CmoCh14G001240 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G001240
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	light-harvesting complex-like protein OHP1, chloroplastic
Location	Cmo_Chr14: 547176 .. 548383 (+)
RNA-Seq Expression	CmoCh14G001240
Synteny	CmoCh14G001240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGGAAAAAAGAGTTCCGGAAAAGAAGAGAAATTGAAGAGGAAAGTTGTGATAACATTACCGAAGCCGTGGTTGTGGTTGTGGTTGTCGTTGTGTTTGGGGCATTACCAAGTAATGGCGTCCTCCGCTACGATTTTATCGTCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTGACCGTCAAGACGGCCGACTCTGTCTCTTCCAAGTTGGGTCTGTCCGTGCCAATAACAGAAGGGCTCGTGCCCCTTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTAAGCTGACTATCCTCTTCAAACCACTGGACTTTTCCCAATTCTGTTTCACCTGTTGAAAATATCGTTTACATCTGAAAAGCTTAGAGAAATTCAGAATAATAAATTCATGTGAGCTTGCGAGTTACCTTTTCATTTCTGTTTTGAAGGTTGAATTGCCAAAAGTACAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCAGCATGATAGGCCTCATTGGGATATTCGTAGTAGAGCTGGTGAGCTTTTCTTTCTTTTTTCTTTTCAAAGAAAAGTTTCTTTCTTTTACCTTCTATATCCAAGTTTAGGGGTTTTATTTATTGATTTATTTTCTGTTTTTCCAGATATTGAACAAGGGTATACTTCAGGTGATTGGAGTTGATATTGGGAAAGGACTGGATCTTCCTCTTTGATTTCCAGAAGGCTTATTATCATCTTGAGATCCTTCGTGTTTTTTTTTTTTAAATCAAAATTGTAACTGTAATATAGACCTCTCAACTGTATCAGAGAATTCTACATTCTTCAAGTTCTTGTACTTCATGAGTAAATTACACAACATTGTCAGCCTAGAGAATGTGCTCACCCTCTTGTCTTCTATAAAGATGCATAACAACCAGAACTCGAAAATATTGCAAATTAAATAAGCCTACAGAGTCGAGTATCGATAATAGGCACCTTGGAAGGCGGCTGAGCTATGTCTAGTACCTCTTCCAGTGATATCCTACGATTCTTCCAAGCAAGTTCCGACCATTTCCTCATCATCTGTCCTTCAGCCTTTCTATTCTTTTGGACGTCAAGTATCTCCGCGTACGCACCTGCAGAGGCAATCAGTGATATCAAAGAATAATCATGCTCAGACCACCACGTTTATGAAGCTTAAAACGTCTTTCTTAC

mRNA sequence

GTGGAAAAAAGAGTTCCGGAAAAGAAGAGAAATTGAAGAGGAAAGTTGTGATAACATTACCGAAGCCGTGGTTGTGGTTGTGGTTGTCGTTGTGTTTGGGGCATTACCAAGTAATGGCGTCCTCCGCTACGATTTTATCGTCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTGACCGTCAAGACGGCCGACTCTGTCTCTTCCAAGTTGGGTCTGTCCGTGCCAATAACAGAAGGGCTCGTGCCCCTTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTACAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCAGCATGATAGGCCTCATTGGGATATTCGTAGTAGAGCTGATATTGAACAAGGGTATACTTCAGGTGATTGGAGTTGATATTGGGAAAGGACTGGATCTTCCTCTTTGATTTCCAGAAGGCTTATTATCATCTTGAGATCCTTCGTGTTTTTTTTTTTTAAATCAAAATTGTAACTGTAATATAGACCTCTCAACTGTATCAGAGAATTCTACATTCTTCAAGTTCTTGTACTTCATGAGTAAATTACACAACATTGTCAGCCTAGAGAATGTGCTCACCCTCTTGTCTTCTATAAAGATGCATAACAACCAGAACTCGAAAATATTGCAAATTAAATAAGCCTACAGAGTCGAGTATCGATAATAGGCACCTTGGAAGGCGGCTGAGCTATGTCTAGTACCTCTTCCAGTGATATCCTACGATTCTTCCAAGCAAGTTCCGACCATTTCCTCATCATCTGTCCTTCAGCCTTTCTATTCTTTTGGACGTCAAGTATCTCCGCGTACGCACCTGCAGAGGCAATCAGTGATATCAAAGAATAATCATGCTCAGACCACCACGTTTATGAAGCTTAAAACGTCTTTCTTAC

Coding sequence (CDS)

ATGGCGTCCTCCGCTACGATTTTATCGTCTTCTCTTCTTCCGGCCAGAGCTCCGATCTGTGACCGTCAAGACGGCCGACTCTGTCTCTTCCAAGTTGGGTCTGTCCGTGCCAATAACAGAAGGGCTCGTGCCCCTTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCAAAAGTACAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCACTAAAACTGCTGAAATCTGGAATTCCAGAGCCAGCATGATAGGCCTCATTGGGATATTCGTAGTAGAGCTGATATTGAACAAGGGTATACTTCAGGTGATTGGAGTTGATATTGGGAAAGGACTGGATCTTCCTCTTTGA

Protein sequence

MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL

Homology

[Close]

BLAST of CmoCh14G001240 vs. ExPASy Swiss-Prot
Match: O81208 (Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=OHP1 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 1.2e-24
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 4   SATILSSSLLPARAPICDRQDGR---LCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 63
           S++ LSSSL    + +     GR   LC            R + PF V+AAK P GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 120
           K QPK +  FLGFT+TAEIWNSRA MIGLIG F+VELILNKGIL++IGV+IGKGLDLPL
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLDLPL 110

[Close]

BLAST of CmoCh14G001240 vs. ExPASy TrEMBL
Match: A0A6J1J0W8 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111482448 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.4e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60
           MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 120
           KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of CmoCh14G001240 vs. ExPASy TrEMBL
Match: A0A6J1F851 (light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111441742 PE=4 SV=1)

HSP 1 Score: 229.9 bits (585), Expect = 5.4e-57
Identity = 119/119 (100.00%), Postives = 119/119 (100.00%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60
           MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP
Sbjct: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60

Query: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 120
           KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL
Sbjct: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 119

[Close]

BLAST of CmoCh14G001240 vs. ExPASy TrEMBL
Match: A0A6J1CV10 (light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111015030 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.6e-48
Identity = 102/119 (85.71%), Postives = 112/119 (94.12%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 60
           MASS+ +LSSSLLPARAP  +RQDGRLCLFQ+GSVRANN RAR PFRVQAAK PAGVELP
Sbjct: 1   MASSSAMLSSSLLPARAPTGNRQDGRLCLFQIGSVRANNSRARVPFRVQAAKLPAGVELP 60

Query: 61  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 120
           KV+PKFEAPFLGFTKTAEIWNSRA M+GL+GIF+VELIL+KGILQVIGVD+GKGLDLPL
Sbjct: 61  KVEPKFEAPFLGFTKTAEIWNSRACMMGLVGIFIVELILDKGILQVIGVDVGKGLDLPL 119

[Close]

BLAST of CmoCh14G001240 vs. ExPASy TrEMBL
Match: A0A0A0LAI0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 6.4e-42
Identity = 99/121 (81.82%), Postives = 107/121 (88.43%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQ-AAKPPAGVE 60
           MASS+ IL SSL PARA  C+ QD R CLFQ+G SVRAN+ RAR  FR+Q AAKPPAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTCNHQDSRHCLFQIGYSVRANSSRARTSFRIQAAAKPPAGVE 60

Query: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 120
           LPKV+PKF+APFLGFTKTAEIWNSRA MIGLIGIFVVELILNKGILQVIGVD+GKGLDLP
Sbjct: 61  LPKVEPKFQAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVDVGKGLDLP 120

[Close]

BLAST of CmoCh14G001240 vs. ExPASy TrEMBL
Match: A0A5A7TRS8 (High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001530 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.0e-39
Identity = 99/121 (81.82%), Postives = 105/121 (86.78%), Query Frame = 0


Query: 1   MASSATILSSSLLPARAPICDRQDGRLCLFQVG-SVRANNRRARAPFRVQ-AAKPPAGVE 60
           MASS+ IL SSL PARA   ++QDGR  LFQ+G SVRANN RAR  FRVQ AAKPPAGVE
Sbjct: 1   MASSSVIL-SSLPPARALTFNQQDGRHGLFQIGSSVRANNSRARPSFRVQAAAKPPAGVE 60

Query: 61  LPKVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLP 120
           LPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIG FVVELILNK ILQVIGVD+GKGLDLP
Sbjct: 61  LPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGTFVVELILNKSILQVIGVDVGKGLDLP 120

[Close]

BLAST of CmoCh14G001240 vs. TAIR 10
Match: AT5G02120.1 (one helix protein )

HSP 1 Score: 114.0 bits (284), Expect = 8.3e-26
Identity = 68/119 (57.14%), Postives = 81/119 (68.07%), Query Frame = 0


Query: 4   SATILSSSLLPARAPICDRQDGR---LCLFQVGSVRANNRRARAPFRVQAAKPPAGVELP 63
           S++ LSSSL    + +     GR   LC            R + PF V+AAK P GV +P
Sbjct: 2   SSSPLSSSLFHPLSTLSTHCHGRRQNLCF----------NRKQQPFVVRAAKLPEGVIVP 61

Query: 64  KVQPKFEAPFLGFTKTAEIWNSRASMIGLIGIFVVELILNKGILQVIGVDIGKGLDLPL 120
           K QPK +  FLGFT+TAEIWNSRA MIGLIG F+VELILNKGIL++IGV+IGKGLDLPL
Sbjct: 62  KAQPKSQPAFLGFTQTAEIWNSRACMIGLIGTFIVELILNKGILELIGVEIGKGLDLPL 110

The following BLAST results are available for this feature:

BLAST of CmoCh14G001240 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O81208	1.2e-24	57.14	Light-harvesting complex-like protein OHP1, chloroplastic OS=Arabidopsis thalian...	[more]

BLAST of CmoCh14G001240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J0W8	5.4e-57	100.00	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita maxima OX...	[more]
A0A6J1F851	5.4e-57	100.00	light-harvesting complex-like protein OHP1, chloroplastic OS=Cucurbita moschata ...	[more]
A0A6J1CV10	1.6e-48	85.71	light-harvesting complex-like protein OHP1, chloroplastic OS=Momordica charantia...	[more]
A0A0A0LAI0	6.4e-42	81.82	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G734070 PE=4 SV=1	[more]
A0A5A7TRS8	1.0e-39	81.82	High-light-induced protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]

BLAST of CmoCh14G001240 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02120.1	8.3e-26	57.14	one helix protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14154:SF51	LIGHT-HARVESTING COMPLEX-LIKE PROTEIN OHP1, CHLOROPLASTIC	coord: 1..116
None	No IPR available	PANTHER	PTHR14154	UPF0041 BRAIN PROTEIN 44-RELATED	coord: 1..116
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 58..109

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G001240.1	CmoCh14G001240.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009535	chloroplast thylakoid membrane