CmoCh14G003330 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G003330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Protein GL2-INTERACTING REPRESSOR 1
Location	Cmo_Chr14: 1532884 .. 1533246 (+)
RNA-Seq Expression	CmoCh14G003330
Synteny	CmoCh14G003330

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGCAGAAGAAGCAGTGGAAGTGTTCCAAAGCTTGAGTTGAAATTGAACCTGTCGCCGCCGCGGCAACATCCTTTGGGGTCATCGCCGAGCCGATCAGCGACGTTGTCGCCCACATCGCCACCGAGCTCTTGCGTGTCGTTGGAACTAAACCAGGACGACAGCAGTGCCGCTCTCCGATACTCCAGCAGTCCAGAAGCGACATCGATGGTGCTGGTCGGCTGCCCTCGGTGCCTGATGTACGTGATGCTGTCGGAGAATGAACCCAAATGCCCAAAATGCAAAAGCTCTGTTTTGCTTGATTTCCTCCATGACGGCGCCGCTTCAGGTCCTCCGTCAACGGCGGCCGCCAGAAAGCTCTAA

mRNA sequence

ATGAGCAGAAGAAGCAGTGGAAGTGTTCCAAAGCTTGAGTTGAAATTGAACCTGTCGCCGCCGCGGCAACATCCTTTGGGGTCATCGCCGAGCCGATCAGCGACGTTGTCGCCCACATCGCCACCGAGCTCTTGCGTGTCGTTGGAACTAAACCAGGACGACAGCAGTGCCGCTCTCCGATACTCCAGCAGTCCAGAAGCGACATCGATGGTGCTGGTCGGCTGCCCTCGGTGCCTGATGTACGTGATGCTGTCGGAGAATGAACCCAAATGCCCAAAATGCAAAAGCTCTGTTTTGCTTGATTTCCTCCATGACGGCGCCGCTTCAGGTCCTCCGTCAACGGCGGCCGCCAGAAAGCTCTAA

Coding sequence (CDS)

ATGAGCAGAAGAAGCAGTGGAAGTGTTCCAAAGCTTGAGTTGAAATTGAACCTGTCGCCGCCGCGGCAACATCCTTTGGGGTCATCGCCGAGCCGATCAGCGACGTTGTCGCCCACATCGCCACCGAGCTCTTGCGTGTCGTTGGAACTAAACCAGGACGACAGCAGTGCCGCTCTCCGATACTCCAGCAGTCCAGAAGCGACATCGATGGTGCTGGTCGGCTGCCCTCGGTGCCTGATGTACGTGATGCTGTCGGAGAATGAACCCAAATGCCCAAAATGCAAAAGCTCTGTTTTGCTTGATTTCCTCCATGACGGCGCCGCTTCAGGTCCTCCGTCAACGGCGGCCGCCAGAAAGCTCTAA

Protein sequence

MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALRYSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKL

Homology

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BLAST of CmoCh14G003330 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.0e-36
Identity = 85/119 (71.43%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPP--RQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAA 60
           MSRRS    PKLELKLNLSPP   Q  +  SPSRSAT SPTSPPSSCVS E+NQD+ S  
Sbjct: 1   MSRRS----PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPS-- 60

Query: 61  LRYSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAA 118
           +RYS+SPE TSMVLVGCPRCLMYVMLSE++PKCPKCKS+VLLDFLH+ A +   + AAA
Sbjct: 61  VRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNANANAAAA 113

[Close]

BLAST of CmoCh14G003330 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 9.9e-24
Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 60
           MSRR+    PKLEL+LNLSPP       S  RS   S T+ PSSCVS E NQ+++     
Sbjct: 1   MSRRNKNG-PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEENET--- 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAA 117
                  TSMVLVGCPRCLMYVMLS+++PKCPKCKS+VLLDFL + A +   +TAA
Sbjct: 61  ------ITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAATTATAA 106

[Close]

BLAST of CmoCh14G003330 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 9.0e-09
Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 12  LELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALRYSSSPEATSMV 71
           L+LKLN+          SPS  ++L   S  SS  S E                EA SMV
Sbjct: 11  LDLKLNI----------SPSLDSSLLTESSSSSLCSEEAE----------GGGGEAKSMV 70

Query: 72  LVGCPRCLMYVMLS-ENEPKCPKCKSSVLLDFL 104
           +VGCP C+MY++ S EN+P+CP+C S VLLDFL
Sbjct: 71  VVGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83

[Close]

BLAST of CmoCh14G003330 vs. ExPASy TrEMBL
Match: A0A6J1F871 (uncharacterized protein LOC111441745 OS=Cucurbita moschata OX=3662 GN=LOC111441745 PE=4 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 2.9e-58
Identity = 120/120 (100.00%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 60
           MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKL 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKL
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKL 120

[Close]

BLAST of CmoCh14G003330 vs. ExPASy TrEMBL
Match: A0A6J1J6Y2 (uncharacterized protein LOC111481787 OS=Cucurbita maxima OX=3661 GN=LOC111481787 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.1e-57
Identity = 118/120 (98.33%), Postives = 120/120 (100.00%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 60
           MSRRSSGSVPKL+LKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR
Sbjct: 33  MSRRSSGSVPKLDLKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 92

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKL 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARK+
Sbjct: 93  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKI 152

[Close]

BLAST of CmoCh14G003330 vs. ExPASy TrEMBL
Match: A0A5A7TLW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold23737G00010 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.6e-53
Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 60
           MSRRSSGSVPKLELKLNLSPPR HPL SSPSRSAT+SPTSPPSSCVS ELNQDD  AALR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKL 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAAS PPST AARK+
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

[Close]

BLAST of CmoCh14G003330 vs. ExPASy TrEMBL
Match: A0A1S3B7J8 (uncharacterized protein LOC103486655 OS=Cucumis melo OX=3656 GN=LOC103486655 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 3.6e-53
Identity = 111/120 (92.50%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 60
           MSRRSSGSVPKLELKLNLSPPR HPL SSPSRSAT+SPTSPPSSCVS ELNQDD  AALR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKL 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAAS PPST AARK+
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

[Close]

BLAST of CmoCh14G003330 vs. ExPASy TrEMBL
Match: A0A0A0LBI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778340 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.1e-52
Identity = 110/120 (91.67%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 60
           MSRRSSGSVPKLELKLNLSPPR HPL SSPSRSAT+SPTSPPSSCVS ELNQDD  A LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKL 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAAS PPST AARK+
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

[Close]

BLAST of CmoCh14G003330 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 152.5 bits (384), Expect = 2.1e-37
Identity = 85/119 (71.43%), Postives = 96/119 (80.67%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPP--RQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAA 60
           MSRRS    PKLELKLNLSPP   Q  +  SPSRSAT SPTSPPSSCVS E+NQD+ S  
Sbjct: 1   MSRRS----PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDEPS-- 60

Query: 61  LRYSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAA 118
           +RYS+SPE TSMVLVGCPRCLMYVMLSE++PKCPKCKS+VLLDFLH+ A +   + AAA
Sbjct: 61  VRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNANANAAAA 113

[Close]

BLAST of CmoCh14G003330 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 110.9 bits (276), Expect = 7.1e-25
Identity = 65/116 (56.03%), Postives = 78/116 (67.24%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 60
           MSRR+    PKLEL+LNLSPP       S  RS   S T+ PSSCVS E NQ+++     
Sbjct: 1   MSRRNKNG-PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEENET--- 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAA 117
                  TSMVLVGCPRCLMYVMLS+++PKCPKCKS+VLLDFL + A +   +TAA
Sbjct: 61  ------ITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAATTATAA 106

[Close]

BLAST of CmoCh14G003330 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 61.2 bits (147), Expect = 6.4e-10
Identity = 40/93 (43.01%), Postives = 51/93 (54.84%), Query Frame = 0


Query: 12  LELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALRYSSSPEATSMV 71
           L+LKLN+          SPS  ++L   S  SS  S E                EA SMV
Sbjct: 11  LDLKLNI----------SPSLDSSLLTESSSSSLCSEEAE----------GGGGEAKSMV 70

Query: 72  LVGCPRCLMYVMLS-ENEPKCPKCKSSVLLDFL 104
           +VGCP C+MY++ S EN+P+CP+C S VLLDFL
Sbjct: 71  VVGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83

[Close]

BLAST of CmoCh14G003330 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 38/104 (36.54%), Postives = 51/104 (49.04%), Query Frame = 0


Query: 12  LELKL---NLSPPRQHPLGS-SPSRSATLSPTSPPSSCVSLELNQDDSSAALRYS----- 71
           LELKL   ++S P   PL S SP++S +   +      V L L + +     R S     
Sbjct: 142 LELKLVPSSISRPLPPPLSSFSPNQSLSYLSSVCTLDKVKLALERAEKDTKKRQSPEDDG 201

Query: 72  ------SSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLL 101
                 S+  A S V  GCP CL YV +++N PKCP+C S V L
Sbjct: 202 VYDGTASATVAASQVAAGCPGCLSYVFVAKNNPKCPRCHSFVPL 245

[Close]

BLAST of CmoCh14G003330 vs. TAIR 10
Match: AT3G52561.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 4.8e-05
Identity = 25/76 (32.89%), Postives = 40/76 (52.63%), Query Frame = 0


Query: 27  GSSPSRSATLSPTSPPSSCVSLELNQDDSSAALRYSSSPEATSMVLVGCPRCLMYVMLSE 86
           G    RS +   +S  +SC++    +     A  +    EA  MV++GC  C+MYVM+ +
Sbjct: 25  GRFEGRSPSSDTSSSQNSCLT-RTEEVKEEVASSWVDEEEAPEMVVMGCRSCMMYVMVLQ 84

Query: 87  NEPKCPKCKSSVLLDF 103
              +CPKCK + L+ F
Sbjct: 85  ERQRCPKCKCTDLIFF 99

The following BLAST results are available for this feature:

BLAST of CmoCh14G003330 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNI1	3.0e-36	71.43	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]
Q9SRN4	9.9e-24	56.03	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]
Q9FMS4	9.0e-09	43.01	Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of CmoCh14G003330 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F871	2.9e-58	100.00	uncharacterized protein LOC111441745 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A6J1J6Y2	1.1e-57	98.33	uncharacterized protein LOC111481787 OS=Cucurbita maxima OX=3661 GN=LOC111481787...	[more]
A0A5A7TLW3	3.6e-53	92.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B7J8	3.6e-53	92.50	uncharacterized protein LOC103486655 OS=Cucumis melo OX=3656 GN=LOC103486655 PE=...	[more]
A0A0A0LBI1	1.1e-52	91.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778340 PE=4 SV=1	[more]

BLAST of CmoCh14G003330 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06270.1	2.1e-37	71.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G11600.1	7.1e-25	56.03	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT5G22270.1	6.4e-10	43.01	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G16500.1	1.3e-05	36.54	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G52561.1	4.8e-05	32.89	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 22..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 3..113
None	No IPR available	PANTHER	PTHR33177:SF47	BNAC02G02040D PROTEIN	coord: 3..113

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G003330.1	CmoCh14G003330.1	mRNA