CmoCh14G003230 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G003230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Genome assembly, chromosome: II
Location	Cmo_Chr14: 1488398 .. 1489290 (+)
RNA-Seq Expression	CmoCh14G003230
Synteny	CmoCh14G003230

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCCGTCCAGATCCTCCACCTGCAAATTCACTTCCCTCACCTGTAAATTCCCTCCTTCCCATCCTCCGCACGTCACTGCAATCCCGCACTGCACGCATTCCATCGCCGTTCCTCTTTCACCGTCGAGCACGGCTGCGAATCTTACGTGCACCTCCCCGCTCAACCAGTGTCGCTGCACGCTGACCGGCCGGTAGCTCGACAGATTCATCGCTCGCCGTCCGGCTGTGTCGATCATGATCCAGCTCAGAGTCAGATCCTCCGTAAGCTCCCAACATGTATTTCCGTCGCCGATTGGAAATTTAATCGGCGTTTGAACTACGTCCTTAGGATCAAGCATATCGATTCGAAACGGCGTGCATCGGAACCATCCGGAGAGGGTCTCTGTCTCGACGACTTTGCTGAAAACCATCTCTCCCCGGTAGTAGATGTCGACGGCGGAGATCAATTCCGGCGTAAAGTGGTGGCGTCGGCGGCTGCGGCGGCTGTAGGTTGCCGAGGACGGAGAAGAAGAGGTTGAAGTTTCGGAGTGATAAGAAAGACGAGGGAAGGAATCAGAGAAGAAGGACCTAGGACCGTTGGGAAATTCTGAAATCAGAGCGTGGAGGCGCTGTGTCGCCGTCGACGGCCACGTGGAGCGGCAAAGTTCCGCCCAGAGGTTTGTGTCGGCAGTGAGGCAGTGAAGTTGCGACGAAGTTGAGGCGACCGCGGCAAGTGCTGGTCCATCGAGACGCGTCAAGATGTGAGTTCGGAGAACATCTGGATGGATATCGGTAACAGACGTAGTAGCGGCGTCACCGTCACCGGAGGAGAACGCCGACGACGCCAACGGGGAAGAGGTCCGATATAGCTCCGGGCCTGAAATCCCAATGGTACAAAATGACATTTTCTAG

mRNA sequence

ATGTTCCGTCCAGATCCTCCACCTGCAAATTCACTTCCCTCACCTGTAAATTCCCTCCTTCCCATCCTCCGCACGTCACTGCAATCCCGCACTGCACGCATTCCATCGCCGTTCCTCTTTCACCGTCGAGCACGGCTGCGAATCTTACTGTCGCTGCACGCTGACCGGCCGGTAGCTCGACAGATTCATCGCTCGCCGTCCGGCTGTGTCGATCATGATCCAGCTCAGAGTCAGATCCTCCGTAAGCTCCCAACATGTATTTCCGTCGCCGATTGGAAATTTAATCGGCGTTTGAACTACGTCCTTAGGATCAAGCATATCGATTCGAAACGGCGTGCATCGGAACCATCCGGAGAGGGTCTCTGTCTCGACGACTTTGCTGAAAACCATCTCTCCCCGGTAGTAGATGTCGACGGCGGAGATCAATTCCGGCGTAAAGTGGTGGCGTCGGCGGCTGCGGCGGCTGTAGGTTGCCGAGGACGGAGAAGAAGAGAGCGTGGAGGCGCTGTGTCGCCGTCGACGGCCACGTGGAGCGGCAAAGTTCCGCCCAGAGACGTAGTAGCGGCGTCACCGTCACCGGAGGAGAACGCCGACGACGCCAACGGGGAAGAGGTCCGATATAGCTCCGGGCCTGAAATCCCAATGGTACAAAATGACATTTTCTAG

Coding sequence (CDS)

ATGTTCCGTCCAGATCCTCCACCTGCAAATTCACTTCCCTCACCTGTAAATTCCCTCCTTCCCATCCTCCGCACGTCACTGCAATCCCGCACTGCACGCATTCCATCGCCGTTCCTCTTTCACCGTCGAGCACGGCTGCGAATCTTACTGTCGCTGCACGCTGACCGGCCGGTAGCTCGACAGATTCATCGCTCGCCGTCCGGCTGTGTCGATCATGATCCAGCTCAGAGTCAGATCCTCCGTAAGCTCCCAACATGTATTTCCGTCGCCGATTGGAAATTTAATCGGCGTTTGAACTACGTCCTTAGGATCAAGCATATCGATTCGAAACGGCGTGCATCGGAACCATCCGGAGAGGGTCTCTGTCTCGACGACTTTGCTGAAAACCATCTCTCCCCGGTAGTAGATGTCGACGGCGGAGATCAATTCCGGCGTAAAGTGGTGGCGTCGGCGGCTGCGGCGGCTGTAGGTTGCCGAGGACGGAGAAGAAGAGAGCGTGGAGGCGCTGTGTCGCCGTCGACGGCCACGTGGAGCGGCAAAGTTCCGCCCAGAGACGTAGTAGCGGCGTCACCGTCACCGGAGGAGAACGCCGACGACGCCAACGGGGAAGAGGTCCGATATAGCTCCGGGCCTGAAATCCCAATGGTACAAAATGACATTTTCTAG

Protein sequence

MFRPDPPPANSLPSPVNSLLPILRTSLQSRTARIPSPFLFHRRARLRILLSLHADRPVARQIHRSPSGCVDHDPAQSQILRKLPTCISVADWKFNRRLNYVLRIKHIDSKRRASEPSGEGLCLDDFAENHLSPVVDVDGGDQFRRKVVASAAAAAVGCRGRRRRERGGAVSPSTATWSGKVPPRDVVAASPSPEENADDANGEEVRYSSGPEIPMVQNDIF

Homology

[Close]

BLAST of CmoCh14G003230 vs. ExPASy TrEMBL
Match: A0A1D5UQH6 (Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCUS2954 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 9.8e-04
Identity = 42/127 (33.07%), Postives = 58/127 (45.67%), Query Frame = 0


Query: 56  RPVARQIHRSPSGCVDHDPAQSQILRKLPTCISVADWKFNRRLNYVLRIKHIDSKRRASE 115
           RP AR +HR  +G VD  PAQ ++ R           +  R    +L +  +D++RRA E
Sbjct: 144 RPPARHVHRPAAGGVDDHPAQLELRR----------GERRRHRRRLLAVHGLDAERRAEE 203

Query: 116 PSGEGLCLDDFAENHLSPVVDVDGGDQFRRKVVASAAAAAVGCRGRRRRERGGAVSPSTA 175
           P      L D  ++ L+PVV V  GD+ R        AA  G  G R RERG     +  
Sbjct: 204 PRRRRGRLHDAVQHGLAPVVHVHRGDEPR------GEAAGAGLPGVRARERGRVGEEAAR 254

Query: 176 TWSGKVP 183
              G+ P
Sbjct: 264 RHRGEEP 254

The following BLAST results are available for this feature:

BLAST of CmoCh14G003230 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G003230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1D5UQH6	9.8e-04	33.07	Genome assembly, chromosome: II OS=Triticum aestivum OX=4565 GN=CAMPLR22A2D_LOCU...	[more]

BLAST of CmoCh14G003230 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 160..221

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G003230.1	CmoCh14G003230.1	mRNA