CmoCh14G002550 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G002550
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr14: 1167756 .. 1168178 (+)
RNA-Seq ExpressionCmoCh14G002550
SyntenyCmoCh14G002550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCAATCGACGGGAAGGAGAAGGTGACGATTCGAGACGTCAGCCACGACGAGGAAGGAATAAAGCTAATCGAAAAGGCGAAGATCGACTCTCGCAACATCGACACCATTAGGTACGTTGAGAGGAAGCTCATTGACAAGGGATTCCAGCGTCTTGAACGCCAGCCGGTTCAACCGCCGCCCAAGTCCGGCCATGGCGGCAAGTTCACTTGGGAAGGACCCCGCGATTCCATTCAGAACGAGCTCTTCCCCGCCCCGGCTGCCATTGATGAGAACGATCCGAACTATGTGGATGAAGTGAAGGAGAAGGAGGAGGAGGTCGCCGGATTGGTGGTCGGTGAAGTGGAGGTGGCCAAGGCGGCGGAGGTCACGGAGGGGGTTGGGAGAGTGGAGGTGGATCCTCGGCTTCAACTGCAGTGA

mRNA sequence

ATGGAGGCAATCGACGGGAAGGAGAAGGTGACGATTCGAGACGTCAGCCACGACGAGGAAGGAATAAAGCTAATCGAAAAGGCGAAGATCGACTCTCGCAACATCGACACCATTAGGTACGTTGAGAGGAAGCTCATTGACAAGGGATTCCAGCGTCTTGAACGCCAGCCGGTTCAACCGCCGCCCAAGTCCGGCCATGGCGGCAAGTTCACTTGGGAAGGACCCCGCGATTCCATTCAGAACGAGCTCTTCCCCGCCCCGGCTGCCATTGATGAGAACGATCCGAACTATGTGGATGAAGTGAAGGAGAAGGAGGAGGAGGTCGCCGGATTGGTGGTCGGTGAAGTGGAGGTGGCCAAGGCGGCGGAGGTCACGGAGGGGGTTGGGAGAGTGGAGGTGGATCCTCGGCTTCAACTGCAGTGA

Coding sequence (CDS)

ATGGAGGCAATCGACGGGAAGGAGAAGGTGACGATTCGAGACGTCAGCCACGACGAGGAAGGAATAAAGCTAATCGAAAAGGCGAAGATCGACTCTCGCAACATCGACACCATTAGGTACGTTGAGAGGAAGCTCATTGACAAGGGATTCCAGCGTCTTGAACGCCAGCCGGTTCAACCGCCGCCCAAGTCCGGCCATGGCGGCAAGTTCACTTGGGAAGGACCCCGCGATTCCATTCAGAACGAGCTCTTCCCCGCCCCGGCTGCCATTGATGAGAACGATCCGAACTATGTGGATGAAGTGAAGGAGAAGGAGGAGGAGGTCGCCGGATTGGTGGTCGGTGAAGTGGAGGTGGCCAAGGCGGCGGAGGTCACGGAGGGGGTTGGGAGAGTGGAGGTGGATCCTCGGCTTCAACTGCAGTGA

Protein sequence

MEAIDGKEKVTIRDVSHDEEGIKLIEKAKIDSRNIDTIRYVERKLIDKGFQRLERQPVQPPPKSGHGGKFTWEGPRDSIQNELFPAPAAIDENDPNYVDEVKEKEEEVAGLVVGEVEVAKAAEVTEGVGRVEVDPRLQLQ
Homology
BLAST of CmoCh14G002550 vs. ExPASy TrEMBL
Match: A0A6J1F3B2 (uncharacterized protein LOC111441751 OS=Cucurbita moschata OX=3662 GN=LOC111441751 PE=4 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 3.8e-70
Identity = 140/140 (100.00%), Postives = 140/140 (100.00%), Query Frame = 0

Query: 1   MEAIDGKEKVTIRDVSHDEEGIKLIEKAKIDSRNIDTIRYVERKLIDKGFQRLERQPVQP 60
           MEAIDGKEKVTIRDVSHDEEGIKLIEKAKIDSRNIDTIRYVERKLIDKGFQRLERQPVQP
Sbjct: 2   MEAIDGKEKVTIRDVSHDEEGIKLIEKAKIDSRNIDTIRYVERKLIDKGFQRLERQPVQP 61

Query: 61  PPKSGHGGKFTWEGPRDSIQNELFPAPAAIDENDPNYVDEVKEKEEEVAGLVVGEVEVAK 120
           PPKSGHGGKFTWEGPRDSIQNELFPAPAAIDENDPNYVDEVKEKEEEVAGLVVGEVEVAK
Sbjct: 62  PPKSGHGGKFTWEGPRDSIQNELFPAPAAIDENDPNYVDEVKEKEEEVAGLVVGEVEVAK 121

Query: 121 AAEVTEGVGRVEVDPRLQLQ 141
           AAEVTEGVGRVEVDPRLQLQ
Sbjct: 122 AAEVTEGVGRVEVDPRLQLQ 141

BLAST of CmoCh14G002550 vs. ExPASy TrEMBL
Match: A0A6J1J5N9 (uncharacterized protein LOC111481977 OS=Cucurbita maxima OX=3661 GN=LOC111481977 PE=4 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 2.7e-60
Identity = 124/128 (96.88%), Postives = 125/128 (97.66%), Query Frame = 0

Query: 1   MEAIDGKEKVTIRDVSHDEEGIKLIEKAKIDSRNIDTIRYVERKLIDKGFQRLERQPVQP 60
           MEAID KEKVTIRDVSHDEEGIKLIEKAKIDSRNIDTIRYVERKLIDKGFQRLERQPVQP
Sbjct: 1   MEAIDEKEKVTIRDVSHDEEGIKLIEKAKIDSRNIDTIRYVERKLIDKGFQRLERQPVQP 60

Query: 61  PPKSGHGGKFTWEGPRDSIQNELFPAPAAIDENDPNYVDEVKEKEEEVAGLVVGEVEVAK 120
           PPKSGHGGKFTWEGPRDSIQNEL PAPAAIDENDPNYVDEV+EKEEEVAGLVVGEVEVAK
Sbjct: 61  PPKSGHGGKFTWEGPRDSIQNELSPAPAAIDENDPNYVDEVEEKEEEVAGLVVGEVEVAK 120

Query: 121 AAEVTEGV 129
           AAEV EGV
Sbjct: 121 AAEVMEGV 128

BLAST of CmoCh14G002550 vs. ExPASy TrEMBL
Match: A0A6J1F9T7 (uncharacterized protein LOC111442115 OS=Cucurbita moschata OX=3662 GN=LOC111442115 PE=4 SV=1)

HSP 1 Score: 213.4 bits (542), Expect = 6.1e-52
Identity = 115/143 (80.42%), Postives = 123/143 (86.01%), Query Frame = 0

Query: 5   DGKEKVTIRDVSHDEEGIKLIEKAKIDSRNIDTIRYVERKLIDKGFQRLERQPV------ 64
           D KEKVTIR VS DEEG K +EKA+ID+RNIDTI+YVE+KLIDKG QRL+R PV      
Sbjct: 6   DKKEKVTIRAVSRDEEGKKRVEKAEIDTRNIDTIKYVEKKLIDKGVQRLDRHPVHTRTGI 65

Query: 65  -QPPPKSGHGGKFTWEGPRDSIQNELFPAPAAIDENDPNYVDEVKEKEEEVAGLVVGEVE 124
            QPPPKSGHGGKFTWEGP D+I+NEL PAPAAIDENDPNYVDEV  KEEEVAGLVVGEVE
Sbjct: 66  AQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEV--KEEEVAGLVVGEVE 125

Query: 125 VAKAAEVTEGVGRVEVDPRLQLQ 141
           VAKAA VTEGV RVEVDPRLQLQ
Sbjct: 126 VAKAAAVTEGVARVEVDPRLQLQ 146

BLAST of CmoCh14G002550 vs. ExPASy TrEMBL
Match: A0A6J1J6Y7 (uncharacterized protein LOC111481791 OS=Cucurbita maxima OX=3661 GN=LOC111481791 PE=4 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 8.0e-52
Identity = 116/143 (81.12%), Postives = 123/143 (86.01%), Query Frame = 0

Query: 5   DGKEKVTIRDVSHDEEGIKLIEKAKIDSRNIDTIRYVERKLIDKGFQRLERQPV------ 64
           D KEKVTIR VS DEEG K +EKA+I SRNIDTI+YVE+KLIDKG QRL+R PV      
Sbjct: 6   DKKEKVTIRAVSRDEEGKKRVEKAEIVSRNIDTIKYVEKKLIDKGVQRLDRHPVHTRTGI 65

Query: 65  -QPPPKSGHGGKFTWEGPRDSIQNELFPAPAAIDENDPNYVDEVKEKEEEVAGLVVGEVE 124
            QPPPKSGHGGKFTWEGP D+I+NEL PAPAAIDENDPNYVDEVKE EEEVAGLVVGEVE
Sbjct: 66  AQPPPKSGHGGKFTWEGPSDAIENELSPAPAAIDENDPNYVDEVKE-EEEVAGLVVGEVE 125

Query: 125 VAKAAEVTEGVGRVEVDPRLQLQ 141
           VAKAA VTEGV RVEVDPRLQLQ
Sbjct: 126 VAKAAAVTEGVARVEVDPRLQLQ 147

BLAST of CmoCh14G002550 vs. ExPASy TrEMBL
Match: A0A5A7TM42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003410 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 3.8e-46
Identity = 108/148 (72.97%), Postives = 120/148 (81.08%), Query Frame = 0

Query: 1   MEAID-GKEKVTIRDVSHDEEGIKLIEKAKIDSRNIDTIRYVERKLIDKGFQRLERQPV- 60
           M+ ID  K+KVTIR V+ DEEG K IEKA+I+S NIDTI+Y+E+KLIDKG QRLER PV 
Sbjct: 1   MKPIDEKKDKVTIRAVTRDEEGKKHIEKAEIESHNIDTIKYIEKKLIDKGVQRLERHPVH 60

Query: 61  ------QPPPKSGHGGKFTWEGPRDSIQNELFPAPAAIDENDPNYVDEVKEKEEEVAGLV 120
                 QPPPKSG GGKFTWEGP D+I+NEL PAP AIDE DPNYVDEVKE+EEEVAGLV
Sbjct: 61  GHTGIAQPPPKSGRGGKFTWEGPGDAIENELSPAPPAIDEKDPNYVDEVKEEEEEVAGLV 120

Query: 121 VGEVEVAKAAEVTEGVGRVEVDPRLQLQ 141
           VGEVEV  AA   EGV RVEVDP+LQLQ
Sbjct: 121 VGEVEVPAAA--PEGVSRVEVDPQLQLQ 146

BLAST of CmoCh14G002550 vs. TAIR 10
Match: AT3G10020.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 47 Blast hits to 47 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 118.6 bits (296), Expect = 4.0e-27
Identity = 72/139 (51.80%), Postives = 93/139 (66.91%), Query Frame = 0

Query: 7   KEKVTIRDVSHDEEGIKLIEKAKIDSRNIDTIRYVERKLIDKGFQRLERQPV------QP 66
           K  V +R    +EEG K ++K ++ +RN +TI+ VERKL++KG QR++R P       +P
Sbjct: 10  KNTVVLRAEHKNEEGRKSVDKFEVKTRNPETIKSVERKLMEKGVQRMDRHPSDGIPLRRP 69

Query: 67  PPKSGHGGKFTWEGPRDSIQNELFPAPAAIDENDPNYVDE-VKEKEEEVA-GLVVGEVEV 126
           P KSGHGGK+TWEGP      E+ P P A+DE DPNY +E VK+  ++VA  LV GEVEV
Sbjct: 70  PSKSGHGGKYTWEGPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAVELVKGEVEV 129

Query: 127 AKAAEVTEGVGRVEVDPRL 138
           AK  E   GV RVEVDPRL
Sbjct: 130 AK--EAPAGVARVEVDPRL 146

BLAST of CmoCh14G002550 vs. TAIR 10
Match: AT3G10020.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress, anaerobic respiration; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 99.8 bits (247), Expect = 1.9e-21
Identity = 58/119 (48.74%), Postives = 79/119 (66.39%), Query Frame = 0

Query: 7   KEKVTIRDVSHDEEGIKLIEKAKIDSRNIDTIRYVERKLIDKGFQRLERQPV------QP 66
           K  V +R    +EEG K ++K ++ +RN +TI+ VERKL++KG QR++R P       +P
Sbjct: 10  KNTVVLRAEHKNEEGRKSVDKFEVKTRNPETIKSVERKLMEKGVQRMDRHPSDGIPLRRP 69

Query: 67  PPKSGHGGKFTWEGPRDSIQNELFPAPAAIDENDPNYVDE-VKEKEEEVA-GLVVGEVE 118
           P KSGHGGK+TWEGP      E+ P P A+DE DPNY +E VK+  ++VA  LV GEVE
Sbjct: 70  PSKSGHGGKYTWEGPDRMEDYEMQPDPPAMDEGDPNYDEEQVKKSGDDVAVELVKGEVE 128

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1F3B23.8e-70100.00uncharacterized protein LOC111441751 OS=Cucurbita moschata OX=3662 GN=LOC1114417... [more]
A0A6J1J5N92.7e-6096.88uncharacterized protein LOC111481977 OS=Cucurbita maxima OX=3661 GN=LOC111481977... [more]
A0A6J1F9T76.1e-5280.42uncharacterized protein LOC111442115 OS=Cucurbita moschata OX=3662 GN=LOC1114421... [more]
A0A6J1J6Y78.0e-5281.12uncharacterized protein LOC111481791 OS=Cucurbita maxima OX=3661 GN=LOC111481791... [more]
A0A5A7TM423.8e-4672.97Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT3G10020.14.0e-2751.80unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
AT3G10020.21.9e-2148.74unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response... [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 52..77

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G002550.1CmoCh14G002550.1mRNA