CmoCh13G011910 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G011910
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Disulfide bond formation protein B 2, putative
Location	Cmo_Chr13: 9424816 .. 9425716 (-)
RNA-Seq Expression	CmoCh13G011910
Synteny	CmoCh13G011910

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ACAACTACAAATTGCCCTCTTCCTAAAGCACCCCCCATCACACACACGTTTTCTTTGAAGCAGAGCAGCACTCTGAGCAGAGCAGCAATGGCAGCACCTACTCATTTCCTTCGTTTACTTGTCATATTCTTGGGACTTCACTACAGCCTTCTCTCTTCCAATGCTGTCCCATCTTCGAGTAACCCTCTCAAACCACTCTCCTTCCTCTTCTTTTTCTTTCTTCTTCTTACAAAATGAACTACAAAATGCTTCTGATCTCATTCTGTAGGAAGTGTCCGCCTCATGCATGCATCCATTCAACATCTTCAAGTTTCAAGCAACACCCACATGGTATATTACATTACCCCCATCAACATTTTACTTTTTCTCACCTATTCTGTGTTGGATCCTTTCTTCTCTCTTTACTACCGATTGACTTCTTCCTAACTTATCTGTTTATGCTCTTGGGATTTAAACATGGAAGGTTTCTGTTCGTTCAGGTGATTGCAAACCAAGATAAAGTGAGGCATGGAAGAATGAGTTTGGAACTAAATGACTATCCAGGATCCGGAGCCAACAATCGTCACACACCAGGGCCACAGTTTCGAGGCTGCGCTGATTGTTGATTATTGGTTGGGTTTTATTATATGATAGGAAAGCTTACAAAGATCTACAAGTTGGGTTTAGAACCTTAGTTGTTTATTAGGCAATATGGATTGTTTAGTTTATGGGTCTCTCTCTGCCTGAAACATCTCAAAACATTTTCCTTGTGTAACTTTGAGGCTTTGTAGTGAGTGGAGAAGGTGGATGCACTGGTTGAGTGCAACATACCCAATATCCACCACAATCAATTTAATTGGCTGCGAATTTCAATACCAAAGCAGCACTAAAGTGGAGTACCTTAATATTAAGTTATTGGCCA

mRNA sequence

ACAACTACAAATTGCCCTCTTCCTAAAGCACCCCCCATCACACACACGTTTTCTTTGAAGCAGAGCAGCACTCTGAGCAGAGCAGCAATGGCAGCACCTACTCATTTCCTTCGTTTACTTGTCATATTCTTGGGACTTCACTACAGCCTTCTCTCTTCCAATGCTGTCCCATCTTCGAGAAGTGTCCGCCTCATGCATGCATCCATTCAACATCTTCAAGTTTCAAGCAACACCCACATGGTGATTGCAAACCAAGATAAAGTGAGGCATGGAAGAATGAGTTTGGAACTAAATGACTATCCAGGATCCGGAGCCAACAATCGTCACACACCAGGGCCACAGTTTCGAGGCTGCGCTGATTGTTGATTATTGGTTGGGTTTTATTATATGATAGGAAAGCTTACAAAGATCTACAAGTTGGGTTTAGAACCTTAGTTGTTTATTAGGCAATATGGATTGTTTAGTTTATGGGTCTCTCTCTGCCTGAAACATCTCAAAACATTTTCCTTGTGTAACTTTGAGGCTTTGTAGTGAGTGGAGAAGGTGGATGCACTGGTTGAGTGCAACATACCCAATATCCACCACAATCAATTTAATTGGCTGCGAATTTCAATACCAAAGCAGCACTAAAGTGGAGTACCTTAATATTAAGTTATTGGCCA

Coding sequence (CDS)

ATGGCAGCACCTACTCATTTCCTTCGTTTACTTGTCATATTCTTGGGACTTCACTACAGCCTTCTCTCTTCCAATGCTGTCCCATCTTCGAGAAGTGTCCGCCTCATGCATGCATCCATTCAACATCTTCAAGTTTCAAGCAACACCCACATGGTGATTGCAAACCAAGATAAAGTGAGGCATGGAAGAATGAGTTTGGAACTAAATGACTATCCAGGATCCGGAGCCAACAATCGTCACACACCAGGGCCACAGTTTCGAGGCTGCGCTGATTGTTGA

Protein sequence

MAAPTHFLRLLVIFLGLHYSLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVRHGRMSLELNDYPGSGANNRHTPGPQFRGCADC

Homology

[Close]

BLAST of CmoCh13G011910 vs. ExPASy TrEMBL
Match: A0A6J1KGA6 (uncharacterized protein LOC111495510 OS=Cucurbita maxima OX=3661 GN=LOC111495510 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.3e-39
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYSLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAAPTHFLRLLVIFLGLHY+LLSSNAVPSSRS+ LMHAS Q+ QVSSNTHMVIANQ+KVR
Sbjct: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSISLMHASNQYPQVSSNTHMVIANQEKVR 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM++ELNDYPGSGANNRHTPGPQFRGCADC
Sbjct: 61 HGRMTVELNDYPGSGANNRHTPGPQFRGCADC 92

[Close]

BLAST of CmoCh13G011910 vs. ExPASy TrEMBL
Match: A0A6J1CAG5 (uncharacterized protein LOC111008913 OS=Momordica charantia OX=3673 GN=LOC111008913 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.5e-27
Identity = 68/92 (73.91%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYSLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAAPT  LRLLVIFLG   SLLSSNAVP+SRSV L+H + Q LQVSS THMV   +++V+
Sbjct: 1  MAAPTPLLRLLVIFLGF-CSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVK 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM + LNDYPGSGANNRHTP PQFRGCADC
Sbjct: 61 HGRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CmoCh13G011910 vs. ExPASy TrEMBL
Match: A0A5D3BKK4 (Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00920 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYSLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAA +HFLRLLVIFLGL Y+LL SNAVP+SRSV L+H S+  L VSS+THMV   +++  
Sbjct: 1  MAAASHFLRLLVIFLGL-YNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEES 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM + LNDYPGSGANNRHTP PQFRGCADC
Sbjct: 61 HGRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CmoCh13G011910 vs. ExPASy TrEMBL
Match: A0A1S3B758 (uncharacterized protein LOC103486492 OS=Cucumis melo OX=3656 GN=LOC103486492 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.0e-27
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYSLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAA +HFLRLLVIFLGL Y+LL SNAVP+SRSV L+H S+  L VSS+THMV   +++  
Sbjct: 1  MAAASHFLRLLVIFLGL-YNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEES 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM + LNDYPGSGANNRHTP PQFRGCADC
Sbjct: 61 HGRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CmoCh13G011910 vs. ExPASy TrEMBL
Match: A0A5A7T3C3 (Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold112G00820 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 4.5e-27
Identity = 65/92 (70.65%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYSLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAA +HFLRLLVIFLGL Y+LL SNAVP+SRSV L+H S+  L VS++THMV   +++  
Sbjct: 1  MAAASHFLRLLVIFLGL-YNLLCSNAVPTSRSVSLLHGSLPFLHVSTDTHMVTKTEEEES 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM + LNDYPGSGANNRHTP PQFRGCADC
Sbjct: 61 HGRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CmoCh13G011910 vs. NCBI nr
Match: KAG7020052.1 (hypothetical protein SDJN02_19020, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 186.0 bits (471), Expect = 1.4e-43
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYSLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAAPTHFLRLLVIFLGLHY+LLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR
Sbjct: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRMSLELNDYPGSGANNRHTPGPQFRGCADC
Sbjct: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 92

[Close]

BLAST of CmoCh13G011910 vs. NCBI nr
Match: XP_023519471.1 (uncharacterized protein LOC111782875 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 178.3 bits (451), Expect = 3.0e-41
Identity = 87/92 (94.57%), Postives = 90/92 (97.83%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYSLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAAPTHFLRLLVIFLGLHY+LLSSNAVPSSRSV LMHAS QHLQVSSNTHMVIANQ+KVR
Sbjct: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSVSLMHASNQHLQVSSNTHMVIANQEKVR 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRMS+ELNDYPGSGANNRHTPGPQFRGCADC
Sbjct: 61 HGRMSVELNDYPGSGANNRHTPGPQFRGCADC 92

[Close]

BLAST of CmoCh13G011910 vs. NCBI nr
Match: XP_023001352.1 (uncharacterized protein LOC111495510 [Cucurbita maxima])

HSP 1 Score: 171.8 bits (434), Expect = 2.8e-39
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYSLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAAPTHFLRLLVIFLGLHY+LLSSNAVPSSRS+ LMHAS Q+ QVSSNTHMVIANQ+KVR
Sbjct: 1  MAAPTHFLRLLVIFLGLHYNLLSSNAVPSSRSISLMHASNQYPQVSSNTHMVIANQEKVR 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM++ELNDYPGSGANNRHTPGPQFRGCADC
Sbjct: 61 HGRMTVELNDYPGSGANNRHTPGPQFRGCADC 92

[Close]

BLAST of CmoCh13G011910 vs. NCBI nr
Match: XP_022137483.1 (uncharacterized protein LOC111008913 [Momordica charantia])

HSP 1 Score: 131.7 bits (330), Expect = 3.2e-27
Identity = 68/92 (73.91%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYSLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAAPT  LRLLVIFLG   SLLSSNAVP+SRSV L+H + Q LQVSS THMV   +++V+
Sbjct: 1  MAAPTPLLRLLVIFLGF-CSLLSSNAVPTSRSVSLIHGADQFLQVSSKTHMVSGGEEEVK 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM + LNDYPGSGANNRHTP PQFRGCADC
Sbjct: 61 HGRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CmoCh13G011910 vs. NCBI nr
Match: XP_008442734.1 (PREDICTED: uncharacterized protein LOC103486492 [Cucumis melo] >TYJ98895.1 putative Disulfide bond formation protein B 2 [Cucumis melo var. makuwa])

HSP 1 Score: 131.3 bits (329), Expect = 4.2e-27
Identity = 66/92 (71.74%), Postives = 76/92 (82.61%), Query Frame = 0


Query: 1  MAAPTHFLRLLVIFLGLHYSLLSSNAVPSSRSVRLMHASIQHLQVSSNTHMVIANQDKVR 60
          MAA +HFLRLLVIFLGL Y+LL SNAVP+SRSV L+H S+  L VSS+THMV   +++  
Sbjct: 1  MAAASHFLRLLVIFLGL-YNLLCSNAVPTSRSVSLLHGSLPFLHVSSDTHMVTKTEEEES 60

Query: 61 HGRMSLELNDYPGSGANNRHTPGPQFRGCADC 93
          HGRM + LNDYPGSGANNRHTP PQFRGCADC
Sbjct: 61 HGRMVVALNDYPGSGANNRHTPRPQFRGCADC 91

[Close]

BLAST of CmoCh13G011910 vs. TAIR 10
Match: AT3G47510.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; Has 15 Blast hits to 15 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 4.8e-05
Identity = 22/31 (70.97%), Postives = 24/31 (77.42%), Query Frame = 0


Query: 63 RMSLELNDYPGSGANNRHTPGPQFRGC-ADC 93
          RM +ELNDYPGSGANNRH   P+ RGC  DC
Sbjct: 57 RMVMELNDYPGSGANNRHL--PRQRGCVVDC 85

The following BLAST results are available for this feature:

BLAST of CmoCh13G011910 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G011910 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KGA6	1.3e-39	90.22	uncharacterized protein LOC111495510 OS=Cucurbita maxima OX=3661 GN=LOC111495510...	[more]
A0A6J1CAG5	1.5e-27	73.91	uncharacterized protein LOC111008913 OS=Momordica charantia OX=3673 GN=LOC111008...	[more]
A0A5D3BKK4	2.0e-27	71.74	Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A1S3B758	2.0e-27	71.74	uncharacterized protein LOC103486492 OS=Cucumis melo OX=3656 GN=LOC103486492 PE=...	[more]
A0A5A7T3C3	4.5e-27	70.65	Putative Disulfide bond formation protein B 2 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of CmoCh13G011910 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7020052.1	1.4e-43	98.91	hypothetical protein SDJN02_19020, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_023519471.1	3.0e-41	94.57	uncharacterized protein LOC111782875 [Cucurbita pepo subsp. pepo]	[more]
XP_023001352.1	2.8e-39	90.22	uncharacterized protein LOC111495510 [Cucurbita maxima]	[more]
XP_022137483.1	3.2e-27	73.91	uncharacterized protein LOC111008913 [Momordica charantia]	[more]
XP_008442734.1	4.2e-27	71.74	PREDICTED: uncharacterized protein LOC103486492 [Cucumis melo] >TYJ98895.1 putat...	[more]

BLAST of CmoCh13G011910 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47510.1	4.8e-05	70.97	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 66..92
None	No IPR available	PANTHER	PTHR33474	TRANSMEMBRANE PROTEIN	coord: 2..87
None	No IPR available	PANTHER	PTHR33474:SF2	TRANSMEMBRANE PROTEIN	coord: 2..87

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G011910.1	CmoCh13G011910.1	mRNA