CmoCh14G000600 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G000600
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	FCP1 homology domain-containing protein
Location	Cmo_Chr14: 296920 .. 297982 (+)
RNA-Seq Expression	CmoCh14G000600
Synteny	CmoCh14G000600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTCTGCGCGCCCTGCAAGTTTGGCGATCTTTGATGGACTGGCTCTCTTTCATTTCTCCTATAATTGTTCAGATCGTGCATGGTGCTCCTTCTTTGGCTTAGGTTTGGTCCTGCGTTGGTGTTAGATTCCCTCTTCTTGCCTCATCTGCGCCCTCTTTCAAGCCCTTGCCCGATGCTGAGCTTCCTCTTCATCAGTTTTCAGCAAAGAAAGTTATCTCTCTCAGTGTTGTGGATGATCGTGGAAGTCAAGGTCTCCCTTGGGAAAAGATTACGGTAACGTGCGTCGTGTCTTCTTCTTTCCTTTTATAATTATGAAGAAATTTTGAGGCTAAATTGATGATTGTGGACATTGTAGAAGTACGATGATGAGGCAATCTTTGTCGTCGAATTCTTAGATGATAGAGCGTCGGTATCGGTATGTGATTTCCTAGTTTAGATGTTATTTTGAATTGAATTCTAAATTCCGTTGGTTATGGACTTCCACCGTATTTCTTTTAGCTATCACTGCTATCTATGTTCGGAGACCTGTTGTTAATAAGGTTGAGATCAAACCAAGGTTAGGTTTATGCATTTGCCATGCTAGTGTTTTAAATACTTCAATTTCTCATTCAGGTGGTTCTTAATTTGGATGAAACCAGGGTTTGTGCATATGAAACATCCAGTTTGCCAGTCGTTTCTGGCATTCAAGCAACAGAAGCTGGATTTAATTGGTCCGAGCTGGAATGTGTATCCTCGGACAAGGTACCTCTGGATTTCTCTTTCTGGCTTACAGTTTTTTGAAACTTTCCTTGAAATTTATATTATTCATCGATTAATGTTGGAAGCTCTGTTGACGGAATGTGAAGGAAAACCAAAGATCAGTTACGTGACCCTATTCGAACGTCCTGGATTGCATGAGTTCTTGAGCCAGGCTATTGATTTTCCGAACGTATATTACTTACTGCTGGTCTTGAAGGTTTGACATTGATTAATCGGTCTCTTTTGTGACTTTCCCCTTGTTATTCCATTGTCATATGTGGTCTTTTGTGGATGTACAGGATATGCTAGACCGCTGGTGA

mRNA sequence

ATGGAGGTTTGGTCCTGCGTTGGTGTTAGATTCCCTCTTCTTGCCTCATCTGCGCCCTCTTTCAAGCCCTTGCCCGATGCTGAGCTTCCTCTTCATCAGTTTTCAGCAAAGAAAGTTATCTCTCTCAGTGTTGTGGATGATCGTGGAAGTCAAGGTCTCCCTTGGGAAAAGATTACGAAGTACGATGATGAGGCAATCTTTGTCGTCGAATTCTTAGATGATAGAGCGTCGGTATCGGTGGTTCTTAATTTGGATGAAACCAGGGTTTGTGCATATGAAACATCCACTGGAATGTGTATCCTCGGACAAGGAAAACCAAAGATCAGTTACGTGACCCTATTCGAACGTCCTGGATTGCATGAGTTCTTGAGCCAGGCTATTGATTTTCCGAACGTATATTACTTACTGCTGGTCTTGAAGGATATGCTAGACCGCTGGTGA

Coding sequence (CDS)

ATGGAGGTTTGGTCCTGCGTTGGTGTTAGATTCCCTCTTCTTGCCTCATCTGCGCCCTCTTTCAAGCCCTTGCCCGATGCTGAGCTTCCTCTTCATCAGTTTTCAGCAAAGAAAGTTATCTCTCTCAGTGTTGTGGATGATCGTGGAAGTCAAGGTCTCCCTTGGGAAAAGATTACGAAGTACGATGATGAGGCAATCTTTGTCGTCGAATTCTTAGATGATAGAGCGTCGGTATCGGTGGTTCTTAATTTGGATGAAACCAGGGTTTGTGCATATGAAACATCCACTGGAATGTGTATCCTCGGACAAGGAAAACCAAAGATCAGTTACGTGACCCTATTCGAACGTCCTGGATTGCATGAGTTCTTGAGCCAGGCTATTGATTTTCCGAACGTATATTACTTACTGCTGGTCTTGAAGGATATGCTAGACCGCTGGTGA

Protein sequence

MEVWSCVGVRFPLLASSAPSFKPLPDAELPLHQFSAKKVISLSVVDDRGSQGLPWEKITKYDDEAIFVVEFLDDRASVSVVLNLDETRVCAYETSTGMCILGQGKPKISYVTLFERPGLHEFLSQAIDFPNVYYLLLVLKDMLDRW

Homology

[Close]

BLAST of CmoCh14G000600 vs. ExPASy TrEMBL
Match: A0A0A0LDE8 (FCP1 homology domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G731190 PE=4 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.8e-28
Identity = 78/153 (50.98%), Postives = 93/153 (60.78%), Query Frame = 0


Query: 2   EVWSCVGVRFPLLASSAPSFKPLPDAELPLHQFSAKKVISLSVVDDRGSQGLPWEKITKY 61
           ++ S +G RFPLL SSAPSFKPLP AELPLHQFS KK+ SLS +DD G Q  P EK+T  
Sbjct: 44  QILSYIGFRFPLLPSSAPSFKPLPAAELPLHQFSTKKISSLSDLDDGGGQDRPLEKVT-- 103

Query: 62  DDEAIFVVEFLDDRASVSVVLNLDETRVCAYETST------------GM------CILG- 121
                             VVL+LDET VCAYETS+            G+      C+   
Sbjct: 104 ------------------VVLDLDETLVCAYETSSLPAVFRTQATEAGLNWFELECVSSD 163

Query: 122 ---QGKPKISYVTLFERPGLHEFLSQAIDFPNV 133
              +GKPKISYVT+FERPGLHEFLSQA +F ++
Sbjct: 164 KEIEGKPKISYVTVFERPGLHEFLSQAAEFADL 176

[Close]

BLAST of CmoCh14G000600 vs. ExPASy TrEMBL
Match: A0A5A7TRF8 (CTD nuclear envelope phosphatase 1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold236G005280 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 80/163 (49.08%), Postives = 95/163 (58.28%), Query Frame = 0


Query: 2   EVWSCVGVRFPLLASSAPSFKPLPDAELPLHQFSAKKVISLSVVDDRGSQGLPWEKITKY 61
           ++ S +G RFPLL SSAPSFKPLP AELPLHQFS KK+ SL+ +DD G Q  P EKIT  
Sbjct: 44  QILSYIGFRFPLLPSSAPSFKPLPAAELPLHQFSTKKISSLNDLDDGGGQDRPLEKIT-- 103

Query: 62  DDEAIFVVEFLDDRASVSVVLNLDETRVCAYETST------------GM------CILG- 121
                             VVL+LDET VCAYETS+            G+      C+   
Sbjct: 104 ------------------VVLDLDETLVCAYETSSLPAVFRTQATEAGLNWFELECVSSD 163

Query: 122 ---QGKPKISYVTLFERPGLHEFLSQAIDFPNVYYLLLVLKDM 143
              +GKPKISYVT+FERPGLHEFLSQA +F  +      L+ M
Sbjct: 164 KEVEGKPKISYVTVFERPGLHEFLSQAAEFAELILFTAGLEGM 186

[Close]

BLAST of CmoCh14G000600 vs. ExPASy TrEMBL
Match: A0A5D3DN66 (CTD nuclear envelope phosphatase 1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00790 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 78/150 (52.00%), Postives = 91/150 (60.67%), Query Frame = 0


Query: 2   EVWSCVGVRFPLLASSAPSFKPLPDAELPLHQFSAKKVISLSVVDDRGSQGLPWEKITKY 61
           ++ S +G RFPLL SSAPSFKPLP AELPLHQFS KK+ SL+ +DD G Q  P EKIT  
Sbjct: 44  QILSYIGFRFPLLPSSAPSFKPLPAAELPLHQFSTKKISSLNDLDDGGGQDRPLEKIT-- 103

Query: 62  DDEAIFVVEFLDDRASVSVVLNLDETRVCAYETST------------GM------CILG- 121
                             VVL+LDET VCAYETS+            G+      C+   
Sbjct: 104 ------------------VVLDLDETLVCAYETSSLPAVFRTQATEAGLNWFELECVSSD 163

Query: 122 ---QGKPKISYVTLFERPGLHEFLSQAIDF 130
              +GKPKISYVT+FERPGLHEFLSQA +F
Sbjct: 164 KEVEGKPKISYVTVFERPGLHEFLSQAAEF 173

[Close]

BLAST of CmoCh14G000600 vs. ExPASy TrEMBL
Match: E5GBF3 (FCP1 homology domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 78/150 (52.00%), Postives = 91/150 (60.67%), Query Frame = 0


Query: 2   EVWSCVGVRFPLLASSAPSFKPLPDAELPLHQFSAKKVISLSVVDDRGSQGLPWEKITKY 61
           ++ S +G RFPLL SSAPSFKPLP AELPLHQFS KK+ SL+ +DD G Q  P EKIT  
Sbjct: 44  QILSYIGFRFPLLPSSAPSFKPLPAAELPLHQFSTKKISSLNDLDDGGGQDRPLEKIT-- 103

Query: 62  DDEAIFVVEFLDDRASVSVVLNLDETRVCAYETST------------GM------CILG- 121
                             VVL+LDET VCAYETS+            G+      C+   
Sbjct: 104 ------------------VVLDLDETLVCAYETSSLPAVFRTQATEAGLNWFELECVSSD 163

Query: 122 ---QGKPKISYVTLFERPGLHEFLSQAIDF 130
              +GKPKISYVT+FERPGLHEFLSQA +F
Sbjct: 164 KEVEGKPKISYVTVFERPGLHEFLSQAAEF 173

[Close]

BLAST of CmoCh14G000600 vs. ExPASy TrEMBL
Match: A0A1S3B5M9 (carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like OS=Cucumis melo OX=3656 GN=LOC103486293 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.1e-27
Identity = 78/150 (52.00%), Postives = 91/150 (60.67%), Query Frame = 0


Query: 2   EVWSCVGVRFPLLASSAPSFKPLPDAELPLHQFSAKKVISLSVVDDRGSQGLPWEKITKY 61
           ++ S +G RFPLL SSAPSFKPLP AELPLHQFS KK+ SL+ +DD G Q  P EKIT  
Sbjct: 44  QILSYIGFRFPLLPSSAPSFKPLPAAELPLHQFSTKKISSLNDLDDGGGQDRPLEKIT-- 103

Query: 62  DDEAIFVVEFLDDRASVSVVLNLDETRVCAYETST------------GM------CILG- 121
                             VVL+LDET VCAYETS+            G+      C+   
Sbjct: 104 ------------------VVLDLDETLVCAYETSSLPAVFRTQATEAGLNWFELECVSSD 163

Query: 122 ---QGKPKISYVTLFERPGLHEFLSQAIDF 130
              +GKPKISYVT+FERPGLHEFLSQA +F
Sbjct: 164 KEVEGKPKISYVTVFERPGLHEFLSQAAEF 173

[Close]

BLAST of CmoCh14G000600 vs. TAIR 10
Match: AT3G55960.1 (Haloacid dehalogenase-like hydrolase (HAD) superfamily protein )

HSP 1 Score: 67.4 bits (163), Expect = 1.1e-11
Identity = 58/163 (35.58%), Postives = 73/163 (44.79%), Query Frame = 0


Query: 1   MEVWSCVGVRFPLLASSAPS----FKPLPDAELPLHQFSAKKVISLSVVDDRGSQGLPWE 60
           +++   VG   PLL+SSA +    FKPLP  EL                 DR S     E
Sbjct: 34  LQILRAVGYH-PLLSSSAKASADGFKPLPAIELL----------------DRAS-----E 93

Query: 61  KITKYDDEAIFVVEFLDDRA-----SVSVVLNLDETRVCAYETSTGMCILG--------- 120
             T  +  A    +   D A      + VVL+LDET VCAYETS+    L          
Sbjct: 94  SPTTVEIAATTTSDSCSDGARSRFQRLKVVLDLDETLVCAYETSSLPAALRNQAIEAGLK 153

Query: 121 -------------QGKPKISYVTLFERPGLHEFLSQAIDFPNV 133
                         GKPKI+YVT+FERPGLHEFL Q  +F ++
Sbjct: 154 WFELECLSTDKEYDGKPKINYVTVFERPGLHEFLEQLSEFADL 174

The following BLAST results are available for this feature:

BLAST of CmoCh14G000600 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G000600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDE8	3.8e-28	50.98	FCP1 homology domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G7311...	[more]
A0A5A7TRF8	1.1e-27	49.08	CTD nuclear envelope phosphatase 1-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5D3DN66	1.1e-27	52.00	CTD nuclear envelope phosphatase 1-like protein OS=Cucumis melo var. makuwa OX=1...	[more]
E5GBF3	1.1e-27	52.00	FCP1 homology domain-containing protein OS=Cucumis melo subsp. melo OX=412675 PE...	[more]
A0A1S3B5M9	1.1e-27	52.00	carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1-like...	[more]

BLAST of CmoCh14G000600 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G55960.1	1.1e-11	35.58	Haloacid dehalogenase-like hydrolase (HAD) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR12210:SF143	SUBFAMILY NOT NAMED	coord: 3..131
None	No IPR available	PANTHER	PTHR12210	NUCLEAR LIM INTERACTOR-INTERACTING FACTOR-RELATED	coord: 3..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G000600.1	CmoCh14G000600.1	mRNA