CmoCh14G003020 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G003020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
Descriptioncytochrome b-c1 complex subunit 9-like
LocationCmo_Chr14: 1395737 .. 1397715 (+)
RNA-Seq ExpressionCmoCh14G003020
SyntenyCmoCh14G003020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTCGCTATTTCAATTAAACCGGAGCGGTTCATCCAGATCGTTAAGGGTTATTGCAGCAGAGTCGAGTCGGTTCGAATCGGTTCGAAGCGGTCAAGAGTTGCAACAAATCAAACTACTCCATTCCCGTCTTCTTCTCTCAACCAAAGGCGCGGGAAGTTTCTACTAACCCTAACGCATCGATCAGAAGGCAAAGAACTCGCGAGAACATCGACAATGAACTCAGCAGGTCGAAGAAGCGGAGGAGGCCTTTTCGAAGGCCTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTCACCTTCATCATCGCCGGTGCTTTTCTCGGAGAGCGGGTAATGTTGTGGACCTCATTTTTCATACTCATTCATGTCTGTTCCTTTTTTCTCTATATTTTTTTTTGGTGGATTGTGGTTTTGTTAATTTCGTTTTCCGCACTTGATCTGAGGGTCTAGTTTTTGCAAATCACTGGATATTGGTGTTAAACTTCGTGGCTATGTTATCGCTGATTCATGGAAAAAGTTCAACGAAATAAGTTTATTCGTATCTGCCCGCTCACAAGGTGAAACTGTATTGAAATTTATGGTTTATCTGCTGGAGGAGAAACGATAAAGCGTAGAGGATTCATATATTGGTTTTTTTTTTTTTTTTGTTCCAACATCCTCTTTGGATTCATATATTGGTTCTGGCATCAATTAAAAAATTCGCCGAACATGATCGTATTGAATTTCATTGATGATTGTGTGCAGATTCTGAATTATGTAAATACGGAATTTGGGCATTATTTGATCTGTTTATTGTAGTCAGAGGGATTCATTTTTTGCTTTAAATTTTAAACTATCATGATAATGGAAGTGGTAACCAGGAAAAACGAACGTAAGGATGCTTCTCTGTTTGTTTTATGGACTGTTATGTAATGGGCATTGTGGCAGGGGACTTGTGAGCCGCATGGCATTTGTGTTGTTTCTGTAAGTTTATGGTATCTTTTTCTTACCTTAATGCTAGTATTTCTAATGGCGCAGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTTGGGGTATGGAACTTAACCCCATAAATTGATTTACTTTGTTTTTCTGCGTACACATTTCAAATTTGTTGATGGCCTCTTTCTCCACATAGACGATCATTTTGGCTATTCTTGTGTGCTCCATTAATCTAGAATAAATACTTGATGTTTTATTCTGGATCTTTATTTGAAGATCATTTATTGTGTACTTAAGATCAGGAAAGTCTTGATTTCTAGAAAGTTAAGGCTGTATTAGAACTTTCCTGGGATAGTTATAAACTAATTAGTTTGTGTATTAAACCGTGTCACGGTTCAGAAGCAAATTGGTTTTAACTACTCAGACCTATGGTTGTGATGTTCCCTTTTTCATGTATGTTAAGTGAGCTGTCAATAATTACTAACCACGGGCACCAAAAACATAACTCAACTAATTAAGATATTATATCCTTGATCGAAAGTCAAAACTTTCGAAGTTTGAAGACTACCTTAATCTTACATGTTGAACTCTTAAAAGGGCTGTTAGGATTGATACTCAGCACCCACAAAGTAAACAGTATTTATTAGTTTTTTTTTTTTTTAATTGAAAATGTTCTTCATAACGATGAGTAAAATGGGTCGAAAGAACAAATCAAGGGTGATTTACATGCTAGACAAATTATATGAAGGAAATTTGAAACATTGCTTTTTTTTTTTTAAATTTATTTTCATTTTCCTCCAATTAAATGTCGATCTATATTATTCATCCTTATTCGACTACAATCCTTCTTTAGAGGAGATGCTTACCTGCGTAAAAGTGCTACTGAACAACTCTTGTTCCGAATTAGTAGCTTTCTTAACTCATTTTCAACTCTGTTTTGATATATGATGGTCTAATAATTATGCAGAAGCGGTATGAAGACATTTCAGTTTTGGGGCAAAGACCGTCGGAAGAATGA

mRNA sequence

ATGCTCGCTATTTCAATTAAACCGGAGCGGTTCATCCAGATCGTTAAGGGTTATTGCAGCAGAGTCGAGTCGGTTCGAATCGGTTCGAAGCGGTCAAGAGTTGCAACAAATCAAACTACTCCATTCCCGTCTTCTTCTCTCAACCAAAGGCGCGGGAAGTTTCTACTAACCCTAACGCATCGATCAGAAGGCAAAGAACTCGCGAGAACATCGACAATGAACTCAGCAGGTCGAAGAAGCGGAGGAGGCCTTTTCGAAGGCCTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTCACCTTCATCATCGCCGGTGCTTTTCTCGGAGAGCGGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTTGGGAAGCGGTATGAAGACATTTCAGTTTTGGGGCAAAGACCGTCGGAAGAATGA

Coding sequence (CDS)

ATGCTCGCTATTTCAATTAAACCGGAGCGGTTCATCCAGATCGTTAAGGGTTATTGCAGCAGAGTCGAGTCGGTTCGAATCGGTTCGAAGCGGTCAAGAGTTGCAACAAATCAAACTACTCCATTCCCGTCTTCTTCTCTCAACCAAAGGCGCGGGAAGTTTCTACTAACCCTAACGCATCGATCAGAAGGCAAAGAACTCGCGAGAACATCGACAATGAACTCAGCAGGTCGAAGAAGCGGAGGAGGCCTTTTCGAAGGCCTGTACAGAGTGATTATGCGCCGTAATTCTGTTTACGTCACCTTCATCATCGCCGGTGCTTTTCTCGGAGAGCGGGCTGTGGATTATGGAGTTCACAAGCTCTGGGAGTACAACAATGTTGGGAAGCGGTATGAAGACATTTCAGTTTTGGGGCAAAGACCGTCGGAAGAATGA

Protein sequence

MLAISIKPERFIQIVKGYCSRVESVRIGSKRSRVATNQTTPFPSSSLNQRRGKFLLTLTHRSEGKELARTSTMNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYEDISVLGQRPSEE
Homology
[Close]
BLAST of CmoCh14G003020 vs. ExPASy Swiss-Prot
Match: Q9LXJ2 (Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=QCR9 PE=1 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 6.8e-27
Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 73  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 132
           M  A RR+  G FEG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVGKRYE
Sbjct: 1   MEYAARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVGKRYE 60

Query: 133 DISVLGQRPSEE 145
           DISVLGQRP EE
Sbjct: 61  DISVLGQRPVEE 72

[Close]
BLAST of CmoCh14G003020 vs. ExPASy Swiss-Prot
Match: P46270 (Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 7.5e-26
Identity = 56/72 (77.78%), Postives = 61/72 (84.72%), Query Frame = 0 

Query: 73  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 132
           M SA RRSGGG+ EG YR++MRR  VYVTF+IAGA LGERAVDYGV  LWE NNVGKRYE
Sbjct: 1   MESAARRSGGGVLEGFYRLVMRRTPVYVTFVIAGALLGERAVDYGVKTLWEKNNVGKRYE 60

Query: 133 DISVLGQRPSEE 145
           DISVLGQRP +E
Sbjct: 61  DISVLGQRPVDE 72

[Close]
BLAST of CmoCh14G003020 vs. ExPASy Swiss-Prot
Match: Q7SGT7 (Cytochrome b-c1 complex subunit 9, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=qcr9 PE=1 SV=2)

HSP 1 Score: 45.8 bits (107), Expect = 4.7e-04
Identity = 20/47 (42.55%), Postives = 31/47 (65.96%), Query Frame = 0 

Query: 88  LYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYEDI 135
           LY +I R N+ +V  + AGAF  E A D G+ K+W+  N G++++DI
Sbjct: 4   LYNLIFRNNTAFVGAVFAGAFAFELAYDNGMDKVWDKINKGRQWKDI 50

[Close]
BLAST of CmoCh14G003020 vs. ExPASy TrEMBL
Match: A0A6J1J703 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC111481802 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 73  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 132
           MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE
Sbjct: 1   MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 60

Query: 133 DISVLGQRPSEE 145
           DISVLGQRPSEE
Sbjct: 61  DISVLGQRPSEE 72

[Close]
BLAST of CmoCh14G003020 vs. ExPASy TrEMBL
Match: A0A6J1F714 (cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC111441446 PE=3 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 72/72 (100.00%), Postives = 72/72 (100.00%), Query Frame = 0 

Query: 73  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 132
           MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE
Sbjct: 1   MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 60

Query: 133 DISVLGQRPSEE 145
           DISVLGQRPSEE
Sbjct: 61  DISVLGQRPSEE 72

[Close]
BLAST of CmoCh14G003020 vs. ExPASy TrEMBL
Match: A0A314YLX6 (Cytochrome b-c1 complex subunit 9 OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_40588 PE=3 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 9.5e-32
Identity = 70/72 (97.22%), Postives = 71/72 (98.61%), Query Frame = 0 

Query: 73  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 132
           MNSA RRSGGGLFEGLYRVIMRRNSVYVTF+IAGAFLGERAVDYGVHKLWEYNNVGKRYE
Sbjct: 1   MNSAARRSGGGLFEGLYRVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVGKRYE 60

Query: 133 DISVLGQRPSEE 145
           DISVLGQRPSEE
Sbjct: 61  DISVLGQRPSEE 72

[Close]
BLAST of CmoCh14G003020 vs. ExPASy TrEMBL
Match: M5WB59 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G110400 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.6e-31
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0 

Query: 73  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 132
           MNSA RRSGGGLFEG+YRVIMRRNSVYVTF+IAGAFLGERAVDYGVHKLWEYNNVGKRYE
Sbjct: 1   MNSAARRSGGGLFEGIYRVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVGKRYE 60

Query: 133 DISVLGQRPSEE 145
           DISVLGQRPSEE
Sbjct: 61  DISVLGQRPSEE 72

[Close]
BLAST of CmoCh14G003020 vs. ExPASy TrEMBL
Match: A0A5E4F1C6 (PREDICTED: cytochrome b-c1 complex subunit 9 OS=Prunus dulcis OX=3755 GN=ALMOND_2B027630 PE=3 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.6e-31
Identity = 69/72 (95.83%), Postives = 71/72 (98.61%), Query Frame = 0 

Query: 73  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 132
           MNSA RRSGGGLFEG+YRVIMRRNSVYVTF+IAGAFLGERAVDYGVHKLWEYNNVGKRYE
Sbjct: 1   MNSAARRSGGGLFEGIYRVIMRRNSVYVTFVIAGAFLGERAVDYGVHKLWEYNNVGKRYE 60

Query: 133 DISVLGQRPSEE 145
           DISVLGQRPSEE
Sbjct: 61  DISVLGQRPSEE 72

[Close]
BLAST of CmoCh14G003020 vs. TAIR 10
Match: AT3G52730.1 (ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein )

HSP 1 Score: 121.7 bits (304), Expect = 4.8e-28
Identity = 59/72 (81.94%), Postives = 62/72 (86.11%), Query Frame = 0 

Query: 73  MNSAGRRSGGGLFEGLYRVIMRRNSVYVTFIIAGAFLGERAVDYGVHKLWEYNNVGKRYE 132
           M  A RR+  G FEG Y++IMRRNSVYVTFIIAGAF GERAVDYGVHKLWE NNVGKRYE
Sbjct: 1   MEYAARRNQKGAFEGFYKLIMRRNSVYVTFIIAGAFFGERAVDYGVHKLWERNNVGKRYE 60

Query: 133 DISVLGQRPSEE 145
           DISVLGQRP EE
Sbjct: 61  DISVLGQRPVEE 72

The following BLAST results are available for this feature:
BLAST of CmoCh14G003020 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9LXJ26.8e-2781.94Cytochrome b-c1 complex subunit 9, mitochondrial OS=Arabidopsis thaliana OX=3702... [more]
P462707.5e-2677.78Cytochrome b-c1 complex subunit 9 OS=Solanum tuberosum OX=4113 PE=1 SV=1[more]
Q7SGT74.7e-0442.55Cytochrome b-c1 complex subunit 9, mitochondrial OS=Neurospora crassa (strain AT... [more]
BLAST of CmoCh14G003020 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1J7031.5e-32100.00cytochrome b-c1 complex subunit 9-like OS=Cucurbita maxima OX=3661 GN=LOC1114818... [more]
A0A6J1F7141.5e-32100.00cytochrome b-c1 complex subunit 9-like OS=Cucurbita moschata OX=3662 GN=LOC11144... [more]
A0A314YLX69.5e-3297.22Cytochrome b-c1 complex subunit 9 OS=Prunus yedoensis var. nudiflora OX=2094558 ... [more]
M5WB591.6e-3195.83Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_7G110400 PE=3 SV=1[more]
A0A5E4F1C61.6e-3195.83PREDICTED: cytochrome b-c1 complex subunit 9 OS=Prunus dulcis OX=3755 GN=ALMOND_... [more]
BLAST of CmoCh14G003020 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G52730.14.8e-2881.94ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036656Cytochrome b-c1 complex subunit 9 superfamilyGENE3D1.20.5.260coord: 82..136
e-value: 5.8E-24
score: 85.6
IPR036656Cytochrome b-c1 complex subunit 9 superfamilySUPERFAMILY81514Subunit X (non-heme 7 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase)coord: 84..134
IPR008027Cytochrome b-c1 complex subunit 9PFAMPF05365UCR_UQCRX_QCR9coord: 87..135
e-value: 4.9E-21
score: 74.4
IPR008027Cytochrome b-c1 complex subunit 9PANTHERPTHR12980UBIQUINOL-CYTOCHROME C REDUCTASE COMPLEX, SUBUNIT Xcoord: 73..144
NoneNo IPR availablePANTHERPTHR12980:SF4CYTOCHROME B-C1 COMPLEX SUBUNIT 9-LIKEcoord: 73..144

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G003020.1CmoCh14G003020.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c
cellular_component GO:0005750 mitochondrial respiratory chain complex III