAACTGAATCACGTCATTTGAAGATAATATGCGGTCTGGAATTTGGCAAGTGTGCTCTTACCTATACCTGCTTCCCCAACTATGAGGAAGAACCCATGAATAGATTTGAAAGTTGTCAGAAGTTCAGCATACCGATCGCCATCATAACATCAAAAAGAATTGATTTAAGGCTCAACATGGTGTCTACAGCAGATCTGATTAGTCTCGTGACGAAGATTGGTCTTTTCCGATCTTCCACTAAGAAAATCAGGGGAAAGGCCTTCCTGTGGTTCAAGCCAATTGCCTGGGGGGACACTCTGCTGGAACCAGACCCGCTACCACTCCCAGACCCCGACCCCGACCCCGACCCAGAAGCTGAGCCCGAACCACTGCTCGATCCACTTCCTGAGCCTCCCCCACCGCCGCCGCCGCCACCACCATTGGGCTGCTGCACAGCCGCAAGGCTGATGCTGCTGCTTATTAAGAAGATGAGAAAGCAGAAGCGGAGAGTATTGGGAGTTTGTGGGTTTGGGGCGTCTGGCATTTGTTGA

Coding sequence (CDS)

ATGGTTATGGGGCAATTGATGATCTGCAGGTTTCTCAAAGTTTCGATCGATCCGTCAAGCCATTCAGGTAGGGATGCATTAGGTGGCACCATATCTCTTACATGGAAGGCTAGGGATTTTATTTCAGTGACTGGTTTGATGCGTGATTCTCTTCAGGTGAATGGAGGAGCCCATGTGCCATCCATAACTGAATCACGTCATTTGAAGATAATATGCGGTCTGGAATTTGGCAAGTGTGCTCTTACCTATACCTGCTTCCCCAACTATGAGGAAGAACCCATGAATAGATTTGAAAGTTGTCAGAAGTTCAGCATACCGATCGCCATCATAACATCAAAAAGAATTGATTTAAGGCTCAACATGGTGTCTACAGCAGATCTGATTAGTCTCGTGACGAAGATTGGTCTTTTCCGATCTTCCACTAAGAAAATCAGGGGAAAGGCCTTCCTGTGGTTCAAGCCAATTGCCTGGGGGGACACTCTGCTGGAACCAGACCCGCTACCACTCCCAGACCCCGACCCCGACCCCGACCCAGAAGCTGAGCCCGAACCACTGCTCGATCCACTTCCTGAGCCTCCCCCACCGCCGCCGCCGCCACCACCATTGGGCTGCTGCACAGCCGCAAGGCTGATGCTGCTGCTTATTAAGAAGATGAGAAAGCAGAAGCGGAGAGTATTGGGAGTTTGTGGGTTTGGGGCGTCTGGCATTTGTTGA

Protein sequence

MVMGQLMICRFLKVSIDPSSHSGRDALGGTISLTWKARDFISVTGLMRDSLQVNGGAHVPSITESRHLKIICGLEFGKCALTYTCFPNYEEEPMNRFESCQKFSIPIAIITSKRIDLRLNMVSTADLISLVTKIGLFRSSTKKIRGKAFLWFKPIAWGDTLLEPDPLPLPDPDPDPDPEAEPEPLLDPLPEPPPPPPPPPPLGCCTAARLMLLLIKKMRKQKRRVLGVCGFGASGIC

Homology

[Close]

BLAST of CmoCh14G004740 vs. ExPASy TrEMBL
Match: E5GBX5 (Uncharacterized protein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 4.7e-12
Identity = 46/54 (85.19%), Postives = 50/54 (92.59%), Query Frame = 0


Query: 171 DPDPDPDPEAEPEPLLDPLPEPPPPPPPPPPLGCCTAARLMLLLIKKMRKQKRR 225
           DPDPDPDPEAEP PLLD LP+PPPPPPPPPPLG CTAARL LL+IKKM+KQK+R
Sbjct: 1   DPDPDPDPEAEPPPLLDALPDPPPPPPPPPPLGRCTAARL-LLIIKKMKKQKQR 53

[Close]

BLAST of CmoCh14G004740 vs. ExPASy TrEMBL
Match: A0A6J1D0H8 (protein CHUP1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016154 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 8.6e-06
Identity = 36/47 (76.60%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 155 IAWGDTLLEPDPLPLPDPDPDPDPEAEPEPLLDPLPEPPPPPPPPPP 202
           +AW D+ LEP P PL  PDPDP+PEAEPEPLLDP P PPPPPPPPPP
Sbjct: 1   MAWRDSPLEPHPPPL--PDPDPEPEAEPEPLLDPPPPPPPPPPPPPP 45

The following BLAST results are available for this feature:

BLAST of CmoCh14G004740 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G004740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
E5GBX5	4.7e-12	85.19	Uncharacterized protein (Fragment) OS=Cucumis melo subsp. melo OX=412675 PE=4 SV...	[more]
A0A6J1D0H8	8.6e-06	76.60	protein CHUP1, chloroplastic-like OS=Momordica charantia OX=3673 GN=LOC111016154...	[more]

BLAST of CmoCh14G004740 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 164..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 185..202
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 170..184

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G004740.1	CmoCh14G004740.1	mRNA