CmoCh14G003810 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G003810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionABC transporter G family member 6
LocationCmo_Chr14: 1765189 .. 1769718 (+)
RNA-Seq ExpressionCmoCh14G003810
SyntenyCmoCh14G003810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGGAAGACAGTGACCATGGTGAGGAAGAAAGGAGCAGCACTAAGCCTTAGGCCTGCCATGAAGTAGACAACGAGAAGGAAAAGTATAGGCAACAAGAGATCAAGAGGAAGATCACTAGTGGTTCTTGCCAAAAAGTAAGCACTCAATCTATACATATCAGCTGCTCTTTCTTTGCTCAGCATTGCTCTTTCTTGAGGAAATGTGAATATTGCTGTGAACACAGGGAAGAACCCCCAGAACACTGCTATGAAGAACAATAATCCTGCCTACGAAATGTAATTTTATCTTATTACATTCATGAACAGAAAATCAAAGCTTAATTTCAAGCTTCAAAGTTTGTACAACAATGGAGGAGTTGAATTACCTGATCTTGCAAGCCTTTCGGAGTGCTGCTATCCGAATGCCACCACAGTAATCCTAAAATTATGGCGGTGGCAAGAACTTGAGTGATTCTCAGCCAGCTGAAGTATTCATGACGTCTTTCTTTGATTCCTCTCCGGAACAGAATCGAGTATTGTTCCCACCAGCTCGCTCCCCATTGCCTTTTCGAATATGTTACCTTCGATTTCAGCTCTTCGTCGAGCGTCAGAGGTACCAACATCTTCCTCTTTTCTGTTTCTGCAATTCTCGTCTCGTAAGCCTCCACCAGATACTGCAAAGATTATTGTATTCAAATCAATCCATCGTATTAAAATCAAAGCTAAAGAAGTCGAGATTAAACATACCTCTTGCACAAGAACTGGTAAAGGCTTATCCTGTGTACTGTCAGCCTCAGAATTCTCTATTTGCACCTTATCCTCTAGCTCTGATGGAACAGACACATCATTCAGGTTACCATTTGCAAGATCCAGCAAGAACTCAGCAGGATTCATTGCAATTAGTGGGGAACATCCTATAGATGAGAAATAGTTTATTGCTTCAGCTGCTTTGCCATAATAGATCAAGCTTCCCTTTCCAAGAAGAATTAGCTTGTCAAATTTATGAAATAGTCTGCTTGATGGTTGATGAATCGTTGTCACCACGGTCTTCCCCGCCTGCCATTGAAGAAAAACTTAATCATTCTATGATGAAGCTAATCAGCAAAACAGAAGAAGAACGTGCATTTTATGATATATACTTCAGCTATCTCATGTAAAATCTGAACAATTTTCAATGCAGTTGTAGAATCCAAGCCCGAGGTCGGTTCGTCAAGAAACAGCAGTGACGGATTGATTAGAATCTCATTGCCTATAGAGACTCGACGCCTTTCTCCACCTGAAACTCCACGGACAAAGGAGCCACCAATCATTGTATCCTGGCACCTGCAGAGGCTATATCGGTGAGCGCCTAATCTAGAAGGATGTATATCTTATGCTTCCATTAGAAAAAGCTGCAAATCCTTACCTTTCAAGGCCCAGCTCATATATGACATCGACCGCACGCTTTTCCTTCTGCTCTTTTGTCAATGTTTTTGGCAGTCGAAGCAAAGCTGCATATCTCAATGTTTCTTTCACCGTCAAGTGGGGAAACAGAACGTCCTCCTGCATCACGAATCCTACCCTGTAATGCCATTTTATTTTCTTAATTACCGTTCTACATCAGTATTTTCTAATTGTATCATGAACTCTGACTAGAAATCTTGCCTGCTTTTCAGGAACTTATTGTATGGCTGATCATTGTACGTAATCGAACCACCAACTGTAGACCGTATGAGCCGTCCTCCAAGCAGATTGAGCAATGTTGTCTTGCCACTTCCTGAAGGTCCCATTAAGGCCAGAACTTCACCAGGGTTTACTAAACCGGTAATACCATTCAAAATCTCCTTCTCCACATTTGTCCGCAATCCTTTTATGATTACTTTATAAGTAACATCCGTGAACTGCAAAATATTTGATCCAGACAATAGGATGAGTTCAGTAAAAGTTAGAGATGGCTATGTTTTCCTAAAGAAATGGAAGTAGGTCCGTAAGCGTTGATTAGCTTCTTCGAGTCTTAAACAACCTGATTCTTTTGACGAGCATGAACTAAATATTTAAAAAAATGGGCTAATCTAAGATTACAAGAGGACAATTATCCTTTTGAAGTTTTTTAGTTATGTTTCTGCTGCTTTTTATGTTCTCTAAGTTAGGTGGAAAGATGGGATGAGTCTTGTACATGAATTATCATATAAAATGAAACCTCGTACAAGACTGAACCTGACCATGCTATAATTTGCATGCTAGCTTAGCCATGTTCTATGGGGGTTGTGCTTTTATCTCTACATCAATCTTCCTGTCTTTTGCCTGTCCAAATAGATAGACATAAGTTCATTTGCTATCAACAAAACAAACACATACAATTCTGAAAACATTCTTTGTTTTTTTGTCTTTTTGTTGTTTTTTTTTTATTATCAAAGATTTAGGTGGCCATGTTTTGTGGGAGAAATCACTGTATTTCAATGATGAAAGAACACTTTATTTACCTTGAGCTGAATGGGCATGGTTGGTTCTGTTTGAAATTTGGTCTTGCCTGTTCCTGCTTCTACATCCTCTGCTGTTATATTATATGCATATAGATGTTAAACGGTTGAATTGGGATTTTACCCCAAGCTACTTGATTGATTCTTGAAAATATACTGATAACTTGCAAAATACGAAAATTCAAACGAACACCCCCATGTAGTTTGATGAACTCGGACCTCTCCCTTCCGAGTTAACTCGAGCTTGATTCACTCTATTTATAACCAATTCCTTAATTAGTGACTAACATACACTTAGTGCCTTAATGACATTTTTTGGTAGCTAATAATGGACTGAAAGCAGTCGGGAAGAGTAAAAAATGTCAACTAGATATACAGGGCAGGAGTCAAAGGTAGGTAGGGAATTTGAGCCTATAAATATGAAATTGAAGTCTTCAAGGACTTGACTTTTCCATTAAATAACACAAAACATATCTAAATTTGTGGGCCATGGGTCACTCTGCTAGTTTGATTCCAAGTTCCTACTAATAGCCTTTTCTTTTTCAAGTTTTCGTGAGATCTCACGTCGGTTGGAGAGGGGAACGAAATATTCTTTATAAGGGTGTGAAAGCCTCTACCTAGCTGAAACGTTTTAAAAACCTTGAGGGGGAAACCCAAAGAGGACAAGAGGTAGTTTTGGACTGTTATAAATTGTATCAAAGCCAGACACTGGGCGATGTGCCAGCGAGGACACTTAACCCCAAAGGGGTGGACACCGAGCGGTGTGTCAGCGAGGACGCTGGACCCTGAATGAGGATGAATTATGAGATCCCACATCGAGGAAAACGAAACATTTTTTATAAGGGTGTGGAAAACGTACAGGGAAAAACTCCAAATTTGTACTTACAGTACTTGAATTCGGAGGCGGGTTATTAACAATAGAGCCAAAATATAAAACAATAGTAATTTATTTTATTCTGAGTTTAAGTATTATGAACATAAATTGGTATGACTAGAGAGAGAGAGAGAGAGGCAGAAGGTCAGACAGACAACCACAAGATTTGAGAGCTTTTATTGCTACAACCATTTTTAGTTTTGCCATTGTAAGGGAAACCATGACACTTTCTCTTTATCAAACAAAAAGGGGACCAGAAAAAAATGAGTATAGGTTTCTAGCGAACTCTTCCGAATGACTCATACCCGAACGCTCTCTCATCTTCAACTCTTTCTGCCTTAACTCAACACATTGTGTGGACCATATCAAAAAAGTTGGACGAAAACACGAACATGACAAGAAAGTAGATGACGATGAACACGACGACGACGAAAAATCTTCAAAATTAGCAAAACATAAATTAAGAACGACTTACGTATATCTTCATCACTGAATGGCTTAAAATCTGCAATTTCATCAGGTGGCAAAGTGAAGCCATTGAAGGAGAATGACAAACCCAAGCTAGCACTTGAAGCTCTACTCAAAGCTGCACCACTGCCCAAATCATCCAAATCCAGCTTCAGCTGTGCACTCCTGGACTTCCTGATGTGTGTATTTCGAGCACCGCTGCCACTGCCACGCCCTGGTGAAGGAGCTGTCAACGTCTGCCTACTCGACTTCCTCGAGAGGGTTGTGCTGCCACTCTCCCCCACCACCCCACCGTTCACCTCGCTGCTCGACGTCGGAGACTTGAATGCTGCTGCCACCTTCTCCAAAAGTTGATCGGATTTCGTCCTCGCTAGAGCTAATGAACTCGTTGTCTTCTCCATGTCGCCTCCAACCTTCTTTCTTCCTAGTGGTGACATAAAAACATTGGTTTGACATTCATAATTGTGGAAGAAGATTCATTTAGTTCATATTGACCATACCTTTTTTGTGATGTTGAAGGAGAGTGGAGATTCAGAAGTGAAGAACTTATAGAGAGAGAAAGAGTTGGCTCAATCTATTGCACCTTCAATGGTACACATTCACTTCTTATATAAACAGCATTAAGAGGAAGAAACAGTTCATTTTTCACTACCCAAAACACCCTTATGTTATATCCCATATTACAAATTTGCCCTATATCCCATATTTCTGCCCATGATATTAATAGATTTTTAGGAGGAAACAC

mRNA sequence

ATGGAGAGGAAGACAGTGACCATGGTGAGGAAGAAAGGAGCAGCACTAAGCCTTAGGCCTGCCATGAAAAAATCAAAGCTTAATTTCAAGCTTCAAAGTTTGTACAACAATGGAGGAGTTGAATTACCTGATCTTGCAAGCCTTTCGGAGTGCTGCTATCCGAATGCCACCACACTCTTCGTCGAGCGTCAGAGGTACCAACATCTTCCTCTTTTCTGTTTCTGCAATTCTCGTCTCGTAAGCCTCCACCAGATACTGCAAAGATTATTGTATTCAAATCAATCCATCGTATTAAAATCAAAGCTAAAGAAGTCGAGATTAAACATACCTCTTGCACAAGAACTGGTAAAGGCTTATCCTGTGTACTGTCAGCCTCAGAATTCTCTATTTGCACCTTATCCTCTAGCTCTGATGGAACAGACACATCATTCAGTCTGCTTGATGGTTGATGAATCGTTGTCACCACGGTCTTCCCCGCCTGCCATTGAAGAAAAACTTAATCATTCTATGATGAAGCTAATCAGCAAAACAGAAGAAGAACAATCCAAGCCCGAGGTCGGTTCGTCAAGAAACAGCAGTGACGGATTGATTAGAATCTCATTGCCTATAGAGACTCGACGCCTTTCTCCACCTGAAACTCCACGGACAAAGGAGCCACCAATCATTGTATCCTGGCACCTGCAGAGGCTATATCGTCGAAGCAAAGCTGCATATCTCAATGTTTCTTTCACCGTCAAGTGGGGAAACAGAACGTCCTCCTGCATCACGAATCCTACCCTATTGAGCAATGTTGTCTTGCCACTTCCTGAAGGTCCCATTAAGGCCAGAACTTCACCAGGGTTTACTAAACCGGTGGCCATGTTTTGTGGGAGAAATCACTGTATTTCAATGATGAAAGAACACTTTATTTACCTTGAGCTGAATGGGCATGGTGGCAAAGTGAAGCCATTGAAGGAGAATGACAAACCCAAGCTAGCACTTGAAGCTCTACTCAAAGCTGCACCACTGCCCAAATCATCCAAATCCAGCTTCAGCTGTGCACTCCTGGACTTCCTGATGTGTGTATTTCGAGCACCGCTGCCACTGCCACGCCCTGGTGAAGGAGCTGTCAACGTCTGCCTACTCGACTTCCTCGAGAGGGTTGTGCTGCCACTCTCCCCCACCACCCCACCGTTCACCTCGCTGCTCGACGTCGGAGACTTGAATGCTGCTGCCACCTTCTCCAAAAGTTGATCGGATTTCGTCCTCGCTAGAGCTAATGAACTCGTTGTCTTCTCCATGTCGCCTCCAACCTTCTTTCTTCCTAGTGGTGACATAAAAACATTGGTTTGACATTCATAATTGTGGAAGAAGATTCATTTAGTTCATATTGACCATACCTTTTTTGTGATGTTGAAGGAGAGTGGAGATTCAGAAGTGAAGAACTTATAGAGAGAGAAAGAGTTGGCTCAATCTATTGCACCTTCAATGGTACACATTCACTTCTTATATAAACAGCATTAAGAGGAAGAAACAGTTCATTTTTCACTACCCAAAACACCCTTATGTTATATCCCATATTACAAATTTGCCCTATATCCCATATTTCTGCCCATGATATTAATAGATTTTTAGGAGGAAACAC

Coding sequence (CDS)

ATGGAGAGGAAGACAGTGACCATGGTGAGGAAGAAAGGAGCAGCACTAAGCCTTAGGCCTGCCATGAAAAAATCAAAGCTTAATTTCAAGCTTCAAAGTTTGTACAACAATGGAGGAGTTGAATTACCTGATCTTGCAAGCCTTTCGGAGTGCTGCTATCCGAATGCCACCACACTCTTCGTCGAGCGTCAGAGGTACCAACATCTTCCTCTTTTCTGTTTCTGCAATTCTCGTCTCGTAAGCCTCCACCAGATACTGCAAAGATTATTGTATTCAAATCAATCCATCGTATTAAAATCAAAGCTAAAGAAGTCGAGATTAAACATACCTCTTGCACAAGAACTGGTAAAGGCTTATCCTGTGTACTGTCAGCCTCAGAATTCTCTATTTGCACCTTATCCTCTAGCTCTGATGGAACAGACACATCATTCAGTCTGCTTGATGGTTGATGAATCGTTGTCACCACGGTCTTCCCCGCCTGCCATTGAAGAAAAACTTAATCATTCTATGATGAAGCTAATCAGCAAAACAGAAGAAGAACAATCCAAGCCCGAGGTCGGTTCGTCAAGAAACAGCAGTGACGGATTGATTAGAATCTCATTGCCTATAGAGACTCGACGCCTTTCTCCACCTGAAACTCCACGGACAAAGGAGCCACCAATCATTGTATCCTGGCACCTGCAGAGGCTATATCGTCGAAGCAAAGCTGCATATCTCAATGTTTCTTTCACCGTCAAGTGGGGAAACAGAACGTCCTCCTGCATCACGAATCCTACCCTATTGAGCAATGTTGTCTTGCCACTTCCTGAAGGTCCCATTAAGGCCAGAACTTCACCAGGGTTTACTAAACCGGTGGCCATGTTTTGTGGGAGAAATCACTGTATTTCAATGATGAAAGAACACTTTATTTACCTTGAGCTGAATGGGCATGGTGGCAAAGTGAAGCCATTGAAGGAGAATGACAAACCCAAGCTAGCACTTGAAGCTCTACTCAAAGCTGCACCACTGCCCAAATCATCCAAATCCAGCTTCAGCTGTGCACTCCTGGACTTCCTGATGTGTGTATTTCGAGCACCGCTGCCACTGCCACGCCCTGGTGAAGGAGCTGTCAACGTCTGCCTACTCGACTTCCTCGAGAGGGTTGTGCTGCCACTCTCCCCCACCACCCCACCGTTCACCTCGCTGCTCGACGTCGGAGACTTGAATGCTGCTGCCACCTTCTCCAAAAGTTGA

Protein sequence

MERKTVTMVRKKGAALSLRPAMKKSKLNFKLQSLYNNGGVELPDLASLSECCYPNATTLFVERQRYQHLPLFCFCNSRLVSLHQILQRLLYSNQSIVLKSKLKKSRLNIPLAQELVKAYPVYCQPQNSLFAPYPLALMEQTHHSVCLMVDESLSPRSSPPAIEEKLNHSMMKLISKTEEEQSKPEVGSSRNSSDGLIRISLPIETRRLSPPETPRTKEPPIIVSWHLQRLYRRSKAAYLNVSFTVKWGNRTSSCITNPTLLSNVVLPLPEGPIKARTSPGFTKPVAMFCGRNHCISMMKEHFIYLELNGHGGKVKPLKENDKPKLALEALLKAAPLPKSSKSSFSCALLDFLMCVFRAPLPLPRPGEGAVNVCLLDFLERVVLPLSPTTPPFTSLLDVGDLNAAATFSKS
Homology
[Close]
BLAST of CmoCh14G003810 vs. ExPASy TrEMBL
Match: A0A4S4EWA0 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_001012 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-15
Identity = 59/98 (60.20%), Postives = 68/98 (69.39%), Query Frame = 0 

Query: 311 GGKVKPLKENDKPKLALEALLKAAPLPKSSKSSFSCALLDFLMCVFRAPLPLPRPGEGAV 370
           GG VKP+KE + PKLALEA L+AAPL  SS+SSF  AL+ FLMCVF   L L  PGE AV
Sbjct: 15  GGMVKPVKEKENPKLALEAQLRAAPLLTSSRSSFIWALIVFLMCVFLL-LLLVCPGEAAV 74

Query: 371 NVCLLDFLERVVLPLSPTTPPFTSLLDVGDLNAAATFS 409
           N  LLDFL+RV+L  S   PP T+ LD+GD   A T S
Sbjct: 75  NNVLLDFLDRVLLLAS--APP-TASLDIGDFIVAITVS 108

[Close]
BLAST of CmoCh14G003810 vs. ExPASy TrEMBL
Match: A0A0P0Y0C8 (Os11g0177750 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0177750 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.0e-11
Identity = 57/154 (37.01%), Postives = 68/154 (44.16%), Query Frame = 0 

Query: 181 QSKPEVGSSRNSSDGLIRISLPIETRRLSPPETPRTKEPPIIVSWH-------------- 240
           +S+PEVGSSR    G    S P+ TR  SPP+TPRT   P +VS H              
Sbjct: 23  ESRPEVGSSRTRRLGFTSSSCPMLTRFRSPPDTPRTNALPTMVSAHGASPSSAITASAAA 82

Query: 241 -----LQRLYRRSKAAYLNVSFTVKWGNRTSSCITNPT---------------------- 289
                 +   RRS A   +VS TV+WG  TSSC TNP                       
Sbjct: 83  ALAAAGEEAGRRSMAQKRSVSRTVRWGWSTSSCATNPVRRCTARHGARPPASTVPAWRPA 142

[Close]
BLAST of CmoCh14G003810 vs. ExPASy TrEMBL
Match: A0A4S8K171 (Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb08t04200 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.2e-07
Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 0 

Query: 311 GGKVKPLKENDKPKLALEALLKAAPLPKSSKSSFSCALLDFLMCVFRAPLPLPRPGE-GA 370
           GG VKP+ E +KP+LALEALLKAAPL  SSKSSFSC L DFL+       P   PGE   
Sbjct: 65  GGAVKPVNEKEKPRLALEALLKAAPLLTSSKSSFSCPLRDFLLW-----CPTFLPGEVPT 124

Query: 371 VNVCLLDFLERVVLP 385
           V    LDFL+++  P
Sbjct: 125 VFFPKLDFLDKLGSP 134

[Close]
BLAST of CmoCh14G003810 vs. ExPASy TrEMBL
Match: A0A6P5GI60 (uncharacterized protein LOC109722227 OS=Ananas comosus OX=4615 GN=LOC109722227 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-07
Identity = 46/118 (38.98%), Postives = 59/118 (50.00%), Query Frame = 0 

Query: 181 QSKPEVGSSRNSSDGLIRISLPIETRRLSPPETPRTKEPPIIV-------SWHLQRLYR- 240
           +S PEVGSSR SS G   IS P++TRR SPP+TPR    P++V       SW ++   R 
Sbjct: 6   ESSPEVGSSRKSSTGSWTISAPMDTRRRSPPDTPRWDSSPMMVDAAGRSPSWSIRARTRA 65

Query: 241 -----------RSKAAYLNVSFTVKWGNRTSSCITNPTLLSNVVLPLPEGPIKARTSP 280
                      R+ AA ++VS TV  G R SSCIT    +     PL   P +    P
Sbjct: 66  RFFSRGSDRGSRNSAAKVSVSSTVSMGKRRSSCITYAE-MDRRSRPLTRSPFRVTDPP 122

[Close]
BLAST of CmoCh14G003810 vs. ExPASy TrEMBL
Match: A0A0P0WZ00 (Os06g0607750 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0607750 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.1e-07
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 0 

Query: 181 QSKPEVGSSRNSSDGLIRISLPIETRRLSPPETPRTKEPPIIVSWHLQRL 231
           +S+PEVGSSR+SSDG  RIS P+  R LSPP+TPRT  PPI+V  HLQ L
Sbjct: 50  ESRPEVGSSRSSSDGSTRISYPMLVRFLSPPDTPRTNAPPILVCRHLQNL 99

The following BLAST results are available for this feature:
BLAST of CmoCh14G003810 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh14G003810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4S4EWA02.1e-1560.20Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0010... [more]
A0A0P0Y0C89.0e-1137.01Os11g0177750 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0177750 PE... [more]
A0A4S8K1711.2e-0756.00Uncharacterized protein OS=Musa balbisiana OX=52838 GN=C4D60_Mb08t04200 PE=4 SV=... [more]
A0A6P5GI602.1e-0738.98uncharacterized protein LOC109722227 OS=Ananas comosus OX=4615 GN=LOC109722227 P... [more]
A0A0P0WZ002.1e-0766.00Os06g0607750 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0607750 PE... [more]
BLAST of CmoCh14G003810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G003810.1CmoCh14G003810.1mRNA