CmoCh14G001910 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh14G001910
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionDNA-binding protein S1FA-like
LocationCmo_Chr14: 867327 .. 868898 (-)
RNA-Seq ExpressionCmoCh14G001910
SyntenyCmoCh14G001910
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CGGCCCATAGAAAGCGCAGGACCCGGGTGGACCAAATCGCCGATTTATATGAATCTTCCCGTTTTTCTTAGACCTCGCCGACAATTTGTTTTTCCGTCAACGCTTCACCGCTGATCCGATCTATATAATTGGCTTTATTCAGGATCTTCCTGCCGGCCGATCTGTCCGGCTCTGAGTTGTAGACATGGCTTCAGCCAATGGCAAGGTACGATTGACGAAGGAATCCCCCTTTGTTTCTTGCTTTTAGCGTTCAATTTCACGAGATCTGTGCTTTTTTTAAATTCCATTTCTGATTCCGTGTTCGAATTCCTTTTTCTTCGAATTGGTTGTTTGGATCGATCAGTATGGGTCGAGGCTCGTCTTTTTCTTCTTTTCTGAAACCTTGATTTCATCTGGTTGGGCGGTGCTGGTTTGAATCGGAACGTTGTTTTGTTGGCTGTAATTGTTTTGGATGAAATTTGAGTTTCTGGTTGTTTGGCGCTCGCATTGTAGGATCTGTAAATCTTGATTTTATGGGTGAAATTTATTTCTGGGGGAAAAATCTAGGGAAAGACGAACCCTAAAGGCGAATTGTCGTTTCAAAATGGGAAATGTCGAGCGATTGGGTTGGAAAATTGTGATTAAACTGCTTTGCAATGTCTGCATTCATCATTAAAGTTCGGATGATACTTGAAATTGTTATTACTTTTGTAGATAACTAATTTAAGATCGAAAGCGTGCTAGGTTTGAGAAATATGGTGAAGAGAAACCATTTTGGTTTATGCTTAGTGTTAAGATATAACTATGAACGAAACTGCCTATTGTAGGTGAATTATGAGTTCTCCATTTCTGAAAGCGCCTAATCAGTCATTCCTTCATTGGATCCATTCATAATATGAACAGGGAAATATGATATGGTGTGCTGTGTTCACCAAAATTGTTTGTGGCTCATTGTGATGGGTTATTAATTGTTGTTCTGCAAGTGAACAGGGCAATGTGATCAATGACGTTGAAGCAAAAGGATTGAATCCAGCGCTAATAGTTCTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCGTAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAGAAGCCAGTATCTAAAAAGAAGATGAAGAGGGACAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAAAAAACAACAGAAAAAGAGAAAATTTAGCTCCCCGAGGTTTCCTTCTCTGTAGAACGTTTTGATTCTCCAAATTTTCCTACATAGACTATCTTGAAAGTTGCTACAGGTATTTCCTATTTCTGCTGTCTTAAACTCTTCCGAAATCGAACTTGATCATGAGTTTCTTAACTCTTATTACATGGGCTCTTTTCTCTACGTGCCATTGACTCTTCACTACTTATGCCCATCTTCTCTTTTTTGCACACACCAGAAATATTTTTGTTTCTCCATTTTTGAACAGCCTTAGCTCAATTGCTTTTTACTGTTGGAATCCTTTTTCTTTTTTTTTTTTTGGACTGCAAATGTGAGATACAGTATTTATTAGTATTTATTAGTATTTATTAGTAT

mRNA sequence

CGGCCCATAGAAAGCGCAGGACCCGGGTGGACCAAATCGCCGATTTATATGAATCTTCCCGTTTTTCTTAGACCTCGCCGACAATTTGTTTTTCCGTCAACGCTTCACCGCTGATCCGATCTATATAATTGGCTTTATTCAGGATCTTCCTGCCGGCCGATCTGTCCGGCTCTGAGTTGTAGACATGGCTTCAGCCAATGGCAAGGGCAATGTGATCAATGACGTTGAAGCAAAAGGATTGAATCCAGCGCTAATAGTTCTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCGTAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAGAAGCCAGTATCTAAAAAGAAGATGAAGAGGGACAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAAAAAACAACAGAAAAAGAGAAAATTTAGCTCCCCGAGGTTTCCTTCTCTGTAGAACGTTTTGATTCTCCAAATTTTCCTACATAGACTATCTTGAAAGTTGCTACAGGTATTTCCTATTTCTGCTGTCTTAAACTCTTCCGAAATCGAACTTGATCATGAGTTTCTTAACTCTTATTACATGGGCTCTTTTCTCTACGTGCCATTGACTCTTCACTACTTATGCCCATCTTCTCTTTTTTGCACACACCAGAAATATTTTTGTTTCTCCATTTTTGAACAGCCTTAGCTCAATTGCTTTTTACTGTTGGAATCCTTTTTCTTTTTTTTTTTTTGGACTGCAAATGTGAGATACAGTATTTATTAGTATTTATTAGTATTTATTAGTAT

Coding sequence (CDS)

ATGGCTTCAGCCAATGGCAAGGGCAATGTGATCAATGACGTTGAAGCAAAAGGATTGAATCCAGCGCTAATAGTTCTTCTTCTTGTTGGTGGGTTGCTGCTGATTTTCCTCGTAGGGAACTATGCACTTTACTTGTATGCACAGAAGAATCTCCCTCCCAAGAAGAAGAAGCCAGTATCTAAAAAGAAGATGAAGAGGGACAGACTGAAGCAAGGAGTGTCTGCACCTGGAGAGTAA

Protein sequence

MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRDRLKQGVSAPGE
Homology
[Close]
BLAST of CmoCh14G001910 vs. ExPASy Swiss-Prot
Match: P42552 (DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 8.4e-24
Identity = 55/68 (80.88%), Postives = 63/68 (92.65%), Query Frame = 0 

Query: 11 INDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRDRLK 70
          +N+VEAKGLNP LIVLL++GGLLL FLVGN+ LY YAQKNLPPKKKKP+SKKKMKR+RLK
Sbjct: 3  VNEVEAKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPKKKKPISKKKMKRERLK 62

Query: 71 QGVSAPGE 79
          QGV+ PGE
Sbjct: 63 QGVAPPGE 70

[Close]
BLAST of CmoCh14G001910 vs. ExPASy Swiss-Prot
Match: P42551 (DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 8.7e-21
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 15 EAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRDRLKQGVS 74
          EAKGLNP LIVLL+VGG LL+FL+ NY LY+YAQKNLPP+KKKPVSKKK+KR++LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVP 72

Query: 75 APGE 79
           PGE
Sbjct: 73 VPGE 76

[Close]
BLAST of CmoCh14G001910 vs. ExPASy Swiss-Prot
Match: Q42337 (DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 100.5 bits (249), Expect = 8.7e-21
Identity = 51/78 (65.38%), Postives = 64/78 (82.05%), Query Frame = 0 

Query: 1  MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          M+S    G  +  VEAKGLNP LIVLL++GGLL+ FL+ NY +Y+YAQKNLPP+KKKP+S
Sbjct: 1  MSSDGSAGKAV--VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLS 60

Query: 61 KKKMKRDRLKQGVSAPGE 79
          KKK+KR++LKQGV  PGE
Sbjct: 61 KKKLKREKLKQGVPVPGE 76

[Close]
BLAST of CmoCh14G001910 vs. ExPASy Swiss-Prot
Match: Q93VI0 (DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 8.7e-21
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 0 

Query: 14 VEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRDRLKQGV 73
          +E+KGLNP LIVLL++GGLLL FLVGN+ LY YAQKNLPP+KKKPVSKKKMK++++KQGV
Sbjct: 9  IESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGV 68

Query: 74 SAPGE 79
            PGE
Sbjct: 69 QVPGE 73

[Close]
BLAST of CmoCh14G001910 vs. ExPASy Swiss-Prot
Match: Q7XLX6 (DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 1.9e-20
Identity = 51/75 (68.00%), Postives = 62/75 (82.67%), Query Frame = 0 

Query: 4  ANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKK 63
          A+   NV+ +   KGLNP +IVL++V   LL+F VGNYALY+YAQK LPP+KKKPVSKKK
Sbjct: 6  ADSANNVVIEEVNKGLNPGMIVLIVVATFLLLFFVGNYALYVYAQKTLPPRKKKPVSKKK 65

Query: 64 MKRDRLKQGVSAPGE 79
          MKR++LKQGVSAPGE
Sbjct: 66 MKREKLKQGVSAPGE 80

[Close]
BLAST of CmoCh14G001910 vs. ExPASy TrEMBL
Match: A0A6J1IZV9 (DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111482175 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.9e-32
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRDRLKQGVSAPGE 79
          KKKMKRDRLKQGVSAPGE
Sbjct: 61 KKKMKRDRLKQGVSAPGE 78

[Close]
BLAST of CmoCh14G001910 vs. ExPASy TrEMBL
Match: A0A6J1F6J1 (DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111441328 PE=3 SV=1)

HSP 1 Score: 146.7 bits (369), Expect = 3.9e-32
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRDRLKQGVSAPGE 79
          KKKMKRDRLKQGVSAPGE
Sbjct: 61 KKKMKRDRLKQGVSAPGE 78

[Close]
BLAST of CmoCh14G001910 vs. ExPASy TrEMBL
Match: A0A0A0LAW3 (DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_3G736950 PE=3 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 4.3e-31
Identity = 75/78 (96.15%), Postives = 77/78 (98.72%), Query Frame = 0 

Query: 1  MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVIND+EAKG NPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDIEAKGFNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRDRLKQGVSAPGE 79
          KKKMKR+RLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]
BLAST of CmoCh14G001910 vs. ExPASy TrEMBL
Match: A0A1S3B680 (DNA-binding protein S1FA-like OS=Cucumis melo OX=3656 GN=LOC103486467 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 1.3e-30
Identity = 75/78 (96.15%), Postives = 76/78 (97.44%), Query Frame = 0 

Query: 1  MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNVINDVEAKG NPALIVLLLVGGLLL FLVGNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVINDVEAKGFNPALIVLLLVGGLLLTFLVGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRDRLKQGVSAPGE 79
          KKKMKR+RLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]
BLAST of CmoCh14G001910 vs. ExPASy TrEMBL
Match: A0A6J1KWU8 (DNA-binding protein S1FA-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498311 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 71/78 (91.03%), Postives = 75/78 (96.15%), Query Frame = 0 

Query: 1  MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          MASANGKGNV+NDV AKG NP L+VLLLVGGLLLIFL+GNYALYLYAQKNLPPKKKKPVS
Sbjct: 1  MASANGKGNVMNDVAAKGFNPGLMVLLLVGGLLLIFLIGNYALYLYAQKNLPPKKKKPVS 60

Query: 61 KKKMKRDRLKQGVSAPGE 79
          KKKMKR+RLKQGVSAPGE
Sbjct: 61 KKKMKRERLKQGVSAPGE 78

[Close]
BLAST of CmoCh14G001910 vs. TAIR 10
Match: AT2G37120.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 100.5 bits (249), Expect = 6.2e-22
Identity = 51/78 (65.38%), Postives = 64/78 (82.05%), Query Frame = 0 

Query: 1  MASANGKGNVINDVEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVS 60
          M+S    G  +  VEAKGLNP LIVLL++GGLL+ FL+ NY +Y+YAQKNLPP+KKKP+S
Sbjct: 1  MSSDGSAGKAV--VEAKGLNPGLIVLLVIGGLLVTFLIANYVMYMYAQKNLPPRKKKPLS 60

Query: 61 KKKMKRDRLKQGVSAPGE 79
          KKK+KR++LKQGV  PGE
Sbjct: 61 KKKLKREKLKQGVPVPGE 76

[Close]
BLAST of CmoCh14G001910 vs. TAIR 10
Match: AT3G09735.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 100.5 bits (249), Expect = 6.2e-22
Identity = 49/65 (75.38%), Postives = 59/65 (90.77%), Query Frame = 0 

Query: 14 VEAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRDRLKQGV 73
          +E+KGLNP LIVLL++GGLLL FLVGN+ LY YAQKNLPP+KKKPVSKKKMK++++KQGV
Sbjct: 9  IESKGLNPGLIVLLVIGGLLLTFLVGNFILYTYAQKNLPPRKKKPVSKKKMKKEKMKQGV 68

Query: 74 SAPGE 79
            PGE
Sbjct: 69 QVPGE 73

[Close]
BLAST of CmoCh14G001910 vs. TAIR 10
Match: AT3G53370.1 (S1FA-like DNA-binding protein )

HSP 1 Score: 100.5 bits (249), Expect = 6.2e-22
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 0 

Query: 15 EAKGLNPALIVLLLVGGLLLIFLVGNYALYLYAQKNLPPKKKKPVSKKKMKRDRLKQGVS 74
          EAKGLNP LIVLL+VGG LL+FL+ NY LY+YAQKNLPP+KKKPVSKKK+KR++LKQGV 
Sbjct: 13 EAKGLNPGLIVLLVVGGPLLVFLIANYVLYVYAQKNLPPRKKKPVSKKKLKREKLKQGVP 72

Query: 75 APGE 79
           PGE
Sbjct: 73 VPGE 76

[Close]
BLAST of CmoCh14G001910 vs. TAIR 10
Match: AT3G53370.2 (S1FA-like DNA-binding protein )

HSP 1 Score: 53.5 bits (127), Expect = 8.7e-08
Identity = 25/33 (75.76%), Postives = 30/33 (90.91%), Query Frame = 0 

Query: 46 YAQKNLPPKKKKPVSKKKMKRDRLKQGVSAPGE 79
          +A KNLPP+KKKPVSKKK+KR++LKQGV  PGE
Sbjct: 6  FAGKNLPPRKKKPVSKKKLKREKLKQGVPVPGE 38

The following BLAST results are available for this feature:
BLAST of CmoCh14G001910 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
P425528.4e-2480.88DNA-binding protein S1FA OS=Spinacia oleracea OX=3562 GN=S1FA PE=3 SV=1[more]
P425518.7e-2178.13DNA-binding protein S1FA1 OS=Arabidopsis thaliana OX=3702 GN=S1FA1 PE=3 SV=2[more]
Q423378.7e-2165.38DNA-binding protein S1FA2 OS=Arabidopsis thaliana OX=3702 GN=S1FA2 PE=3 SV=2[more]
Q93VI08.7e-2175.38DNA-binding protein S1FA3 OS=Arabidopsis thaliana OX=3702 GN=S1FA3 PE=3 SV=1[more]
Q7XLX61.9e-2068.00DNA-binding protein S1FA2 OS=Oryza sativa subsp. japonica OX=39947 GN=S1FA2 PE=3... [more]
BLAST of CmoCh14G001910 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1IZV93.9e-32100.00DNA-binding protein S1FA-like OS=Cucurbita maxima OX=3661 GN=LOC111482175 PE=3 S... [more]
A0A6J1F6J13.9e-32100.00DNA-binding protein S1FA-like OS=Cucurbita moschata OX=3662 GN=LOC111441328 PE=3... [more]
A0A0A0LAW34.3e-3196.15DNA-binding protein S1FA OS=Cucumis sativus OX=3659 GN=Csa_3G736950 PE=3 SV=1[more]
A0A1S3B6801.3e-3096.15DNA-binding protein S1FA-like OS=Cucumis melo OX=3656 GN=LOC103486467 PE=3 SV=1[more]
A0A6J1KWU83.1e-2991.03DNA-binding protein S1FA-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11149... [more]
BLAST of CmoCh14G001910 vs. TAIR 10
Match NameE-valueIdentityDescription
AT2G37120.16.2e-2265.38S1FA-like DNA-binding protein [more]
AT3G09735.16.2e-2275.38S1FA-like DNA-binding protein [more]
AT3G53370.16.2e-2278.13S1FA-like DNA-binding protein [more]
AT3G53370.28.7e-0875.76S1FA-like DNA-binding protein [more]
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006779DNA binding protein S1FAPFAMPF04689S1FAcoord: 14..78
e-value: 5.4E-39
score: 132.2
IPR006779DNA binding protein S1FAPANTHERPTHR35298DNA-BINDING PROTEIN S1FA2coord: 6..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 53..78
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 54..68
NoneNo IPR availablePANTHERPTHR35298:SF9DNA-BINDING PROTEIN S1FA1-RELATEDcoord: 6..78

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G001910.1CmoCh14G001910.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005634 nucleus
molecular_function GO:0003677 DNA binding