
CmoCh14G004320 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCAAGTACGTAATGAGTGTAGTAGCTTATTTGAGCATGCTTTATGTATGACCAATACGAGATGATGGTCTTTCTCTTCTACATCCAAGCTGGATCATCGTAGAATATAGACAAACCAACCAATAAATAGTTGTTTGTTCTCTCCTTTTGATTGATATTAGGTTGTTTCCAAGTTCAAACTATGAGATCGGTTGGAGAAGAGAACGAATCATTCTTTATAAGGGTATGGAAACTTCTCCTTAGTAATGAGACAAAATGGACTATAGCTATTAGCGGTGAACTTGAGCTGTTGCAAATGATACTAAAACTACACACTGGGTAGTGTGCCAACGGGATTGAATAGAAGTCGTTTATCTCGAGATCAATACCATTACTTTTTGAAGAAAAAAAAAAAAAAATCACACTTGTGATGAAGTAGCACATGGTTTAATTTTTTCTTACCTAATCAAAAGCTCACACTTTCTGGTTTTCTTTTTCCATCTTTGAATCTGAATCCTTTTTCGTCAAGAAACCATAACTACTACTTAAATTTTTACGTCATTTCCAGCTTGCATTGAGTAGAAGGCCGTATCGTTGAAGGTAACAAAAGGAGAATCAACGACTAGTTGCACACCGGGATAGCATATAACCCGAATAAGAAGAATCAACGACTAGTCGGATCCTGTGCTCTAAGATCCCAATCGGTTGGAGAGGGGAACGAAACATTCTTTACAAAGGGTGTGAAATTTAAAACCTTGAGGAGAAGTCTAAAAGCGGAAATCCAAAAAAGACAGTATCTACTAGCAGTGAGCTTGACCTATTACAAATGGTATCAGAGTTGCACGCCGAGAAGCGTGCCAATGAAAACGCTGGGTCCCTAAGGGAGGTGGATTGTGAGAGCTTCGCAAGCTAGACGGTGTGCCAGGTAGGACGCTGCCCCCAAGGATAGTGGATTGTGAGGGCTGTTACAAATATTACACCTAAAATACATTTTAGTCCTGACAGATATGATTTTGGTGATCGGTCGTACACTCTCGTATTAAAAATAGTAAATACCTATCTAAATAAAGAAGTTTGGAATAGAAATGTAAAAAAGAAGCCCTAAAGGCTGTGTTCGGTCCAGTTTGGAGCGCTGAACAAGGGCTCAGGTCTGCTATCACTTCAGCGCCAAACGTGTCTGATGACCATCACGAACATGGAGGATTTGAAGAAGAGGAAGCTGGAGGAGACCGTTGGCAACGGTGAATTTTCGTCGGTCGAACATTTGCGGTCTCTCCTCGAACCGCTTCCCAAGCCACAACTCGTCGATCTCCTTGCCAGACTGTGCGTCTCTTCTCCTTATTGATTAAACCACGCTTCCATTTGATCTTCTTTCTTCTTCTTGTTTGTCTTCATGAATTCTCGTAATGTTTTAGTTTATTAGTTCTTCTTCTTCTTTTTCTCACCTGGTTTTGTCTTTCTGTTTACTGCGAAACAATGTTATTGGATGAGATATGGAGTTTCAAAGAATTGGATAATCCGAGCCTTAACTCATTTATGCCTCTGTTGCCGATGTTCTGTTCTACGTTTTTGCGTTCTTAGTTTCCATTGTAGCTGAAGGTTGGGATCTTATTGTTTCGCAGATTATCATTGTATTTTTTTATAAAACACAATCTAAAGTTTAGTCAATTTAAAATTTATCTTTAATAAATTGCTTCTGCCAAAAAAAAAAAAAAAATGTTAAACTATCATGAAGGTTATTTCAAACCAAATTCAGATTTATCTTGGAGTATTTATCTAATACACTATTTAAAAAAGAAGACAAACTCACAAGTTCAAGAATTATAAAAAATGAATTTCAACTCAAAACAAATTTGTTCGAAATTTTTTTTTTGTCTTTATAGTTCTTGAATAGAAATTTTCTTTTGAAAGTAACTTCCATCACTAAGGACTATGGTAAGAATAAGATTTTTGGGTATTCCAATCAGAAGGGTGTTGCTTGAATTGTATGCTGTGTGATTGACATGGTGAATGTGTGTTTGTTTGCGTTGCATGTTGAGGCATAAAGAGGGTCCCAGTATCCTTCCATTGCAGAAGAAATAAAAAGTGTTGCCAGTGCAGATCCTGTCAATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACATTGTGTGCTGTGAGTGCAGTTGGTCGTTGCTTGTGTTTTGCCTGTCATGCTTGTGATTGTTCTCTAGGATATATGTTCTTAGTCCTGGAACATTAAATTTTGGGATCACTTTCTTTTTTAATAATTTTTTCTCCTAGGCTTCTATATCCTACAAAAAGGTGTTCTGTTGGTTTTCTTCCTAACAAGTAGTTGTAATTATTTTCATGTTCAGACGTTTAGCGTCCATGGCGAAATTGAAGAAGGAGCCGTTATCTATGACAAAACGACAGGGAAGTCTCGTGGATATGGTTTCATTACTTACAAGCATATGGAGTCAACTAAAGCTGCTTTAAAAGCACCTAGCAAAATTATTGAGGTAATCACTTACCCCTTCCAGATGTTGTGGAAATATTTTCTATTTGATCAGATGATGTTTTGGAGTTAAATGTGTGTGAAAATAGTTGGGATGGGATGAATAAGTTAACGTTTCTTATTTGGGTTAGGAATACAATGGATTATAAATGATCTTCTCTAGAGTTTATAATTTTTTTTGTTTGCTTTTTTATTCGTTTCGTGAAATAGCACCCTGACCCCACATCTTGTATCCTCAATCGAGTTTCATTTCGACCCCATCTTCTTCATAAAATGATAATTGACGTCTCATTCACTGAGTTATGTTCAAATTGGCAAAACCGGTAGTCTCTTAGGAATACCTACCTAAATGTTGTGATGTGAATCTTTGGGTGAGTATAATAACAAAAATGTCGCGATGTCTCTAAAGACTAGGCCTTGGGGAAGACACAAACTCTTAGAAAAATACAATATTTGGTCTCATCATTTCTTTGTTCGTAGGACGATAGCTGTTGGCTTATGGAGAAGTATTCTTTTTGGATTTTGACCACAATATGTAATGAATCTAATTTTACAAAGATTGAAACTTAATCAACTCCTATATATGAGCTGTATATCCTACTTGTAATAATTTTGAACTTGAACAAAATTTATGCCCTTAAAAGCAGATATTAAGGGTTGTTGATTGACAAGCCTATCTGCAAGGTAAGGATAGATAACTTGAACTTGTAATAAACACAACCAGGTCTTCGTTCCACATATTATAGCTGGTGGCTTACTAAGATATTTCTAAGAGAACTCAAATATTTGTATTTGATACATTCTTCTTAGCTTACTAAGATATTTCTAAGAGAACTCAAATATTTGTATTTGATACATTCTTCTTAATTTAGGGTCGCATGGCTGTCTGCAATCTGGCTTGTGAGGGTCTAAGTGGATCAAGTACAACTCCAGATTTAGCACAGAGGAAGCTATACATTGGTGGGTTATCACCAGATATTACAAGTGAAATGTTGCTGAATTTCTTTGGAAGGTATGGTGATATAGAAGAAGGTTCGGTTGCCTATGATAAAGATACAAATGAATCACGGTTAGTAACATTCTTCTCGCATTTCATTGGGACATTACTTTCTCGGTCGATGTCTATGATTTTTTTATCTTATTGGACCCCACTGCACTGCAGCTATTATATAATTTTCATTTTTTTGTGTGTAGAGGGTTCGGATTTGTTACATATACCACAGTCGAGGCTACAAAGAAGGCAATAGATGATCCAGACAAGACCTTTGGGGTGAGTGACTAATGAGCCTTGATAATAGCCTTTTGAAATAGCCGGTTTAATTTTTAGCATTATAGAAGATTCCAATCATTTAAATCCTCAGATATGCTGTAATTTATGTTTCAAGCGACAAGAAAAAAGGGAAAAGGCCAGAAGTAAGGGTAGTCCTAAGGGTAAGATTATTGCTTCCGGAGTTCTTAAGGGTCCTTTATCTCCTTTCCTTTTCTTACTTGTGGTGGATGATTATTGTGAGCAAGTATAGTTCTCATCACTTTGACTGAATTTTTGGTGGGTTTAAAGGCACCTTCAGAACCCGTGGAAAGAAATTTCTAATAAGCTTTTTTTTTTCCTGATCTAATTTAGTGATGTGGTGGGTGATGGGTAGGGTACTCTGTTTTTGGAGGATAGATGGGTGGGGGATCGCCCCCTTTGCAATGTCTTTCCTAATTTTTATCATTTATCTGTTATGAAAAATTGTTTTGTCGTTGACGTTTTGATTCATGAGGGAGATCATTCTTTTTTTCGTTTGTTCGATAGAGAAACGATGGGGATTATGACTCTCCTTTCTTTAGTGGGAGACTTCAATTTTAGGCAGGGGAGAAAGGATTGTTCGACTATGGAGTCTTCATCCTTCGAAGGGTTTCTCGTGTAAGATCGTATTTTCTTTATCGAGTGGATCATTCTTCTTTTAGGGAGTTTGTGTTATCAATTTTTTGGAAGGTGAAAATTCCAGAAAAGGCGAAGTTCTTTGTCTGGAAGAATTAACACTTCAGACAAACTTTCGAGAAAGTTATCGACCTTGGTTGGGTCGTTCTATTGCATTCTTTTGCAAGCATTTCTATAATGTGGTGAGTGTTTGCAGGGAAGGAACATAATTGTGAAGCTCGCCGATTCACACAGGAACAAGATGATGCAGGCACAAGTACCCCCAGCTATTCCTTCTATGCCATACCCAGTAGCAGCAGCTGGATATCCTCAACCTGGAAAACCACACGGCGGTGTTGCCCCTGTTGGCTATGCATATCCCCCCCAAGCTCTTGCATCATATCATGCTTCATATCCTAGTCTGACGTCCGCGCATGCTTCGTATGCGAGCCAACCCCAAATTCCACATCCCCATCAAGTGATAGGAAAGAAAGACGCTCCCGGACTCCACCTGATCACGCCTACTGGAATGGGAGGCTATCCATATTATATGGCGAAACAATAGATGTGATTTATGGGAGGTGAATTTCAAAACATGATAATATGTTAGCTTTGATTCTCATTCAATGGTTCATGGTTCACTGGTTTTCTGCAGGGATTTGGACATTGGCAATGGCCCTCTTGAAATTGGGTAATCTCTTCATCCTTGTGTAGCTTGTTGGAGTAATATTATTAGCATCGAGAAATAATGCATACTTATTCTTAGGATTAGAAGCAGTTGGTTCTGAGCATGAAACATATTGAACATATGACAGACAGAGTATTCTTGATCTTTCTGAATTGCATTTTACTCTCATTTCCTGTTTTGAATTTAGAAAACGGATCTCATAGTTACTGTAAGTATTAGATTAGATTAGATTAGATTATTTGTGTTCCATTAACAATTTTCTTCAAAGAAGTTCTTCCAAATTTTCTGTAATTGTTTAGGTTTTAGGTTTAAATATCATTTTCCTCTCGTTTTAATTTGTCTCTGTAATTTTAAATCTTTAGATTGAACTACTTTAGTTGAACTTTATCCACG ATGCAATTTGGAGCGCTGAACAAGGGCTCAGGTCTGCTATCACTTCAGCGCCAAACGTGTCTGATGACCATCACGAACATGGAGGATTTGAAGAAGAGGAAGCTGGAGGAGACCGTTGGCAACGGTGAATTTTCGTCGGTCGAACATTTGCGGTCTCTCCTCGAACCGCTTCCCAAGCCACAACTCGTCGATCTCCTTGCCAGACTAGGGTCCCAGTATCCTTCCATTGCAGAAGAAATAAAAAGTGTTGCCAGTGCAGATCCTGTCAATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACATTGTGTGCTACGTTTAGCGTCCATGGCGAAATTGAAGAAGGAGCCGTTATCTATGACAAAACGACAGGGAAGTCTCGTGGATATGGTTTCATTACTTACAAGCATATGGAGTCAACTAAAGCTGCTTTAAAAGCACCTAGCAAAATTATTGAGGGTCGCATGGCTGTCTGCAATCTGGCTTGTGAGGGTCTAAGTGGATCAAGTACAACTCCAGATTTAGCACAGAGGAAGCTATACATTGGTGGGTTATCACCAGATATTACAAGTGAAATGTTGCTGAATTTCTTTGGAAGGTATGGTGATATAGAAGAAGGTTCGGTTGCCTATGATAAAGATACAAATGAATCACGAGGGTTCGGATTTGTTACATATACCACAGTCGAGGCTACAAAGAAGGCAATAGATGATCCAGACAAGACCTTTGGGGGAAGGAACATAATTGTGAAGCTCGCCGATTCACACAGGAACAAGATGATGCAGGCACAAGTACCCCCAGCTATTCCTTCTATGCCATACCCAGTAGCAGCAGCTGGATATCCTCAACCTGGAAAACCACACGGCGGTGTTGCCCCTGTTGGCTATGCATATCCCCCCCAAGCTCTTGCATCATATCATGCTTCATATCCTAGTCTGACGAAAGAAAGACGCTCCCGGACTCCACCTGATCACGCCTACTGGAATGGGAGGCTATCCATATTATATGGCGAAACAATAGATGTGATTTATGGGAGGGATTTGGACATTGGCAATGGCCCTCTTGAAATTGGGTAATCTCTTCATCCTTGTGTAGCTTGTTGGAGTAATATTATTAGCATCGAGAAATAATGCATACTTATTCTTAGGATTAGAAGCAGTTGGTTCTGAGCATGAAACATATTGAACATATGACAGACAGAGTATTCTTGATCTTTCTGAATTGCATTTTACTCTCATTTCCTGTTTTGAATTTAGAAAACGGATCTCATAGTTACTGTAAGTATTAGATTAGATTAGATTAGATTATTTGTGTTCCATTAACAATTTTCTTCAAAGAAGTTCTTCCAAATTTTCTGTAATTGTTTAGGTTTTAGGTTTAAATATCATTTTCCTCTCGTTTTAATTTGTCTCTGTAATTTTAAATCTTTAGATTGAACTACTTTAGTTGAACTTTATCCACG ATGCAATTTGGAGCGCTGAACAAGGGCTCAGGTCTGCTATCACTTCAGCGCCAAACGTGTCTGATGACCATCACGAACATGGAGGATTTGAAGAAGAGGAAGCTGGAGGAGACCGTTGGCAACGGTGAATTTTCGTCGGTCGAACATTTGCGGTCTCTCCTCGAACCGCTTCCCAAGCCACAACTCGTCGATCTCCTTGCCAGACTAGGGTCCCAGTATCCTTCCATTGCAGAAGAAATAAAAAGTGTTGCCAGTGCAGATCCTGTCAATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCACTTCAGAAACATTGTGTGCTACGTTTAGCGTCCATGGCGAAATTGAAGAAGGAGCCGTTATCTATGACAAAACGACAGGGAAGTCTCGTGGATATGGTTTCATTACTTACAAGCATATGGAGTCAACTAAAGCTGCTTTAAAAGCACCTAGCAAAATTATTGAGGGTCGCATGGCTGTCTGCAATCTGGCTTGTGAGGGTCTAAGTGGATCAAGTACAACTCCAGATTTAGCACAGAGGAAGCTATACATTGGTGGGTTATCACCAGATATTACAAGTGAAATGTTGCTGAATTTCTTTGGAAGGTATGGTGATATAGAAGAAGGTTCGGTTGCCTATGATAAAGATACAAATGAATCACGAGGGTTCGGATTTGTTACATATACCACAGTCGAGGCTACAAAGAAGGCAATAGATGATCCAGACAAGACCTTTGGGGGAAGGAACATAATTGTGAAGCTCGCCGATTCACACAGGAACAAGATGATGCAGGCACAAGTACCCCCAGCTATTCCTTCTATGCCATACCCAGTAGCAGCAGCTGGATATCCTCAACCTGGAAAACCACACGGCGGTGTTGCCCCTGTTGGCTATGCATATCCCCCCCAAGCTCTTGCATCATATCATGCTTCATATCCTAGTCTGACGAAAGAAAGACGCTCCCGGACTCCACCTGATCACGCCTACTGGAATGGGAGGCTATCCATATTATATGGCGAAACAATAGATGTGATTTATGGGAGGGATTTGGACATTGGCAATGGCCCTCTTGAAATTGGGTAA MQFGALNKGSGLLSLQRQTCLMTITNMEDLKKRKLEETVGNGEFSSVEHLRSLLEPLPKPQLVDLLARLGSQYPSIAEEIKSVASADPVNRKLFVRGLAWNTTSETLCATFSVHGEIEEGAVIYDKTTGKSRGYGFITYKHMESTKAALKAPSKIIEGRMAVCNLACEGLSGSSTTPDLAQRKLYIGGLSPDITSEMLLNFFGRYGDIEEGSVAYDKDTNESRGFGFVTYTTVEATKKAIDDPDKTFGGRNIIVKLADSHRNKMMQAQVPPAIPSMPYPVAAAGYPQPGKPHGGVAPVGYAYPPQALASYHASYPSLTKERRSRTPPDHAYWNGRLSILYGETIDVIYGRDLDIGNGPLEIG Homology
BLAST of CmoCh14G004320 vs. ExPASy Swiss-Prot
Match: Q9LKA4 (UBP1-associated protein 2C OS=Arabidopsis thaliana OX=3702 GN=UBA2C PE=2 SV=1) HSP 1 Score: 186.4 bits (472), Expect = 5.6e-46 Identity = 101/242 (41.74%), Postives = 146/242 (60.33%), Query Frame = 0
BLAST of CmoCh14G004320 vs. ExPASy Swiss-Prot
Match: O80678 (UBP1-associated protein 2B OS=Arabidopsis thaliana OX=3702 GN=UBA2B PE=2 SV=1) HSP 1 Score: 171.8 bits (434), Expect = 1.4e-41 Identity = 91/237 (38.40%), Postives = 133/237 (56.12%), Query Frame = 0
BLAST of CmoCh14G004320 vs. ExPASy Swiss-Prot
Match: Q9LES2 (UBP1-associated protein 2A OS=Arabidopsis thaliana OX=3702 GN=UBA2A PE=1 SV=1) HSP 1 Score: 170.6 bits (431), Expect = 3.2e-41 Identity = 85/224 (37.95%), Postives = 125/224 (55.80%), Query Frame = 0
BLAST of CmoCh14G004320 vs. ExPASy Swiss-Prot
Match: Q9LJ04 (RNA-binding protein P OS=Oryza sativa subsp. japonica OX=39947 GN=RBP-P PE=1 SV=1) HSP 1 Score: 162.2 bits (409), Expect = 1.1e-38 Identity = 88/248 (35.48%), Postives = 130/248 (52.42%), Query Frame = 0
BLAST of CmoCh14G004320 vs. ExPASy Swiss-Prot
Match: Q9SHZ6 (UBP1-associated proteins 1A OS=Arabidopsis thaliana OX=3702 GN=UBA1A PE=1 SV=2) HSP 1 Score: 109.4 bits (272), Expect = 8.7e-23 Identity = 59/131 (45.04%), Postives = 73/131 (55.73%), Query Frame = 0
BLAST of CmoCh14G004320 vs. ExPASy TrEMBL
Match: A0A6J1F6L7 (UBP1-associated protein 2C-like OS=Cucurbita moschata OX=3662 GN=LOC111441349 PE=4 SV=1) HSP 1 Score: 593.6 bits (1529), Expect = 5.6e-166 Identity = 298/302 (98.68%), Postives = 298/302 (98.68%), Query Frame = 0
BLAST of CmoCh14G004320 vs. ExPASy TrEMBL
Match: A0A6J1J4I3 (UBP1-associated protein 2C-like OS=Cucurbita maxima OX=3661 GN=LOC111481690 PE=4 SV=1) HSP 1 Score: 578.9 bits (1491), Expect = 1.4e-161 Identity = 291/297 (97.98%), Postives = 291/297 (97.98%), Query Frame = 0
BLAST of CmoCh14G004320 vs. ExPASy TrEMBL
Match: A0A5A7TKB5 (UBP1-associated protein 2C-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005530 PE=4 SV=1) HSP 1 Score: 552.4 bits (1422), Expect = 1.4e-153 Identity = 283/297 (95.29%), Postives = 284/297 (95.62%), Query Frame = 0
BLAST of CmoCh14G004320 vs. ExPASy TrEMBL
Match: A0A1S3B7X8 (UBP1-associated protein 2C-like OS=Cucumis melo OX=3656 GN=LOC103486777 PE=4 SV=1) HSP 1 Score: 552.4 bits (1422), Expect = 1.4e-153 Identity = 283/297 (95.29%), Postives = 284/297 (95.62%), Query Frame = 0
BLAST of CmoCh14G004320 vs. ExPASy TrEMBL
Match: A0A0A0LEH0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G809410 PE=4 SV=1) HSP 1 Score: 546.2 bits (1406), Expect = 1.0e-151 Identity = 279/297 (93.94%), Postives = 282/297 (94.95%), Query Frame = 0
BLAST of CmoCh14G004320 vs. TAIR 10
Match: AT3G15010.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 186.4 bits (472), Expect = 4.0e-47 Identity = 101/242 (41.74%), Postives = 146/242 (60.33%), Query Frame = 0
BLAST of CmoCh14G004320 vs. TAIR 10
Match: AT3G15010.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 186.4 bits (472), Expect = 4.0e-47 Identity = 101/242 (41.74%), Postives = 146/242 (60.33%), Query Frame = 0
BLAST of CmoCh14G004320 vs. TAIR 10
Match: AT2G41060.1 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 171.8 bits (434), Expect = 1.0e-42 Identity = 91/237 (38.40%), Postives = 133/237 (56.12%), Query Frame = 0
BLAST of CmoCh14G004320 vs. TAIR 10
Match: AT2G41060.2 (RNA-binding (RRM/RBD/RNP motifs) family protein ) HSP 1 Score: 171.8 bits (434), Expect = 1.0e-42 Identity = 91/237 (38.40%), Postives = 133/237 (56.12%), Query Frame = 0
BLAST of CmoCh14G004320 vs. TAIR 10
Match: AT3G56860.3 (UBP1-associated protein 2A ) HSP 1 Score: 170.6 bits (431), Expect = 2.3e-42 Identity = 85/224 (37.95%), Postives = 125/224 (55.80%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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