CmoCh14G000310 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh14G000310
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Sel1-like protein
Location	Cmo_Chr14: 162242 .. 164543 (-)
RNA-Seq Expression	CmoCh14G000310
Synteny	CmoCh14G000310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGATTAGCGGAGGAACAGAGGGCTTGAGTCGCGTTCCTTTATCAGAAGTTGTTTCTGATTGCGCCAAAAGATGGTTTAAGGACACTTTGAAGGAGGCCAAAGCCGGCGACATCAACATGCAGGTCTTGGTGGGTCAAATGTATTATAGCGGTTATGGGATTCCTAGAGATGCTCAGAAGGTCAATTTCTTCCCTTTCAATTTATAAATTCCTATCGTTTTAACTTCTCCGAGTTTTTCACAAAATCAAGAACTCCAGAATATTGCCTAATTTACTTGACTTTTGGAAAATCTTGAGCTTATATAGATTTATGTGGGTATTATTGGTCAACAGCGTGTATCGTAAATATTGTAAATTCTGTTATGTTTCGGCTAAAAATGGTTCTCAGTTTTCTCCAATGGTTTGGTTCTCTATAATTTCGTGATTTGTTGCAACTTTGAGGAGAATGGAACATTTCTTAATGTCGTATGATTATTAATTGTTCAAATTTTGTTTTTGTTTACTGAAATCCTATTGACTTAAATGGAATTCGTTTGCATGGGTCCAAATACCATTGATTTTAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGATCGTCTGTCTGGAAAGTTAGTGATAAACATCCAGGTTGACTGCCATTTTGATCATTTGTCTTTTCCTAATCTTATCAGTCGTCTATAAATATCTCTTGCTAATTTCTTAAGCCAAACATTGATTGAAATAGGTTATAATGCTAGTGATTCCGATTCAGATGAACTGACTCGTGATTCTTAACTACACCAATGTTGCTGATTCCTCTATGTTATGTCAAAACAGCTGCTGGTATCTCCTCGACAACCTGTCTTTTGGCAATTTAATTTGTTATTCTATGGCTCTTATGTGTGACATCAATTATTTTCTCTTACATATGTGAAAATGAAGTAGTAAAAGAGAGAGTCGGAGAATATATGACATTTTTGCTTGTTAAAACAAGTGCCTTCAGGATTCGGACGTCTTTTAACTCCCTTGCATATGTTTCCATTATACCTTAACACTTCAAAAAGATCTCCCCCTGCCCATGTGGCTGCCCGATTGAATATTAATTTTTAGTTTTTGTCTTCTACGTCCAGTTATTGTTCGAGCCTCCTTGGATGATTTAGGGGATATCTAAATGATTTTGAATATTAAGTTTGTTGAAGTTAATAGTTTTAAGTCATAAATGCTGAGGACAAGAAGGCATCCCTTAGGTGTTCGTGTTTGTGTTATGCAAGTCTCGCTGAAGATCCTAAAGAATGTTTCTTTCTTGTTCTTTTGTCTTTGCTTTAGTTCCTCTTACATGTCACTTCTCATGGGAAATGATTGAAGCTCACACAACTCTTTTTCCTTCTTCCTATAATCATCAATCTTTGTTTTTTCAGTATCTTTGGTTTCTGTTTAGTTAACTCCTTATTTGTCACGGGATGAGATTCAATTATCTTCTAGACCTGTATCATACTTAAAATCTAGTTGCGGGTCGACGGCTGGCAGGATCATTGCTTTGTCCTCTAAATACACTCACATGTCTTTATACCAATCAAGCTGTTGTTTCTGAGACAACTTAGTTGTATGATGAAAGCATTGCTATGATTTAAAACATCTTCCCAACCATACAGTTGGGGAGATGTTTTTCACGTCAAAGATTAGATGGTCATTTTCCCGTCATATGCCTGTGCTATGGTTGATTCCTTATATCGGGATTTCAATTTTATGGAAAGATCATAGATATATGAATAAATATCAATGTTGATGAATATTTCCGTTAATCAAAAGATTTGTAAAAATTATTTAACTTAATAATTACGATGTTCTTACTTTCAGGTTTAGTTATATATCGTGTTAGTAGTATTTATAAAAGATATTAGAGATAACGATTAGTAAGTAATATCGATGTCGAACACTCCTATTCACAAATATATTGATTCAGTTTGGTCTCTTGATTTTTTGTAGTATGTGCTTTTCACCGTGGAGACTCTACTACTTGGTCAGCTATGTGTGTAGCTGCGAAGAACTTGTGTACTTGCTTCCTGATTGTTGGATTTGACGGATGTAATATGCTTTGATTTCTACAAACAATCTTATATCCATTTTTTCACTTTCTGTTTAGGTTACCACTTTTCATTGTCTGCGGGAGATTTTCATTTGTTTTTTGCATAAATGTCAAAATTTGAACTCTTTTGGTTGCTCTTTCAAATTCCCTGTCAAGAACACTCTTTTGGAAGCCTTTCCAAGCATGCTTCTACTTGCCTTCCCTTTCTTAGTTGCTAGCTGTAACACC

mRNA sequence

ATGGAGATTAGCGGAGGAACAGAGGGCTTGAGTCGCGTTCCTTTATCAGAAGTTGTTTCTGATTGCGCCAAAAGATGGTTTAAGGACACTTTGAAGGAGGCCAAAGCCGGCGACATCAACATGCAGGTCTTGGTGGGTCAAATGTATTATAGCGGTTATGGGATTCCTAGAGATGCTCAGAAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGATCGTCTGTCTGGAAAGTTAGTGATAAACATCCAGGTTATAATGCTAGTGATTCCGATTCAGATGAACTGACTCGTGATTCTTAACTACACCAATGTTGCTGATTCCTCTATGTTATGTCAAAACAGCTGCTGTATGTGCTTTTCACCGTGGAGACTCTACTACTTGGTCAGCTATGTGTGTAGCTGCGAAGAACTTGTGTACTTGCTTCCTGATTGTTGGATTTGACGGATGTAATATGCTTTGATTTCTACAAACAATCTTATATCCATTTTTTCACTTTCTGTTTAGGTTACCACTTTTCATTGTCTGCGGGAGATTTTCATTTGTTTTTTGCATAAATGTCAAAATTTGAACTCTTTTGGTTGCTCTTTCAAATTCCCTGTCAAGAACACTCTTTTGGAAGCCTTTCCAAGCATGCTTCTACTTGCCTTCCCTTTCTTAGTTGCTAGCTGTAACACC

Coding sequence (CDS)

ATGGAGATTAGCGGAGGAACAGAGGGCTTGAGTCGCGTTCCTTTATCAGAAGTTGTTTCTGATTGCGCCAAAAGATGGTTTAAGGACACTTTGAAGGAGGCCAAAGCCGGCGACATCAACATGCAGGTCTTGGTGGGTCAAATGTATTATAGCGGTTATGGGATTCCTAGAGATGCTCAGAAGGGAAGAATTTGGATGACAAAAGCATCAAGAAGTCGATCGTCTGTCTGGAAAGTTAGTGATAAACATCCAGGTTATAATGCTAGTGATTCCGATTCAGATGAACTGACTCGTGATTCTTAA

Protein sequence

MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS

Homology

[Close]

BLAST of CmoCh14G000310 vs. ExPASy TrEMBL
Match: A0A6J1J881 (uncharacterized protein LOC111482171 OS=Cucurbita maxima OX=3661 GN=LOC111482171 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 9.1e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CmoCh14G000310 vs. ExPASy TrEMBL
Match: A0A6J1F7C2 (uncharacterized protein LOC111441521 OS=Cucurbita moschata OX=3662 GN=LOC111441521 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 9.1e-50
Identity = 100/100 (100.00%), Postives = 100/100 (100.00%), Query Frame = 0


Query: 1   MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CmoCh14G000310 vs. ExPASy TrEMBL
Match: A0A1S3B5I4 (uncharacterized protein LOC103486254 OS=Cucumis melo OX=3656 GN=LOC103486254 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.7e-49
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTEGL+RVPLSEVVSDC KRWFKDTLKEAKAGDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CmoCh14G000310 vs. ExPASy TrEMBL
Match: A0A5D3DNP0 (Sel1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00440 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.7e-49
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTEGL+RVPLSEVVSDC KRWFKDTLKEAKAGDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLNRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 100

[Close]

BLAST of CmoCh14G000310 vs. ExPASy TrEMBL
Match: A0A6J1DSS4 (uncharacterized protein LOC111024062 OS=Momordica charantia OX=3673 GN=LOC111024062 PE=4 SV=1)

HSP 1 Score: 202.6 bits (514), Expect = 7.7e-49
Identity = 97/100 (97.00%), Postives = 99/100 (99.00%), Query Frame = 0


Query: 1   MEISGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQ 60
           MEISGGTEGLSRVPLSEVVSDC KRWFKDTLKEAKAGDINMQVLVGQMYYSGYG+PRDAQ
Sbjct: 1   MEISGGTEGLSRVPLSEVVSDCVKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGVPRDAQ 60

Query: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDELTRDS 101
           KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSD+LTRDS
Sbjct: 61  KGRIWMTKASRSRSSVWKVSDKHPGYNASDSDSDDLTRDS 100

[Close]

BLAST of CmoCh14G000310 vs. TAIR 10
Match: AT2G38450.1 (CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G05360.1); Has 88 Blast hits to 88 proteins in 25 species: Archae - 0; Bacteria - 16; Metazoa - 0; Fungi - 0; Plants - 70; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 148.7 bits (374), Expect = 2.5e-36
Identity = 68/82 (82.93%), Postives = 77/82 (93.90%), Query Frame = 0


Query: 13  VPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQKGRIWMTKASRS 72
           VPLS VVSDCAKRWFKDTL+EAKAG+I MQVL+GQMYYSGYG+P+DA+KGR+W+TKASR 
Sbjct: 55  VPLSSVVSDCAKRWFKDTLEEAKAGNITMQVLLGQMYYSGYGVPKDARKGRLWITKASRV 114

Query: 73  RSSVWKVSDKHPGYNASDSDSD 95
           RSSVWKV DK PGYNASDSDS+
Sbjct: 115 RSSVWKVIDKRPGYNASDSDSE 136

[Close]

BLAST of CmoCh14G000310 vs. TAIR 10
Match: AT5G05360.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 84 Blast hits to 84 proteins in 24 species: Archae - 0; Bacteria - 8; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink). )

HSP 1 Score: 143.3 bits (360), Expect = 1.1e-34
Identity = 63/92 (68.48%), Postives = 80/92 (86.96%), Query Frame = 0


Query: 4   SGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQKGR 63
           + G++ ++RVPL++VV DC +RWF+DTLKEAK+GD+ MQVLVGQMY SGYGIP+D  KGR
Sbjct: 69  ASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGR 128

Query: 64  IWMTKASRSRSSVWKVSDKHPGYNASDSDSDE 96
            W+ KASR+RSS W+VSDK PGYNASDSDS++
Sbjct: 129 AWINKASRTRSSAWQVSDKPPGYNASDSDSND 160

[Close]

BLAST of CmoCh14G000310 vs. TAIR 10
Match: AT5G05360.2 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G38450.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 129.8 bits (325), Expect = 1.2e-30
Identity = 56/84 (66.67%), Postives = 71/84 (84.52%), Query Frame = 0


Query: 4   SGGTEGLSRVPLSEVVSDCAKRWFKDTLKEAKAGDINMQVLVGQMYYSGYGIPRDAQKGR 63
           + G++ ++RVPL++VV DC +RWF+DTLKEAK+GD+ MQVLVGQMY SGYGIP+D  KGR
Sbjct: 69  ASGSDPINRVPLAQVVEDCVRRWFQDTLKEAKSGDVGMQVLVGQMYCSGYGIPKDENKGR 128

Query: 64  IWMTKASRSRSSVWKVSDKHPGYN 88
            W+ KASR+RSS W+VSDK PG N
Sbjct: 129 AWINKASRTRSSAWQVSDKPPGNN 152

The following BLAST results are available for this feature:

BLAST of CmoCh14G000310 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh14G000310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J881	9.1e-50	100.00	uncharacterized protein LOC111482171 OS=Cucurbita maxima OX=3661 GN=LOC111482171...	[more]
A0A6J1F7C2	9.1e-50	100.00	uncharacterized protein LOC111441521 OS=Cucurbita moschata OX=3662 GN=LOC1114415...	[more]
A0A1S3B5I4	7.7e-49	97.00	uncharacterized protein LOC103486254 OS=Cucumis melo OX=3656 GN=LOC103486254 PE=...	[more]
A0A5D3DNP0	7.7e-49	97.00	Sel1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]
A0A6J1DSS4	7.7e-49	97.00	uncharacterized protein LOC111024062 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]

BLAST of CmoCh14G000310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G38450.1	2.5e-36	82.93	CONTAINS InterPro DOMAIN/s: Sel1-like (InterPro:IPR006597); BEST Arabidopsis tha...	[more]
AT5G05360.1	1.1e-34	68.48	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]
AT5G05360.2	1.2e-30	66.67	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006597	Sel1-like repeat	SMART	SM00671	sel1	coord: 39..74 e-value: 0.002 score: 27.4
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 17..85 e-value: 2.1E-7 score: 32.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 85..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 79..100
None	No IPR available	PANTHER	PTHR36792	EXPRESSED PROTEIN	coord: 2..100
None	No IPR available	PANTHER	PTHR36792:SF6	TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED	coord: 2..100
None	No IPR available	SUPERFAMILY	81901	HCP-like	coord: 28..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G000310.1	CmoCh14G000310.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding