
CmoCh14G001260 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGATTGATTACATCCACACTCGATCCTCCTCACAATCAAACTCAAGCAAGTTCAACCCAGTCTATTCTAAATTTTGACAGTAGACGAAATGCATATTCAAGCAACAATATCACCAAAACTATACAACAATGACAAATTATGTACCGATTGTTTGTTTTGGGAAGGCCGTACCATCTGGCATTGCTTAAACAATGTCTCGCTAGAGCTGGACGAGAACCCAGAATTTCCTGACATGCCATCAAAGACTTGATGAAGAAGGAGATGTCGAAAGCCTGAAACCTTAAATTGCCGTGGGGACGGTAGAGAATATTCGACATGTCGAATTGTTGAATGGGTTGGATTGGGCTGGGCTTTGGAAGCCCATTAAATAACTAAATCCTGTAAGCCCAAACAAGAAAAGCCTTTGAATAAACATAGCTGAAACTAAAAATATAAAAATTTAAATATGTATAATTTTGTGATAAATATGAGAAAGGGTCGATGTTTCAATTATGGAGTAAGAAAAAATATATATATAAATATTGATTTTAGAAAATCATTACAAAAAAAAAATAATAATAATAAATAATTTGAATAAACAGAATGGAAGATTATTAATGTAAATTGGTGTTGTTTTAGTTTATTTAAATTGAAGACAAATGCACATGGCGGCAACCAACAATAATTAATGCTAATTATTTAAAAACTAATGCAAAGAAATTTGTGTATAATAACGAAATTTGGCGCGTTAATTCCACGCTTTGATAAGCGACGTGCCTTCGCTGTCGAAGCTCCACGCAATTGTTTTTAACCTCAATTTTCGTCCGTTGCGAATCTCTCTGTCTCTCGATTTTACTACACCACTTAAAAGGCGAATTCTTTTCTGCAATTTTGGCATCCTTTCTTCCGTTCGAGGGAGATCATTTTTGGATTCTTGAAGTTTCTTGGCGTTCGTTGATTTCCGAGCATCGAATTCGGATAGGTAATTTCAATCACTTCATCGAACTTTATATAATTAGGGTATATTCTGTCAAGGAGTTATGGTGCCATTCTTTCGATCGATCAATTGATGGATTTGATGGGATCGACATCTTTTTGCTACAGATGCAATCGATTTATCAGAGCTCGGGCTCGGGCCCTACATTAGGTCTGTTGTCTTGATTGTGGAGGAGAAGAATTTAGGTCTCTGCCGTCTGTTTCTCCGGTTGATCATCGGTTTCCACCTGCTGCGATGAACCACGATGATGCTTCTGACCTAGACCCTTCCTTCGTCCCAAGATTGCGTCGCAGCCGAAGAAACGGTGAGGATCGCTCCTCTTTCAATCGTATCATTGTTCTACGCGATCCCTCTAATTCGGGCGCTATTAGTAATAATGGTGTTGGAGGTGGAGGAAATTATGAGATTTATTATGATGATGGTACGGGGGCTAGTCTCCGTTCCTTGCCTTCTAATATATCCGAGTTCTTGATGGGATCGGGGATCGATCGCCTTCTCAATCAATTGGCGCAACTGGAGGTGAACGGGGTTGGCCCATTGGAACACCCACCGGCGTCGAAGGCTGCAATTGAATCTTTGCCTGTGGTTAAGATTCTTGCTAGCGATGTGCCTTTGGAATCACATTGTGCGGTCTGTAAGGAACCATTTGAGCTCGACTCTGAGGCTCGACAGATGCCGTGTAAGCATATTTACCATTCGGATTGTATATTCCCTTGGCTTTCTATCCGGAATTCCTGTCCTGTTTGTCGCCACCAATTGCCTACCGATGCGCATGGCAGTGGCAGGAGCTCCCCGGCTTCTGCTGAAGAAGTTGTTGGATTAACAATTTGGAGGCTTCCCGGTGGGGGATTTGCTGTTGGAAGGTTCACTTGGGGAAGGGGAGCTGCAGAACATGACCTTCCTGTTGTTTACACTGAAATTGATGGTGGGTTTAGTACCACCAGCGGTGTTCCAAGGAGTATTACATGGGCGTCAAGTGGGATAAGATCAAATGAAAGTGGTGGATTTCGTCGTATTTTTCGCAATTTCTTCTCCTTTTTTGGGAGGTTTAGAAGTACATCCCGTCGTTCTGGTTCAGTTACTGGTTTAATTAGAAGGAGCTTCTCTACTACCTTATTCAATAGACGCTCAAGGAGGAATAATCACTCTATGGTGTCGGACGCAAACTATACATTTTCTGCTTAG ATGGGATTGATTACATCCACACTCGATCCTCCTCACAATCAAACTCAAGCAAGTTCAACCCAGTCTATTCTAAATTTTGACAGCGAATTCTTTTCTGCAATTTTGGCATCCTTTCTTCCGTTCGAGGGAGATCATTTTTGGATTCTTGAAGTTTCTTGGCGTTCGTTGATTTCCGAGCATCGAATTCGGATAGATGCAATCGATTTATCAGAGCTCGGGCTCGGGCCCTACATTAGGTCTGTTGTCTTGATTGTGGAGGAGAAGAATTTAGACCCTTCCTTCGTCCCAAGATTGCGTCGCAGCCGAAGAAACGGTGAGGATCGCTCCTCTTTCAATCGTATCATTGTTCTACGCGATCCCTCTAATTCGGGCGCTATTAGTAATAATGGTGTTGGAGGTGGAGGAAATTATGAGATTTATTATGATGATGGTACGGGGGCTAGTCTCCGTTCCTTGCCTTCTAATATATCCGAGTTCTTGATGGGATCGGGGATCGATCGCCTTCTCAATCAATTGGCGCAACTGGAGGTGAACGGGGTTGGCCCATTGGAACACCCACCGGCGTCGAAGGCTGCAATTGAATCTTTGCCTGTGGTTAAGATTCTTGCTAGCGATGTGCCTTTGGAATCACATTGTGCGGTCTGTAAGGAACCATTTGAGCTCGACTCTGAGGCTCGACAGATGCCGTGTAAGCATATTTACCATTCGGATTGTATATTCCCTTGGCTTTCTATCCGGAATTCCTGTCCTGTTTGTCGCCACCAATTGCCTACCGATGCGCATGGCAGTGGCAGGAGCTCCCCGGCTTCTGCTGAAGAAGTTGTTGGATTAACAATTTGGAGGCTTCCCGGTGGGGGATTTGCTGTTGGAAGGTTCACTTGGGGAAGGGGAGCTGCAGAACATGACCTTCCTGTTGTTTACACTGAAATTGATGGTGGGTTTAGTACCACCAGCGGTGTTCCAAGGAGTATTACATGGGCGTCAAGTGGGATAAGATCAAATGAAAGTGGTGGATTTCGTCGTATTTTTCGCAATTTCTTCTCCTTTTTTGGGAGGTTTAGAAGTACATCCCGTCGTTCTGGTTCAGTTACTGGTTTAATTAGAAGGAGCTTCTCTACTACCTTATTCAATAGACGCTCAAGGAGGAATAATCACTCTATGGTGTCGGACGCAAACTATACATTTTCTGCTTAG ATGGGATTGATTACATCCACACTCGATCCTCCTCACAATCAAACTCAAGCAAGTTCAACCCAGTCTATTCTAAATTTTGACAGCGAATTCTTTTCTGCAATTTTGGCATCCTTTCTTCCGTTCGAGGGAGATCATTTTTGGATTCTTGAAGTTTCTTGGCGTTCGTTGATTTCCGAGCATCGAATTCGGATAGATGCAATCGATTTATCAGAGCTCGGGCTCGGGCCCTACATTAGGTCTGTTGTCTTGATTGTGGAGGAGAAGAATTTAGACCCTTCCTTCGTCCCAAGATTGCGTCGCAGCCGAAGAAACGGTGAGGATCGCTCCTCTTTCAATCGTATCATTGTTCTACGCGATCCCTCTAATTCGGGCGCTATTAGTAATAATGGTGTTGGAGGTGGAGGAAATTATGAGATTTATTATGATGATGGTACGGGGGCTAGTCTCCGTTCCTTGCCTTCTAATATATCCGAGTTCTTGATGGGATCGGGGATCGATCGCCTTCTCAATCAATTGGCGCAACTGGAGGTGAACGGGGTTGGCCCATTGGAACACCCACCGGCGTCGAAGGCTGCAATTGAATCTTTGCCTGTGGTTAAGATTCTTGCTAGCGATGTGCCTTTGGAATCACATTGTGCGGTCTGTAAGGAACCATTTGAGCTCGACTCTGAGGCTCGACAGATGCCGTGTAAGCATATTTACCATTCGGATTGTATATTCCCTTGGCTTTCTATCCGGAATTCCTGTCCTGTTTGTCGCCACCAATTGCCTACCGATGCGCATGGCAGTGGCAGGAGCTCCCCGGCTTCTGCTGAAGAAGTTGTTGGATTAACAATTTGGAGGCTTCCCGGTGGGGGATTTGCTGTTGGAAGGTTCACTTGGGGAAGGGGAGCTGCAGAACATGACCTTCCTGTTGTTTACACTGAAATTGATGGTGGGTTTAGTACCACCAGCGGTGTTCCAAGGAGTATTACATGGGCGTCAAGTGGGATAAGATCAAATGAAAGTGGTGGATTTCGTCGTATTTTTCGCAATTTCTTCTCCTTTTTTGGGAGGTTTAGAAGTACATCCCGTCGTTCTGGTTCAGTTACTGGTTTAATTAGAAGGAGCTTCTCTACTACCTTATTCAATAGACGCTCAAGGAGGAATAATCACTCTATGGTGTCGGACGCAAACTATACATTTTCTGCTTAG MGLITSTLDPPHNQTQASSTQSILNFDSEFFSAILASFLPFEGDHFWILEVSWRSLISEHRIRIDAIDLSELGLGPYIRSVVLIVEEKNLDPSFVPRLRRSRRNGEDRSSFNRIIVLRDPSNSGAISNNGVGGGGNYEIYYDDGTGASLRSLPSNISEFLMGSGIDRLLNQLAQLEVNGVGPLEHPPASKAAIESLPVVKILASDVPLESHCAVCKEPFELDSEARQMPCKHIYHSDCIFPWLSIRNSCPVCRHQLPTDAHGSGRSSPASAEEVVGLTIWRLPGGGFAVGRFTWGRGAAEHDLPVVYTEIDGGFSTTSGVPRSITWASSGIRSNESGGFRRIFRNFFSFFGRFRSTSRRSGSVTGLIRRSFSTTLFNRRSRRNNHSMVSDANYTFSA Homology
BLAST of CmoCh14G001260 vs. ExPASy Swiss-Prot
Match: Q9SNB6 (E3 ubiquitin-protein ligase RDUF1 OS=Arabidopsis thaliana OX=3702 GN=RDUF1 PE=1 SV=1) HSP 1 Score: 238.8 bits (608), Expect = 1.0e-61 Identity = 143/295 (48.47%), Postives = 173/295 (58.64%), Query Frame = 0
BLAST of CmoCh14G001260 vs. ExPASy Swiss-Prot
Match: O22283 (Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1) HSP 1 Score: 233.4 bits (594), Expect = 4.4e-60 Identity = 152/328 (46.34%), Postives = 196/328 (59.76%), Query Frame = 0
BLAST of CmoCh14G001260 vs. ExPASy Swiss-Prot
Match: Q940T5 (E3 ubiquitin-protein ligase RDUF2 OS=Arabidopsis thaliana OX=3702 GN=DURF2 PE=1 SV=1) HSP 1 Score: 230.3 bits (586), Expect = 3.7e-59 Identity = 132/279 (47.31%), Postives = 168/279 (60.22%), Query Frame = 0
BLAST of CmoCh14G001260 vs. ExPASy Swiss-Prot
Match: P0CH30 (E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum OX=3635 GN=RING1 PE=1 SV=1) HSP 1 Score: 132.5 bits (332), Expect = 1.1e-29 Identity = 59/109 (54.13%), Postives = 82/109 (75.23%), Query Frame = 0
BLAST of CmoCh14G001260 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 2.4e-26 Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 0
BLAST of CmoCh14G001260 vs. ExPASy TrEMBL
Match: A0A6J1F5C6 (E3 ubiquitin-protein ligase RDUF1-like OS=Cucurbita moschata OX=3662 GN=LOC111442455 PE=4 SV=1) HSP 1 Score: 621.3 bits (1601), Expect = 2.8e-174 Identity = 308/312 (98.72%), Postives = 310/312 (99.36%), Query Frame = 0
BLAST of CmoCh14G001260 vs. ExPASy TrEMBL
Match: A0A6J1J964 (E3 ubiquitin-protein ligase RDUF1-like OS=Cucurbita maxima OX=3661 GN=LOC111482444 PE=4 SV=1) HSP 1 Score: 607.4 bits (1565), Expect = 4.1e-170 Identity = 302/312 (96.79%), Postives = 305/312 (97.76%), Query Frame = 0
BLAST of CmoCh14G001260 vs. ExPASy TrEMBL
Match: A0A6J1CXJ7 (probable E3 ubiquitin-protein ligase RHC2A OS=Momordica charantia OX=3673 GN=LOC111015120 PE=4 SV=1) HSP 1 Score: 548.5 bits (1412), Expect = 2.3e-152 Identity = 267/299 (89.30%), Postives = 281/299 (93.98%), Query Frame = 0
BLAST of CmoCh14G001260 vs. ExPASy TrEMBL
Match: A0A0A0LFJ3 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G734090 PE=4 SV=1) HSP 1 Score: 534.3 bits (1375), Expect = 4.4e-148 Identity = 262/307 (85.34%), Postives = 278/307 (90.55%), Query Frame = 0
BLAST of CmoCh14G001260 vs. ExPASy TrEMBL
Match: A0A1S3B6J2 (E3 ubiquitin-protein ligase RING1-like OS=Cucumis melo OX=3656 GN=LOC103486374 PE=4 SV=1) HSP 1 Score: 527.3 bits (1357), Expect = 5.4e-146 Identity = 260/307 (84.69%), Postives = 274/307 (89.25%), Query Frame = 0
BLAST of CmoCh14G001260 vs. TAIR 10
Match: AT3G46620.1 (zinc finger (C3HC4-type RING finger) family protein ) HSP 1 Score: 238.8 bits (608), Expect = 7.4e-63 Identity = 143/295 (48.47%), Postives = 173/295 (58.64%), Query Frame = 0
BLAST of CmoCh14G001260 vs. TAIR 10
Match: AT2G39720.1 (RING-H2 finger C2A ) HSP 1 Score: 233.4 bits (594), Expect = 3.1e-61 Identity = 152/328 (46.34%), Postives = 196/328 (59.76%), Query Frame = 0
BLAST of CmoCh14G001260 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein ) HSP 1 Score: 230.3 bits (586), Expect = 2.6e-60 Identity = 132/279 (47.31%), Postives = 168/279 (60.22%), Query Frame = 0
BLAST of CmoCh14G001260 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 121.3 bits (303), Expect = 1.7e-27 Identity = 62/169 (36.69%), Postives = 99/169 (58.58%), Query Frame = 0
BLAST of CmoCh14G001260 vs. TAIR 10
Match: AT3G56580.2 (RING/U-box superfamily protein ) HSP 1 Score: 114.0 bits (284), Expect = 2.8e-25 Identity = 56/118 (47.46%), Postives = 77/118 (65.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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