CmoCh14G003340 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G003340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptionubiquitin-conjugating enzyme E2 variant 1D
LocationCmo_Chr14: 1536619 .. 1539252 (+)
RNA-Seq ExpressionCmoCh14G003340
SyntenyCmoCh14G003340
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAGTGGAAAACGGAACCATCTGGGAAGATGAATACTTGTCCTGCACTAATAATTATGAGGTGTGGGAATGTGCGATGGTACAACAAGGGGTGGTTGAAATCAAATTGGAACTCGCCAAACCTAAATTTGAGCGGTAAGTAGTCAAGATTCAAGGGTCTAAGACTAAGACTAAGGTGTCTGAAGGGAGTTGGACCTTGGTGGAAGCTATAGATGTAACCCGGTGCTTATGATGTATGGTTGGAGTTTGAACATTTATGTAATTTAGTACTCGATTTTTTGAGTTTCCAGCCATGTCTAGGATTTTCCAGATTGTTACTATCAATCTCAGATTCTTGTCAAGGTAGGTCAGTGCTAAATTGCAAAACAATTTTGATGTTCGCTGTGTTCCAAGATAGACACGACCCAGGTGGTGTTGGATTTTCACATATTATGATTGATTTGCTAAATCCTCCTCGTGCTTATGTGGTACTCATTTGGAGCCCCCGTACAGAATTGTTTGATGGAAGTTGGAAAGATCCCTTTTTTTTTGTTACACCATGGAGTAAGCTACTTAAAGAGCAATTGCATCCTTAAAATTTGTGGCTTATTTTGTTGGGGTGTTAATTTTTGGCATATGCTGAAATAAATGGCAATAGTTTGGTTGAATGAGGGCAGTTAAATGGGAATATTAGCATACTCTTTGCTAGGTCATGGTGATTTCTAGGGAGGCAAGTAATATTAACTGTTATATGTTGGCATCTGGGTGTAGTCGATATATGGAATAGTTTAAGTTTATCCGCATGATTTGAGAGATTCGCTCATAGGAAGTGGTTATAAAAATAAATGGAGAGGAAGCCAGATGGGCAGTGCTGATAATGAGTTCTCCAAATAGCTTGGAATTGGGAGAATAAGAGGAAAATTCTCAAATTTCATCCTTCTTTTTTTTCTATCTTTCCTTCATTCTAGTACGAATATCAATTTGGTTCATCAATGTGATGGCATATGAAGCTTTTGATACAGAAGCACCATAATGAACATAAGAGAAATGTCTGACAGGACATTCTTGAATAATTTAGTACAATTATCAATATGATTATACTTCTCTCTGAATAAATTGAATTGGTGTGGAGTGATTGTAAACCAGTCGGTTGGGTCCACTATTTTTCTATGTTGCTCTTTGTGAGGGCAAGTCGATTAAATAATTTGTGCATTGCAGATTGTAAAGTTGTGTGATGTAGATGTCTCGCCATTGTCAAAACTTAAGCATCTTCTAAAGTGTTTGCTTTCTATCACAGTTCCTAGGAACTTCCGGCTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGTGATGGTACTGTGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGTTCATGGACTGGCACCATTATTGGTCCACACAATGTAATGGCTTCTGCCCTTCTTTTCAGGAATTTTAGTTCATTGCCTTGCTCGTGAAGAAAATTTGAAAATTTATAATTCGTACTTACCACCAAATATATATATAATTCATCAAATATTATTCATTGCTATAGGCACTATTCCTGCTCTTTTCCAATTGTAATTAGCTAACATGTCTTCTTGAATTTTGGAGGAAGTTCTTTTTTTTTTTTTTTTTTTTTCAAAGCTTTGTATCAACAACATGAGGGGGCAGAGTCTGTAAATGGTTGGTATGATAAATGCTCTCAGGAGTTTTAAGCAGAAAATTGGCGGTCTACCTTATTTTATAATTGCTATTTTATGGCGATACGTATGGTGCAGTAAAAATTCATCATGCTTCTTTTTTTCTTGCAGACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTTTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGTGTTCGTTTTCATTCAAGAGTCAACATGACATGCGTGAACCATGAAACTGGAGTGGTATCTTTGTTTTTATTCACATGGTTGACAATATGAATCTCTCGGTATTTTTTTTATTGAACTAAAAGTTGATATTTGAAAGAAAGACCAAAAGATAAGTGTAATATGAATATATAAATTGTACATTAAACTTGTGTTTTCAGAATTTTAGCTCCAATAGCAGCAAGTACTCCAACTGTTATATTTTGTTTACCTAGATTTTATTAACTGATCTTCATGTTCTTTCTCTACGGTGCTAATTTTGTTTTGTTACCCAATGATTGATTTCCAACAGGTTGAGTCAAAAAAATTTGGACTTCTTGCAAATTGGCAGCGAGAGTACTCCATGGAGGATATACTGACGCAGCTGAAAAAGGAAATGACAGCCCCGCATAACCGAAAGCTGGTCCAACCTCCAGAAGGCACCTACTTCTAGTTCCAAGATCATGAACACATGATCATATGGTGTGCTATATGCAAATATAGTTTGCAGTGCTGTGTAATCCTGTGGAAGTTGAGCACATTCCAGGAAAGAACCAAAATCTTGATGATGATTTGCATTGCTTCATCGTTGATCAATAGTCTTTTCCTTGTCCAATCTGTTAAAGGGATGGTCTTTTAATGATGGAAAATGTGTCGATACAAATTTACCCAATAGTATTATCTAATTTGAGCGTTGGTTGTTTTCTGCATTACCCTCTCTCTCTCTCTCTCTCTCTCT

mRNA sequence

ATGAAAGTGGAAAACGGAACCATCTGGGAAGATGAATACTTGTCCTGCACTAATAATTATGAGGTGTGGGAATGTGCGATGGTACAACAAGGGGTGGTTGAAATCAAATTGGAACTCGCCAAACCTAAATTTGAGCGGTCAGTGCTAAATTGCAAAACAATTTTGATGTTCGCTGTGTTCCAAGATAGACACGACCCAGGTGGTGTTGGATTTTCACATATTATGATTGATTTGCTAAATCCTCCTCGTGCTTATGTGATTGTAAAGTTGTGTGATGTAGATGTCTCGCCATTGTCAAAACTTAAGCATCTTCTAAAGTGTTTGCTTTCTATCACAGTTCCTAGGAACTTCCGGCTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGTGATGGTACTGTGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGTTCATGGACTGGCACCATTATTGGTCCACACAATACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTTTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGTGTTCGTTTTCATTCAAGAGTCAACATGACATGCGTGAACCATGAAACTGGAGTGGTTGAGTCAAAAAAATTTGGACTTCTTGCAAATTGGCAGCGAGAGTACTCCATGGAGGATATACTGACGCAGCTGAAAAAGGAAATGACAGCCCCGCATAACCGAAAGCTGGTCCAACCTCCAGAAGGCACCTACTTCTAGTTCCAAGATCATGAACACATGATCATATGGTGTGCTATATGCAAATATAGTTTGCAGTGCTGTGTAATCCTGTGGAAGTTGAGCACATTCCAGGAAAGAACCAAAATCTTGATGATGATTTGCATTGCTTCATCGTTGATCAATAGTCTTTTCCTTGTCCAATCTGTTAAAGGGATGGTCTTTTAATGATGGAAAATGTGTCGATACAAATTTACCCAATAGTATTATCTAATTTGAGCGTTGGTTGTTTTCTGCATTACCCTCTCTCTCTCTCTCTCTCTCTCT

Coding sequence (CDS)

ATGAAAGTGGAAAACGGAACCATCTGGGAAGATGAATACTTGTCCTGCACTAATAATTATGAGGTGTGGGAATGTGCGATGGTACAACAAGGGGTGGTTGAAATCAAATTGGAACTCGCCAAACCTAAATTTGAGCGGTCAGTGCTAAATTGCAAAACAATTTTGATGTTCGCTGTGTTCCAAGATAGACACGACCCAGGTGGTGTTGGATTTTCACATATTATGATTGATTTGCTAAATCCTCCTCGTGCTTATGTGATTGTAAAGTTGTGTGATGTAGATGTCTCGCCATTGTCAAAACTTAAGCATCTTCTAAAGTGTTTGCTTTCTATCACAGTTCCTAGGAACTTCCGGCTGCTGGAGGAACTTGAACGTGGAGAAAAGGGCATTGGTGATGGTACTGTGAGCTATGGAATGGATGATGGAGATGACATTTATATGCGTTCATGGACTGGCACCATTATTGGTCCACACAATACGGTACATGAAGGTAGAATTTATCAGTTGAAGCTTTTCTGTGATAAAGATTACCCTGATAAGCCACCAAGTGTTCGTTTTCATTCAAGAGTCAACATGACATGCGTGAACCATGAAACTGGAGTGGTTGAGTCAAAAAAATTTGGACTTCTTGCAAATTGGCAGCGAGAGTACTCCATGGAGGATATACTGACGCAGCTGAAAAAGGAAATGACAGCCCCGCATAACCGAAAGCTGGTCCAACCTCCAGAAGGCACCTACTTCTAG

Protein sequence

MKVENGTIWEDEYLSCTNNYEVWECAMVQQGVVEIKLELAKPKFERSVLNCKTILMFAVFQDRHDPGGVGFSHIMIDLLNPPRAYVIVKLCDVDVSPLSKLKHLLKCLLSITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKEMTAPHNRKLVQPPEGTYF
Homology
[Close]
BLAST of CmoCh14G003340 vs. ExPASy Swiss-Prot
Match: Q9SJ44 (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UEV1C PE=1 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.5e-74
Identity = 125/138 (90.58%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 110 SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 169
           S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL
Sbjct: 8   SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 67

Query: 170 KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE 229
           KLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+Y+MEDILTQLKKE
Sbjct: 68  KLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKE 127

Query: 230 MTAPHNRKLVQPPEGTYF 248
           M A HNRKLVQPPEGT+F
Sbjct: 128 MAASHNRKLVQPPEGTFF 145

[Close]
BLAST of CmoCh14G003340 vs. ExPASy Swiss-Prot
Match: Q9SVD7 (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UEV1D PE=1 SV=1)

HSP 1 Score: 275.8 bits (704), Expect = 4.8e-73
Identity = 125/138 (90.58%), Postives = 131/138 (94.93%), Query Frame = 0 

Query: 110 SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 169
           S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL
Sbjct: 9   SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 68

Query: 170 KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE 229
           KLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREY+MEDIL QLKKE
Sbjct: 69  KLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKE 128

Query: 230 MTAPHNRKLVQPPEGTYF 248
           M+  HNRKLVQPPEGT F
Sbjct: 129 MSTSHNRKLVQPPEGTCF 146

[Close]
BLAST of CmoCh14G003340 vs. ExPASy Swiss-Prot
Match: Q93YP0 (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UEV1A PE=1 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 4.4e-58
Identity = 100/134 (74.63%), Postives = 115/134 (85.82%), Query Frame = 0 

Query: 111 ITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLK 170
           + VPRNFRLLEELERGEKGIGDGTVSYGMDD DDIYM+SWTGTI+GP NT +EG+I+QLK
Sbjct: 8   VVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLK 67

Query: 171 LFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKEM 230
           LFC K+YP+ PP+VRF +R+NM CVN ETGVVE   F +L NW+REY+MEDIL +LKKEM
Sbjct: 68  LFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKKEM 127

Query: 231 TAPHNRKLVQPPEG 245
              HNRKL QPPEG
Sbjct: 128 MTSHNRKLAQPPEG 141

[Close]
BLAST of CmoCh14G003340 vs. ExPASy Swiss-Prot
Match: Q9CAB6 (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UEV1B PE=1 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.1e-56
Identity = 97/134 (72.39%), Postives = 114/134 (85.07%), Query Frame = 0 

Query: 111 ITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLK 170
           + VPRNFRLLEELERGEKGIGDGTVSYGMDD DDI M+SWTGTI+GPHNT +EG+I+QLK
Sbjct: 8   VVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLK 67

Query: 171 LFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKEM 230
           LFC KDYP+ PP+VRF SR+NM CVN E GVV+   F +L+NW+RE++MED+L QLKKEM
Sbjct: 68  LFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEM 127

Query: 231 TAPHNRKLVQPPEG 245
            +  NRKL QP EG
Sbjct: 128 MSSQNRKLAQPLEG 141

[Close]
BLAST of CmoCh14G003340 vs. ExPASy Swiss-Prot
Match: Q54D06 (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=44689 GN=ube2v PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 9.4e-45
Identity = 77/136 (56.62%), Postives = 105/136 (77.21%), Query Frame = 0 

Query: 112 TVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKL 171
           T+PRNF LLEELE GEK  GDGT+SYG++  DDI + SW GTIIGP NT  + R Y LKL
Sbjct: 3   TIPRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKL 62

Query: 172 FCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKEMT 231
           +CDKDYP+KPP+VRF +++N+ CVN + GVV+ K   +L+NW  +  +++IL++L++EM+
Sbjct: 63  YCDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMS 122

Query: 232 APHNRKLVQPPEGTYF 248
           +  N+KLVQPPEG  F
Sbjct: 123 SSSNKKLVQPPEGANF 138

[Close]
BLAST of CmoCh14G003340 vs. ExPASy TrEMBL
Match: A0A6J1F593 (ubiquitin-conjugating enzyme E2 variant 1C-like OS=Cucurbita moschata OX=3662 GN=LOC111442285 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 1.3e-76
Identity = 136/138 (98.55%), Postives = 137/138 (99.28%), Query Frame = 0 

Query: 110 SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 169
           S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL
Sbjct: 9   SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 68

Query: 170 KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE 229
           KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE
Sbjct: 69  KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE 128

Query: 230 MTAPHNRKLVQPPEGTYF 248
           MTAPHNRKLVQPPEGTYF
Sbjct: 129 MTAPHNRKLVQPPEGTYF 146

[Close]
BLAST of CmoCh14G003340 vs. ExPASy TrEMBL
Match: A0A251VSJ8 (Putative ubiquitin-conjugating enzyme/RWD-like protein OS=Helianthus annuus OX=4232 GN=HannXRQ_Chr01g0025561 PE=4 SV=1)

HSP 1 Score: 295.0 bits (754), Expect = 2.8e-76
Identity = 139/186 (74.73%), Postives = 155/186 (83.33%), Query Frame = 0 

Query: 75  MIDLLNPPRAYVIVKLC-------------DVDVSPLSKLKHLLKCLLSITVPRNFRLLE 134
           MI LL PP +Y+ ++ C              +D +P ++L  L     S+ VPRNFRLLE
Sbjct: 1   MIPLLYPPTSYLFIRFCVRLSSPPPPRSDRSIDQTPFTQLMTLGSGGSSVVVPRNFRLLE 60

Query: 135 ELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPDKP 194
           ELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN+VHEGRIY LKLFCDKDYP+KP
Sbjct: 61  ELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNSVHEGRIYTLKLFCDKDYPEKP 120

Query: 195 PSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKEMTAPHNRKLVQP 248
           P+VRFHSRVNMTCVNHETGVVE KKFG+LANWQREY+MEDILTQLKKEM+APHNRKLVQP
Sbjct: 121 PTVRFHSRVNMTCVNHETGVVEPKKFGILANWQREYTMEDILTQLKKEMSAPHNRKLVQP 180

[Close]
BLAST of CmoCh14G003340 vs. ExPASy TrEMBL
Match: A0A6J1J6I4 (ubiquitin-conjugating enzyme E2 variant 1C OS=Cucurbita maxima OX=3661 GN=LOC111481792 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 4.8e-76
Identity = 135/138 (97.83%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 110 SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 169
           S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL
Sbjct: 9   SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 68

Query: 170 KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE 229
           KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE
Sbjct: 69  KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE 128

Query: 230 MTAPHNRKLVQPPEGTYF 248
           M APHNRKLVQPPEGTYF
Sbjct: 129 MAAPHNRKLVQPPEGTYF 146

[Close]
BLAST of CmoCh14G003340 vs. ExPASy TrEMBL
Match: A0A6J1CTV6 (ubiquitin-conjugating enzyme E2 variant 1C OS=Momordica charantia OX=3673 GN=LOC111014288 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.1e-75
Identity = 134/138 (97.10%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 110 SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 169
           S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL
Sbjct: 9   SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 68

Query: 170 KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE 229
           KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREY+MEDILTQLKKE
Sbjct: 69  KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKE 128

Query: 230 MTAPHNRKLVQPPEGTYF 248
           M APHNRKLVQPPEGTYF
Sbjct: 129 MAAPHNRKLVQPPEGTYF 146

[Close]
BLAST of CmoCh14G003340 vs. ExPASy TrEMBL
Match: A0A0A0LE42 (UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778350 PE=4 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 3.1e-75
Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0 

Query: 110 SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 169
           S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL
Sbjct: 9   SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 68

Query: 170 KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE 229
           KLFCDKDYP+KPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREY+MEDILTQLKKE
Sbjct: 69  KLFCDKDYPEKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYTMEDILTQLKKE 128

Query: 230 MTAPHNRKLVQPPEGTYF 248
           M APHNRKLVQPPEGTYF
Sbjct: 129 MAAPHNRKLVQPPEGTYF 146

[Close]
BLAST of CmoCh14G003340 vs. TAIR 10
Match: AT2G36060.1 (MMS ZWEI homologue 3 )

HSP 1 Score: 280.8 bits (717), Expect = 1.1e-75
Identity = 125/138 (90.58%), Postives = 135/138 (97.83%), Query Frame = 0 

Query: 110 SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 169
           S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL
Sbjct: 8   SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 67

Query: 170 KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE 229
           KLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+Y+MEDILTQLKKE
Sbjct: 68  KLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKE 127

Query: 230 MTAPHNRKLVQPPEGTYF 248
           M A HNRKLVQPPEGT+F
Sbjct: 128 MAASHNRKLVQPPEGTFF 145

[Close]
BLAST of CmoCh14G003340 vs. TAIR 10
Match: AT2G36060.2 (MMS ZWEI homologue 3 )

HSP 1 Score: 276.2 bits (705), Expect = 2.6e-74
Identity = 125/139 (89.93%), Postives = 135/139 (97.12%), Query Frame = 0 

Query: 110 SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN-TVHEGRIYQ 169
           S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN TVHEGRIYQ
Sbjct: 8   SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNVTVHEGRIYQ 67

Query: 170 LKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKK 229
           LKLFCDKDYP+KPP+VRFHSR+NMTCVNH+TGVV+SKKFG+LANWQR+Y+MEDILTQLKK
Sbjct: 68  LKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKK 127

Query: 230 EMTAPHNRKLVQPPEGTYF 248
           EM A HNRKLVQPPEGT+F
Sbjct: 128 EMAASHNRKLVQPPEGTFF 146

[Close]
BLAST of CmoCh14G003340 vs. TAIR 10
Match: AT3G52560.1 (ubiquitin E2 variant 1D-4 )

HSP 1 Score: 275.8 bits (704), Expect = 3.4e-74
Identity = 125/138 (90.58%), Postives = 131/138 (94.93%), Query Frame = 0 

Query: 110 SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 169
           S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL
Sbjct: 9   SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 68

Query: 170 KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE 229
           KLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREY+MEDIL QLKKE
Sbjct: 69  KLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKE 128

Query: 230 MTAPHNRKLVQPPEGTYF 248
           M+  HNRKLVQPPEGT F
Sbjct: 129 MSTSHNRKLVQPPEGTCF 146

[Close]
BLAST of CmoCh14G003340 vs. TAIR 10
Match: AT2G36060.3 (MMS ZWEI homologue 3 )

HSP 1 Score: 274.6 bits (701), Expect = 7.6e-74
Identity = 124/138 (89.86%), Postives = 134/138 (97.10%), Query Frame = 0 

Query: 110 SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 169
           S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL
Sbjct: 8   SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQL 67

Query: 170 KLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKKE 229
           KLFCDKDYP+KPP+VRFHSR+NMTCVNH+TG V+SKKFG+LANWQR+Y+MEDILTQLKKE
Sbjct: 68  KLFCDKDYPEKPPTVRFHSRINMTCVNHDTG-VDSKKFGVLANWQRQYTMEDILTQLKKE 127

Query: 230 MTAPHNRKLVQPPEGTYF 248
           M A HNRKLVQPPEGT+F
Sbjct: 128 MAASHNRKLVQPPEGTFF 144

[Close]
BLAST of CmoCh14G003340 vs. TAIR 10
Match: AT3G52560.2 (ubiquitin E2 variant 1D-4 )

HSP 1 Score: 271.2 bits (692), Expect = 8.4e-73
Identity = 125/139 (89.93%), Postives = 131/139 (94.24%), Query Frame = 0 

Query: 110 SITVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN-TVHEGRIYQ 169
           S+ VPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHN TVHEGRIYQ
Sbjct: 9   SVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNVTVHEGRIYQ 68

Query: 170 LKLFCDKDYPDKPPSVRFHSRVNMTCVNHETGVVESKKFGLLANWQREYSMEDILTQLKK 229
           LKLFCDKDYP+KPP+VRFHSRVNM CVNHETGVV+ KKFGLLANWQREY+MEDIL QLKK
Sbjct: 69  LKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKK 128

Query: 230 EMTAPHNRKLVQPPEGTYF 248
           EM+  HNRKLVQPPEGT F
Sbjct: 129 EMSTSHNRKLVQPPEGTCF 147

The following BLAST results are available for this feature:
BLAST of CmoCh14G003340 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9SJ441.5e-7490.58Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana OX=3702 GN=UE... [more]
Q9SVD74.8e-7390.58Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana OX=3702 GN=UE... [more]
Q93YP04.4e-5874.63Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana OX=3702 GN=UE... [more]
Q9CAB64.1e-5672.39Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana OX=3702 GN=UE... [more]
Q54D069.4e-4556.62Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum OX=... [more]
BLAST of CmoCh14G003340 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1F5931.3e-7698.55ubiquitin-conjugating enzyme E2 variant 1C-like OS=Cucurbita moschata OX=3662 GN... [more]
A0A251VSJ82.8e-7674.73Putative ubiquitin-conjugating enzyme/RWD-like protein OS=Helianthus annuus OX=4... [more]
A0A6J1J6I44.8e-7697.83ubiquitin-conjugating enzyme E2 variant 1C OS=Cucurbita maxima OX=3661 GN=LOC111... [more]
A0A6J1CTV61.1e-7597.10ubiquitin-conjugating enzyme E2 variant 1C OS=Momordica charantia OX=3673 GN=LOC... [more]
A0A0A0LE423.1e-7596.38UBC core domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G778350 PE... [more]
BLAST of CmoCh14G003340 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G36060.11.1e-7590.58MMS ZWEI homologue 3 [more]
AT2G36060.22.6e-7489.93MMS ZWEI homologue 3 [more]
AT3G52560.13.4e-7490.58ubiquitin E2 variant 1D-4 [more]
AT2G36060.37.6e-7489.86MMS ZWEI homologue 3 [more]
AT3G52560.28.4e-7389.93ubiquitin E2 variant 1D-4 [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSMARTSM00212ubc_7coord: 117..245
e-value: 1.5E-4
score: 28.2
NoneNo IPR availablePANTHERPTHR24068:SF370UBIQUITIN-CONJUGATING ENZYME E2 VARIANT 1Dcoord: 111..241
NoneNo IPR availablePANTHERPTHR24068UBIQUITIN-CONJUGATING ENZYME E2coord: 111..241
IPR016135Ubiquitin-conjugating enzyme/RWD-likeGENE3D3.10.110.10Ubiquitin Conjugating Enzymecoord: 101..247
e-value: 7.1E-42
score: 144.4
IPR016135Ubiquitin-conjugating enzyme/RWD-likeSUPERFAMILY54495UBC-likecoord: 112..247
IPR000608Ubiquitin-conjugating enzyme E2PFAMPF00179UQ_concoord: 144..237
e-value: 1.9E-13
score: 50.3
IPR000608Ubiquitin-conjugating enzyme E2PROSITEPS50127UBC_2coord: 114..247
score: 32.051857

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G003340.1CmoCh14G003340.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006301 postreplication repair
biological_process GO:0070534 protein K63-linked ubiquitination
cellular_component GO:0005634 nucleus
molecular_function GO:0016746 acyltransferase activity
molecular_function GO:0004839 ubiquitin activating enzyme activity