CmoCh14G002280 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G002280
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ras-related protein RABC2a-like
Location	Cmo_Chr14: 1048038 .. 1050127 (-)
RNA-Seq Expression	CmoCh14G002280
Synteny	CmoCh14G002280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAACAGCGAGCCAAAGCAGTAGAGTTGGGACAAAAACATGGAATTCCCATAAAAGAAAGGGTATAATAGAGACAATAACATTACATTTCATCTAAGAAAAGAAAAAGGGGAAGGGCAAAGAACAAATACGTTGTCGTCTCACCTGGTGCTCACTTAGCCGTTTTCTTGGAACTTCTTCCTTCTTCCCTGTTTTCTTACATAAACAAACATGGCACCCAATAGAATTTTGTAATCCCATTTTTCTGTTCTTTCATTTGGATCATCAAAATGGGATCCTCTTCCGGCCAGAGCAGCAATTACGATCTGTCGTTTAAGGTTTTGTTGATCGGCGATTCGGGTGTCGGCAAAAGTAGTCTTCTTCTCAGCTTCATCTCTACTAATCTTGAAAATCTTGCCCCTACTATTGGTATGTTTTGTTTTGCCACAACAACCAAACCCCACTTTTTCTTTTACATACAAGAAGCGCATGAAGGAAAAAGATGAACAGGACATGCCCTTCTCATCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTTGTGGTGCTTTGGTTTCTGCGTTTGGATCTGTTTTGTTCTTTTTTTTAACAGTTTGTTTGTTTTTAGGTGTGGATTTTAAGATCAAGCTGCTTAAGGTGGGTGGGAAGAGATTGAAGCTGACAATCTGGGACACTGGTAATGATTAAGCTTTAAAGGGTTCTTTTATCTGCCATTTTTGGTTCAAATTCTGGAGATTTTCACTTCGTTTTGTATCTGAACTTGTAAGAACTTAATTTGGACCTATACTCCAAATTTTATCTCTGCTCGAACAGTCTCTCTTTTGTTGTTCCTGTCTAAATGATTTGGGAAGAAGAAAGTTTGCCAAAGTCATTGGAATCTCAATTGTTTCACTGTTTCCAATAGCTTTTCACTTCAGATGGATTGATTTTGAACTTGTTTAAGCCTTGGTTTCTTGCAGCTGGACAAGAGAGATTCAGAACATTAACCAGCTCCTACTATAGAGGTGCCCAAGGGATCATTCTTGGTAAGGCCAATGCTGAAGGATGTTTCACTGACATTTTGTGTTGTCTTCTGAGCTAATGTTTCTCTGGGTTATGTGGTGTTCATTTATCCTGAAATGTTCATTATCTTGTTGTAGTCTATGATGTCACACGGAGAGAAACGTTCGAGAACTTATCCGACGTATGGGCTAAAGAAGTGGAACTCTACTCGACGAATAAGGACTGTGTCAAGATGCTTATTGGTAATAAGGTTGACAGAGTAAGTTTGCTTCTTTCTCTGGTGTTCTAGAGAACACTTCTAAGTTGAACACCTGCATTTTTGAACGATAATCGACAAACGCTCTTTACGAATAGCGATAATCGTTTAGGGAATGTTTCTAAGCTCTATGGTATTCAGCTTGAAAAATGATAGAAGTTCATGTGTGATGAACATAGGAATCTGAAAGGGCTGTGAGCAGAGAGGAGGGGGCTGCTCTAGCAAAAGAGCTTGGATCCCATTTCCTTGAATGCAGCGCTAAAACCAGAGAGAATGTGGAGAAATGCTTTGAAGAGTTGGCATTGAAGGTAGATATCTATCAAACCAATTTCGAGTACTAACCTCGAGAAATCAATCGCCTCGATCGATGTATGAACCTTTGTTTTTTGGTGGTACAGATCATGGAGGCTCCTAGTCTAATTGAACAGGGTTCCACTGTTGTCAAAAGAAACATTCTGAAGCAGCAGGAATTCCAGGCTGCATCAACAACAGGTTGCTGCCTCTGAAAACTCGAGCACCAAACATATAGAATGATTCTCCTTTATCCACAGTTTCTGTACATGTCTCCTACTGCTTCTCCTTGTCATTGAGTTGTTTGTTTGCTTGAATGACTGTAATTGGGAGTTGAAAAAGAAAGCCAAATACATCAAACCATCCACTTATGTAATTTTTCTTCTTCTTCCAGTTTCTCTTCCCATTCTTTGGATTGTTTGGCATGGTATTGTACCTATCTATACTAACAAATTCGGCTTGTATCATATGTTCAAACACATTATTCACTCGATGTATCACAATTCTACATCTAAATAACTAAATATTTACATCGAGTTTATGAGATC

mRNA sequence

AAACAGCGAGCCAAAGCAGTAGAGTTGGGACAAAAACATGGAATTCCCATAAAAGAAAGGGTATAATAGAGACAATAACATTACATTTCATCTAAGAAAAGAAAAAGGGGAAGGGCAAAGAACAAATACGTTGTCGTCTCACCTGGTGCTCACTTAGCCGTTTTCTTGGAACTTCTTCCTTCTTCCCTGTTTTCTTACATAAACAAACATGGCACCCAATAGAATTTTGTAATCCCATTTTTCTGTTCTTTCATTTGGATCATCAAAATGGGATCCTCTTCCGGCCAGAGCAGCAATTACGATCTGTCGTTTAAGGTTTTGTTGATCGGCGATTCGGGTGTCGGCAAAAGTAGTCTTCTTCTCAGCTTCATCTCTACTAATCTTGAAAATCTTGCCCCTACTATTGGTGTGGATTTTAAGATCAAGCTGCTTAAGGTGGGTGGGAAGAGATTGAAGCTGACAATCTGGGACACTGCTGGACAAGAGAGATTCAGAACATTAACCAGCTCCTACTATAGAGGTGCCCAAGGGATCATTCTTGTCTATGATGTCACACGGAGAGAAACGTTCGAGAACTTATCCGACGTATGGGCTAAAGAAGTGGAACTCTACTCGACGAATAAGGACTGTGTCAAGATGCTTATTGGTAATAAGGTTGACAGAGAATCTGAAAGGGCTGTGAGCAGAGAGGAGGGGGCTGCTCTAGCAAAAGAGCTTGGATCCCATTTCCTTGAATGCAGCGCTAAAACCAGAGAGAATGTGGAGAAATGCTTTGAAGAGTTGGCATTGAAGATCATGGAGGCTCCTAGTCTAATTGAACAGGGTTCCACTGTTGTCAAAAGAAACATTCTGAAGCAGCAGGAATTCCAGGCTGCATCAACAACAGGTTGCTGCCTCTGAAAACTCGAGCACCAAACATATAGAATGATTCTCCTTTATCCACAGTTTCTGTACATGTCTCCTACTGCTTCTCCTTGTCATTGAGTTGTTTGTTTGCTTGAATGACTGTAATTGGGAGTTGAAAAAGAAAGCCAAATACATCAAACCATCCACTTATGTAATTTTTCTTCTTCTTCCAGTTTCTCTTCCCATTCTTTGGATTGTTTGGCATGGTATTGTACCTATCTATACTAACAAATTCGGCTTGTATCATATGTTCAAACACATTATTCACTCGATGTATCACAATTCTACATCTAAATAACTAAATATTTACATCGAGTTTATGAGATC

Coding sequence (CDS)

ATGGGATCCTCTTCCGGCCAGAGCAGCAATTACGATCTGTCGTTTAAGGTTTTGTTGATCGGCGATTCGGGTGTCGGCAAAAGTAGTCTTCTTCTCAGCTTCATCTCTACTAATCTTGAAAATCTTGCCCCTACTATTGGTGTGGATTTTAAGATCAAGCTGCTTAAGGTGGGTGGGAAGAGATTGAAGCTGACAATCTGGGACACTGCTGGACAAGAGAGATTCAGAACATTAACCAGCTCCTACTATAGAGGTGCCCAAGGGATCATTCTTGTCTATGATGTCACACGGAGAGAAACGTTCGAGAACTTATCCGACGTATGGGCTAAAGAAGTGGAACTCTACTCGACGAATAAGGACTGTGTCAAGATGCTTATTGGTAATAAGGTTGACAGAGAATCTGAAAGGGCTGTGAGCAGAGAGGAGGGGGCTGCTCTAGCAAAAGAGCTTGGATCCCATTTCCTTGAATGCAGCGCTAAAACCAGAGAGAATGTGGAGAAATGCTTTGAAGAGTTGGCATTGAAGATCATGGAGGCTCCTAGTCTAATTGAACAGGGTTCCACTGTTGTCAAAAGAAACATTCTGAAGCAGCAGGAATTCCAGGCTGCATCAACAACAGGTTGCTGCCTCTGA

Protein sequence

MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGKRLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKDCVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAPSLIEQGSTVVKRNILKQQEFQAASTTGCCL

Homology

[Close]

BLAST of CmoCh14G002280 vs. ExPASy Swiss-Prot
Match: O49841 (Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1)

HSP 1 Score: 334.3 bits (856), Expect = 9.7e-91
Identity = 171/210 (81.43%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQ S YDLSFK+LLIGDSGVGKSSLL+SFIS+++E+LAPTIGVDFKIK L VGGK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETF NL DVW KE+ELYSTN++
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQE 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           CV+ML+GNKVDRESER VSREEG ALAKEL   FLECSA+TR+NVE+CFEELALKIME P
Sbjct: 121 CVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVP 180

Query: 181 SLIEQGSTVVKRNILKQQ-EFQAASTTGCC 210
           SL+E+GS+ VKRNILKQ+ E Q  + +GCC
Sbjct: 181 SLLEEGSSAVKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of CmoCh14G002280 vs. ExPASy Swiss-Prot
Match: Q9SF92 (Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1)

HSP 1 Score: 307.8 bits (787), Expect = 9.7e-83
Identity = 156/192 (81.25%), Postives = 176/192 (91.67%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQ S YDLSFK+LLIGDSGVGKSSLLLSFIS+++E+LAPTIGVDFKIK +KV GK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           RLKLTIWDTAGQE+FRTLTSSY+RG+QGIILVYDVT+RETF NL+D+WAKE+ELYSTN D
Sbjct: 61  RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           C+KML+GNKVDRESER VSREEG ALAK+L   F ECSA+TRENV  CFEELALKIME P
Sbjct: 121 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 180

Query: 181 SLIEQGSTVVKR 193
           SL+E+GS+ VKR
Sbjct: 181 SLLEEGSSSVKR 191

[Close]

BLAST of CmoCh14G002280 vs. ExPASy Swiss-Prot
Match: O23657 (Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1)

HSP 1 Score: 297.0 bits (759), Expect = 1.7e-79
Identity = 150/211 (71.09%), Postives = 175/211 (82.94%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQ   +D  FKVLLIGDSGVGKSSLLLSF S   ++L+PTIGVDFK+K L +G K
Sbjct: 1   MGSSSGQ-PEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           +LKL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TF NLSD+WAKE++LYSTN+D
Sbjct: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQD 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           C+KML+GNKVD+ESERAVS++EG   A+E G  FLECSAKTR NVE+CFEEL LKI+E P
Sbjct: 121 CIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 180

Query: 181 SLIEQGSTVVKRNILKQQEFQAASTTG--CC 210
           SL  +GS+  K+NI KQ   Q  ST+   CC
Sbjct: 181 SLTAEGSSGGKKNIFKQNPAQTTSTSSSYCC 210

[Close]

BLAST of CmoCh14G002280 vs. ExPASy Swiss-Prot
Match: P36862 (GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 4.9e-50
Identity = 103/176 (58.52%), Postives = 128/176 (72.73%), Query Frame = 0


Query: 10  NYDLSFKVLLIGDSGVGKSSLLLSFISTNL-ENLAPTIGVDFKIKLLKVGGKRLKLTIWD 69
           ++D +FKVLL+GDSGVGKS +L  F S    E+   TIGVDFK+K L   GKR KLTIWD
Sbjct: 5   SHDYTFKVLLVGDSGVGKSCILTRFTSGIFEESTTSTIGVDFKVKYLTADGKRCKLTIWD 64

Query: 70  TAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKDCVKMLIGN 129
           TAGQERFRTLTSSYYRGAQGII VYDVTRR+TFE+L   W +E ++YST +  +KM++ N
Sbjct: 65  TAGQERFRTLTSSYYRGAQGIIFVYDVTRRDTFESLEANWMREFDIYSTVESAIKMVVAN 124

Query: 130 KVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAPSLIE 185
           KVD  ++R VS EEG   A+  G  F+E SA+    V + FEEL LKI++ P L+E
Sbjct: 125 KVDLSAQRQVSSEEGHDFARRHGCLFVETSARANLAVGQAFEELLLKILDTPLLLE 180

[Close]

BLAST of CmoCh14G002280 vs. ExPASy Swiss-Prot
Match: Q6DHC1 (Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 1.0e-47
Identity = 99/172 (57.56%), Postives = 124/172 (72.09%), Query Frame = 0


Query: 14  SFKVLLIGDSGVGKSSLLLSFISTNLE-NLAPTIGVDFKIKLLKVGGKRLKLTIWDTAGQ 73
           + K+L+IG+SGVGKSSLLL F     +  LA TIGVDFK+K + + G R KL IWDTAGQ
Sbjct: 8   TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTIAIDGNRAKLAIWDTAGQ 67

Query: 74  ERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKDCVKMLIGNKVDR 133
           ERFRTLT SYYRGAQG+ILVYDVT+R+TF  L + W  E+E Y T  D VKML+GNK+D+
Sbjct: 68  ERFRTLTPSYYRGAQGVILVYDVTKRDTFTKLEN-WLNELETYCTRNDLVKMLVGNKIDK 127

Query: 134 ESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAPSLIE 185
           ++ R V R EG   A++    F+E SAKTR+ V+  FEEL  KI++ P L E
Sbjct: 128 DN-REVDRNEGLKFARKHSMLFIEASAKTRDGVQCAFEELVEKILQTPGLWE 177

[Close]

BLAST of CmoCh14G002280 vs. ExPASy TrEMBL
Match: A0A6J1F705 (ras-related protein RABC2a-like OS=Cucurbita moschata OX=3662 GN=LOC111441441 PE=4 SV=1)

HSP 1 Score: 407.9 bits (1047), Expect = 2.5e-110
Identity = 210/210 (100.00%), Postives = 210/210 (100.00%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK
Sbjct: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP
Sbjct: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180

Query: 181 SLIEQGSTVVKRNILKQQEFQAASTTGCCL 211
           SLIEQGSTVVKRNILKQQEFQAASTTGCCL
Sbjct: 181 SLIEQGSTVVKRNILKQQEFQAASTTGCCL 210

[Close]

BLAST of CmoCh14G002280 vs. ExPASy TrEMBL
Match: A0A6J1J6U0 (ras-related protein RABC2a-like OS=Cucurbita maxima OX=3661 GN=LOC111481753 PE=4 SV=1)

HSP 1 Score: 404.8 bits (1039), Expect = 2.2e-109
Identity = 208/210 (99.05%), Postives = 209/210 (99.52%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQS+NYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK
Sbjct: 1   MGSSSGQSTNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           RLKLTIWDTAGQERFRTL SSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD
Sbjct: 61  RLKLTIWDTAGQERFRTLNSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP
Sbjct: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180

Query: 181 SLIEQGSTVVKRNILKQQEFQAASTTGCCL 211
           SLIEQGSTVVKRNILKQQEFQAASTTGCCL
Sbjct: 181 SLIEQGSTVVKRNILKQQEFQAASTTGCCL 210

[Close]

BLAST of CmoCh14G002280 vs. ExPASy TrEMBL
Match: A0A0A0LGE4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G743430 PE=4 SV=1)

HSP 1 Score: 389.0 bits (998), Expect = 1.2e-104
Identity = 200/210 (95.24%), Postives = 204/210 (97.14%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTN +NLAPTIGVDFKIKLLKVGGK
Sbjct: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNADNLAPTIGVDFKIKLLKVGGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETF NLSDVWAKEVELYSTNKD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKD 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           CVKMLIGNKVDRESERAVSREEG ALAK LGS+FLECSAKTRENVEKCFE+LALKIMEAP
Sbjct: 121 CVKMLIGNKVDRESERAVSREEGIALAKVLGSYFLECSAKTRENVEKCFEDLALKIMEAP 180

Query: 181 SLIEQGSTVVKRNILKQQEFQAASTTGCCL 211
           SLIE+GSTVVKRNILKQQEFQ ASTT CCL
Sbjct: 181 SLIEEGSTVVKRNILKQQEFQPASTTSCCL 210

[Close]

BLAST of CmoCh14G002280 vs. ExPASy TrEMBL
Match: A0A5A7TKX7 (Ras-related protein RABC2a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002940 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.1e-104
Identity = 201/210 (95.71%), Postives = 203/210 (96.67%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTN +NLAPTIGVDFKIKLLKVGGK
Sbjct: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNADNLAPTIGVDFKIKLLKVGGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETF NLSDVWAKEVELYSTNKD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKD 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           CVKMLIGNKVDRESERAVSREEG ALAK LGS FLECSAKTRENVEKCFEELALKIMEAP
Sbjct: 121 CVKMLIGNKVDRESERAVSREEGIALAKVLGSCFLECSAKTRENVEKCFEELALKIMEAP 180

Query: 181 SLIEQGSTVVKRNILKQQEFQAASTTGCCL 211
           SLIE+GSTVVKRNILKQQEFQ ASTT CCL
Sbjct: 181 SLIEEGSTVVKRNILKQQEFQPASTTSCCL 210

[Close]

BLAST of CmoCh14G002280 vs. ExPASy TrEMBL
Match: A0A1S3B6E7 (ras-related protein RABC2a OS=Cucumis melo OX=3656 GN=LOC103486521 PE=4 SV=1)

HSP 1 Score: 388.3 bits (996), Expect = 2.1e-104
Identity = 201/210 (95.71%), Postives = 203/210 (96.67%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTN +NLAPTIGVDFKIKLLKVGGK
Sbjct: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNADNLAPTIGVDFKIKLLKVGGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETF NLSDVWAKEVELYSTNKD
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLSDVWAKEVELYSTNKD 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           CVKMLIGNKVDRESERAVSREEG ALAK LGS FLECSAKTRENVEKCFEELALKIMEAP
Sbjct: 121 CVKMLIGNKVDRESERAVSREEGIALAKVLGSCFLECSAKTRENVEKCFEELALKIMEAP 180

Query: 181 SLIEQGSTVVKRNILKQQEFQAASTTGCCL 211
           SLIE+GSTVVKRNILKQQEFQ ASTT CCL
Sbjct: 181 SLIEEGSTVVKRNILKQQEFQPASTTSCCL 210

[Close]

BLAST of CmoCh14G002280 vs. TAIR 10
Match: AT5G03530.1 (RAB GTPase homolog C2A )

HSP 1 Score: 334.3 bits (856), Expect = 6.9e-92
Identity = 171/210 (81.43%), Postives = 191/210 (90.95%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQ S YDLSFK+LLIGDSGVGKSSLL+SFIS+++E+LAPTIGVDFKIK L VGGK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVGGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETF NL DVW KE+ELYSTN++
Sbjct: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFTNLVDVWGKEIELYSTNQE 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           CV+ML+GNKVDRESER VSREEG ALAKEL   FLECSA+TR+NVE+CFEELALKIME P
Sbjct: 121 CVRMLVGNKVDRESERGVSREEGIALAKELNCMFLECSARTRQNVEQCFEELALKIMEVP 180

Query: 181 SLIEQGSTVVKRNILKQQ-EFQAASTTGCC 210
           SL+E+GS+ VKRNILKQ+ E Q  + +GCC
Sbjct: 181 SLLEEGSSAVKRNILKQKPEHQTNTQSGCC 209

[Close]

BLAST of CmoCh14G002280 vs. TAIR 10
Match: AT3G09910.1 (RAB GTPase homolog C2B )

HSP 1 Score: 307.8 bits (787), Expect = 6.9e-84
Identity = 156/192 (81.25%), Postives = 176/192 (91.67%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQ S YDLSFK+LLIGDSGVGKSSLLLSFIS+++E+LAPTIGVDFKIK +KV GK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           RLKLTIWDTAGQE+FRTLTSSY+RG+QGIILVYDVT+RETF NL+D+WAKE+ELYSTN D
Sbjct: 61  RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           C+KML+GNKVDRESER VSREEG ALAK+L   F ECSA+TRENV  CFEELALKIME P
Sbjct: 121 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 180

Query: 181 SLIEQGSTVVKR 193
           SL+E+GS+ VKR
Sbjct: 181 SLLEEGSSSVKR 191

[Close]

BLAST of CmoCh14G002280 vs. TAIR 10
Match: AT3G09910.2 (RAB GTPase homolog C2B )

HSP 1 Score: 307.8 bits (787), Expect = 6.9e-84
Identity = 156/192 (81.25%), Postives = 176/192 (91.67%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQ S YDLSFK+LLIGDSGVGKSSLLLSFIS+++E+LAPTIGVDFKIK +KV GK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           RLKLTIWDTAGQE+FRTLTSSY+RG+QGIILVYDVT+RETF NL+D+WAKE+ELYSTN D
Sbjct: 61  RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           C+KML+GNKVDRESER VSREEG ALAK+L   F ECSA+TRENV  CFEELALKIME P
Sbjct: 121 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 180

Query: 181 SLIEQGSTVVKR 193
           SL+E+GS+ VKR
Sbjct: 181 SLLEEGSSSVKR 191

[Close]

BLAST of CmoCh14G002280 vs. TAIR 10
Match: AT3G09910.3 (RAB GTPase homolog C2B )

HSP 1 Score: 307.8 bits (787), Expect = 6.9e-84
Identity = 156/192 (81.25%), Postives = 176/192 (91.67%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQ S YDLSFK+LLIGDSGVGKSSLLLSFIS+++E+LAPTIGVDFKIK +KV GK
Sbjct: 1   MGSSSGQ-SGYDLSFKILLIGDSGVGKSSLLLSFISSSVEDLAPTIGVDFKIKQMKVRGK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           RLKLTIWDTAGQE+FRTLTSSY+RG+QGIILVYDVT+RETF NL+D+WAKE+ELYSTN D
Sbjct: 61  RLKLTIWDTAGQEKFRTLTSSYFRGSQGIILVYDVTKRETFLNLADIWAKEIELYSTNHD 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           C+KML+GNKVDRESER VSREEG ALAK+L   F ECSA+TRENV  CFEELALKIME P
Sbjct: 121 CIKMLVGNKVDRESERKVSREEGMALAKDLNCLFHECSARTRENVNGCFEELALKIMEVP 180

Query: 181 SLIEQGSTVVKR 193
           SL+E+GS+ VKR
Sbjct: 181 SLLEEGSSSVKR 191

[Close]

BLAST of CmoCh14G002280 vs. TAIR 10
Match: AT1G43890.1 (RAB GTPASE HOMOLOG B18 )

HSP 1 Score: 297.0 bits (759), Expect = 1.2e-80
Identity = 150/211 (71.09%), Postives = 175/211 (82.94%), Query Frame = 0


Query: 1   MGSSSGQSSNYDLSFKVLLIGDSGVGKSSLLLSFISTNLENLAPTIGVDFKIKLLKVGGK 60
           MGSSSGQ   +D  FKVLLIGDSGVGKSSLLLSF S   ++L+PTIGVDFK+K L +G K
Sbjct: 1   MGSSSGQ-PEFDYLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPTIGVDFKVKYLTIGEK 60

Query: 61  RLKLTIWDTAGQERFRTLTSSYYRGAQGIILVYDVTRRETFENLSDVWAKEVELYSTNKD 120
           +LKL IWDTAGQERFRTLTSSYYRGAQGII+VYDVTRR+TF NLSD+WAKE++LYSTN+D
Sbjct: 61  KLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQD 120

Query: 121 CVKMLIGNKVDRESERAVSREEGAALAKELGSHFLECSAKTRENVEKCFEELALKIMEAP 180
           C+KML+GNKVD+ESERAVS++EG   A+E G  FLECSAKTR NVE+CFEEL LKI+E P
Sbjct: 121 CIKMLVGNKVDKESERAVSKKEGIDFAREYGCLFLECSAKTRVNVEQCFEELVLKILETP 180

Query: 181 SLIEQGSTVVKRNILKQQEFQAASTTG--CC 210
           SL  +GS+  K+NI KQ   Q  ST+   CC
Sbjct: 181 SLTAEGSSGGKKNIFKQNPAQTTSTSSSYCC 210

The following BLAST results are available for this feature:

BLAST of CmoCh14G002280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O49841	9.7e-91	81.43	Ras-related protein RABC2a OS=Arabidopsis thaliana OX=3702 GN=RABC2A PE=1 SV=1	[more]
Q9SF92	9.7e-83	81.25	Ras-related protein RABC2b OS=Arabidopsis thaliana OX=3702 GN=RABC2B PE=2 SV=1	[more]
O23657	1.7e-79	71.09	Ras-related protein RABC1 OS=Arabidopsis thaliana OX=3702 GN=RABC1 PE=1 SV=1	[more]
P36862	4.9e-50	58.52	GTP-binding protein yptV3 OS=Volvox carteri OX=3067 GN=YPTV3 PE=3 SV=1	[more]
Q6DHC1	1.0e-47	57.56	Ras-related protein Rab-18-B OS=Danio rerio OX=7955 GN=rab18b PE=2 SV=1	[more]

BLAST of CmoCh14G002280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F705	2.5e-110	100.00	ras-related protein RABC2a-like OS=Cucurbita moschata OX=3662 GN=LOC111441441 PE...	[more]
A0A6J1J6U0	2.2e-109	99.05	ras-related protein RABC2a-like OS=Cucurbita maxima OX=3661 GN=LOC111481753 PE=4...	[more]
A0A0A0LGE4	1.2e-104	95.24	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G743430 PE=4 SV=1	[more]
A0A5A7TKX7	2.1e-104	95.71	Ras-related protein RABC2a OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A1S3B6E7	2.1e-104	95.71	ras-related protein RABC2a OS=Cucumis melo OX=3656 GN=LOC103486521 PE=4 SV=1	[more]

BLAST of CmoCh14G002280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G03530.1	6.9e-92	81.43	RAB GTPase homolog C2A	[more]
AT3G09910.1	6.9e-84	81.25	RAB GTPase homolog C2B	[more]
AT3G09910.2	6.9e-84	81.25	RAB GTPase homolog C2B	[more]
AT3G09910.3	6.9e-84	81.25	RAB GTPase homolog C2B	[more]
AT1G43890.1	1.2e-80	71.09	RAB GTPASE HOMOLOG B18	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00449	RASTRNSFRMNG	coord: 37..53 score: 29.84 coord: 15..36 score: 52.24 coord: 55..77 score: 50.87 coord: 119..132 score: 40.01 coord: 154..176 score: 43.7
None	No IPR available	SMART	SM00176	ran_sub_2	coord: 20..210 e-value: 7.6E-5 score: 19.9
None	No IPR available	SMART	SM00175	rab_sub_5	coord: 15..179 e-value: 7.6E-94 score: 327.7
None	No IPR available	SMART	SM00173	ras_sub_4	coord: 12..179 e-value: 1.3E-30 score: 117.7
None	No IPR available	PANTHER	PTHR24073:SF1138	SMALL MONOMERIC GTPASE-RELATED	coord: 1..210
None	No IPR available	PANTHER	PTHR24073	DRAB5-RELATED	coord: 1..210
None	No IPR available	PROSITE	PS51420	RHO	coord: 8..179 score: 10.179581
None	No IPR available	PROSITE	PS51419	RAB	coord: 10..210 score: 32.733181
None	No IPR available	CDD	cd01863	Rab18	coord: 15..176 e-value: 1.90665E-96 score: 275.729
IPR001806	Small GTPase	SMART	SM00174	rho_sub_3	coord: 17..180 e-value: 7.3E-14 score: 57.2
IPR001806	Small GTPase	PFAM	PF00071	Ras	coord: 16..177 e-value: 2.6E-55 score: 186.4
IPR001806	Small GTPase	PROSITE	PS51421	RAS	coord: 7..210 score: 17.842752
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 5..206 e-value: 3.7E-64 score: 217.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..193
IPR005225	Small GTP-binding protein domain	TIGRFAM	TIGR00231	TIGR00231	coord: 15..171 e-value: 5.6E-28 score: 95.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G002280.1	CmoCh14G002280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0012505	endomembrane system
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding