CmoCh14G002930 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G002930
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionSolute carrier family 35 member F2-like
LocationCmo_Chr14: 1361251 .. 1361592 (+)
RNA-Seq ExpressionCmoCh14G002930
SyntenyCmoCh14G002930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCCAGCGGAGTTCCGGTGGAAATCGAAGAAGACGACGAACTCTTCGAGATCGATCTCGAGGCCGTTAACAGCATTATTTCTCCGCGGCATTTCTGCGAGGATACTTACGGTTTCTTCACGGCTACCGGCGGTGCCGCGCTTCTCGCCAACTGTCTGCTTCCGATCTCCGATTTGTCCAATGCCGTTCCGATGGCCGATTCCGCCGATTTTGAGATGTTTCCATTTGCAACGCCACCGGAGCCGACGCGTCTGGAGAAGGCTTTTCAGTTGCCGCTGGGTTTTGGCCTTCGTCAGGCTTTGATTAATCGATCGGAGATGAAGTTAAGCAGTGGATGA

mRNA sequence

ATGGCCTCCAGCGGAGTTCCGGTGGAAATCGAAGAAGACGACGAACTCTTCGAGATCGATCTCGAGGCCGTTAACAGCATTATTTCTCCGCGGCATTTCTGCGAGGATACTTACGGTTTCTTCACGGCTACCGGCGGTGCCGCGCTTCTCGCCAACTGTCTGCTTCCGATCTCCGATTTGTCCAATGCCGTTCCGATGGCCGATTCCGCCGATTTTGAGATGTTTCCATTTGCAACGCCACCGGAGCCGACGCGTCTGGAGAAGGCTTTTCAGTTGCCGCTGGGTTTTGGCCTTCGTCAGGCTTTGATTAATCGATCGGAGATGAAGTTAAGCAGTGGATGA

Coding sequence (CDS)

ATGGCCTCCAGCGGAGTTCCGGTGGAAATCGAAGAAGACGACGAACTCTTCGAGATCGATCTCGAGGCCGTTAACAGCATTATTTCTCCGCGGCATTTCTGCGAGGATACTTACGGTTTCTTCACGGCTACCGGCGGTGCCGCGCTTCTCGCCAACTGTCTGCTTCCGATCTCCGATTTGTCCAATGCCGTTCCGATGGCCGATTCCGCCGATTTTGAGATGTTTCCATTTGCAACGCCACCGGAGCCGACGCGTCTGGAGAAGGCTTTTCAGTTGCCGCTGGGTTTTGGCCTTCGTCAGGCTTTGATTAATCGATCGGAGATGAAGTTAAGCAGTGGATGA

Protein sequence

MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISDLSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSSG
Homology
BLAST of CmoCh14G002930 vs. ExPASy TrEMBL
Match: A0A6J1FAF9 (uncharacterized protein LOC111442274 OS=Cucurbita moschata OX=3662 GN=LOC111442274 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 4.3e-56
Identity = 113/113 (100.00%), Postives = 113/113 (100.00%), Query Frame = 0

Query: 1   MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISDL 60
           MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISDL
Sbjct: 16  MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISDL 75

Query: 61  SNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSSG 114
           SNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSSG
Sbjct: 76  SNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSSG 128

BLAST of CmoCh14G002930 vs. ExPASy TrEMBL
Match: A0A6J1IYI1 (uncharacterized protein LOC111481795 OS=Cucurbita maxima OX=3661 GN=LOC111481795 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 6.9e-54
Identity = 111/113 (98.23%), Postives = 111/113 (98.23%), Query Frame = 0

Query: 1   MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISDL 60
           MASSGVPVEIEEDDELFEIDLEAVNSIISPRHF EDTY FFTATGGAALLANCLLPISDL
Sbjct: 1   MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFSEDTYCFFTATGGAALLANCLLPISDL 60

Query: 61  SNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSSG 114
           SNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSSG
Sbjct: 61  SNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSSG 113

BLAST of CmoCh14G002930 vs. ExPASy TrEMBL
Match: A0A5A7TQP6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003790 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.4e-32
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0

Query: 1   MASSGV-PVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISD 60
           MAS  V PVEIEEDD+LFEIDLEAVNSI SP +F +D  GFFT  GGA LLANCLLPI+D
Sbjct: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60

Query: 61  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSS 113
           +SNAVP+ DS + E+F FA P EPT LEKA +LPLG GL +ALI+  EMK++S
Sbjct: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITS 113

BLAST of CmoCh14G002930 vs. ExPASy TrEMBL
Match: A0A1S3B7E8 (uncharacterized protein LOC103486601 OS=Cucumis melo OX=3656 GN=LOC103486601 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 7.4e-32
Identity = 77/113 (68.14%), Postives = 90/113 (79.65%), Query Frame = 0

Query: 1   MASSGV-PVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISD 60
           MAS  V PVEIEEDD+LFEIDLEAVNSI SP +F +D  GFFT  GGA LLANCLLPI+D
Sbjct: 1   MASGVVPPVEIEEDDDLFEIDLEAVNSITSPPNFSDDPCGFFTTAGGATLLANCLLPITD 60

Query: 61  LSNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSS 113
           +SNAVP+ DS + E+F FA P EPT LEKA +LPLG GL +ALI+  EMK++S
Sbjct: 61  VSNAVPIGDSNEGEIFLFAMPSEPTHLEKALRLPLGLGLHRALIDCLEMKITS 113

BLAST of CmoCh14G002930 vs. ExPASy TrEMBL
Match: A0A0A0LEJ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776340 PE=4 SV=1)

HSP 1 Score: 146.0 bits (367), Expect = 9.7e-32
Identity = 75/112 (66.96%), Postives = 89/112 (79.46%), Query Frame = 0

Query: 1   MASSGVPVEIEEDDELFEIDLEAVNSIISPRHFCEDTYGFFTATGGAALLANCLLPISDL 60
           MAS   P+EIEEDD+LFEIDLEAVNSIISP +F +DT GFFT  G   LLANCLLPI+D+
Sbjct: 1   MASGIDPLEIEEDDDLFEIDLEAVNSIISPPNFSDDTCGFFTTAGDTTLLANCLLPITDV 60

Query: 61  SNAVPMADSADFEMFPFATPPEPTRLEKAFQLPLGFGLRQALINRSEMKLSS 113
           S+AVP+ DS + E+F FA P EPT LEKA QLPLGF L +ALI+  EMK++S
Sbjct: 61  SSAVPVGDSNECEIFLFAMPSEPTHLEKALQLPLGFELHRALIDCLEMKITS 112

BLAST of CmoCh14G002930 vs. TAIR 10
Match: AT2G36295.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-06
Identity = 28/58 (48.28%), Postives = 40/58 (68.97%), Query Frame = 0

Query: 9  EIEEDDELFEIDLEAV-NSIISPRHFCEDTYGFFTATGGAALLANCLLPISDLSNAVP 66
          E + +D+LFEI+LEAV ++  SP + C+       A  G+ LLANCLLP +++SNAVP
Sbjct: 32 EEDGEDDLFEINLEAVSDTATSPPYDCQR----LPARTGSVLLANCLLPAAEISNAVP 85

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1FAF94.3e-56100.00uncharacterized protein LOC111442274 OS=Cucurbita moschata OX=3662 GN=LOC1114422... [more]
A0A6J1IYI16.9e-5498.23uncharacterized protein LOC111481795 OS=Cucurbita maxima OX=3661 GN=LOC111481795... [more]
A0A5A7TQP67.4e-3268.14Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B7E87.4e-3268.14uncharacterized protein LOC103486601 OS=Cucumis melo OX=3656 GN=LOC103486601 PE=... [more]
A0A0A0LEJ99.7e-3266.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G776340 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT2G36295.13.1e-0648.28unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae ... [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G002930.1CmoCh14G002930.1mRNA