CmoCh13G011000 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G011000
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	dof zinc finger protein 4-like
Location	Cmo_Chr13: 9041440 .. 9041925 (+)
RNA-Seq Expression	CmoCh13G011000
Synteny	CmoCh13G011000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAATTAGGGCACATGGATTTGCAAGACATTCGATCCAAGCCATGGAAGTGCCCAAGGTGCGGTTCGCCCGACACCAAATTCTGCTATTACAATAACTACAATTACTCTCAGCCTCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACCATCGGCGGTGTCCTCCGCAACGTTCCTGTTGGCGGCGGAAATCGCAAAGCGAAGAACAGCCCGAAGCCGAAGCCGAAGCCGAGGGCTGCAATGATCGTGAGAGATTCGCCGTCGTCGAAATCGAATTCGTGGAAGTCCGATTTGGAAATCCTCCCGTCGCCGCTGAGGTTGAATCAGGCGGGTGATTGGTACGGTTGGATTGAGACTGGAAGGGAGGCGGAGAAAGGGGCGAGGGATTTGGATCGTTGGATCATTTGCCGACGAGTGATGAAACCGAATGAATGGTTGAGATTACCGGTGGCGTCGCAATCGGAAATCACAACTATTTAA

mRNA sequence

ATGGGAGAATTAGGGCACATGGATTTGCAAGACATTCGATCCAAGCCATGGAAGTGCCCAAGGTGCGGTTCGCCCGACACCAAATTCTGCTATTACAATAACTACAATTACTCTCAGCCTCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACCATCGGCGGTGTCCTCCGCAACGTTCCTGTTGGCGGCGGAAATCGCAAAGCGAAGAACAGCCCGAAGCCGAAGCCGAAGCCGAGGGCTGCAATGATCGTGAGAGATTCGCCGTCGTCGAAATCGAATTCGTGGAAGTCCGATTTGGAAATCCTCCCGTCGCCGCTGAGGTTGAATCAGGCGGGTGATTGGTACGGTTGGATTGAGACTGGAAGGGAGGCGGAGAAAGGGGCGAGGGATTTGGATCGTTGGATCATTTGCCGACGAGTGATGAAACCGAATGAATGGTTGAGATTACCGGTGGCGTCGCAATCGGAAATCACAACTATTTAA

Coding sequence (CDS)

ATGGGAGAATTAGGGCACATGGATTTGCAAGACATTCGATCCAAGCCATGGAAGTGCCCAAGGTGCGGTTCGCCCGACACCAAATTCTGCTATTACAATAACTACAATTACTCTCAGCCTCGCCACTTCTGCAAGACCTGCCGCCGCTACTGGACCATCGGCGGTGTCCTCCGCAACGTTCCTGTTGGCGGCGGAAATCGCAAAGCGAAGAACAGCCCGAAGCCGAAGCCGAAGCCGAGGGCTGCAATGATCGTGAGAGATTCGCCGTCGTCGAAATCGAATTCGTGGAAGTCCGATTTGGAAATCCTCCCGTCGCCGCTGAGGTTGAATCAGGCGGGTGATTGGTACGGTTGGATTGAGACTGGAAGGGAGGCGGAGAAAGGGGCGAGGGATTTGGATCGTTGGATCATTTGCCGACGAGTGATGAAACCGAATGAATGGTTGAGATTACCGGTGGCGTCGCAATCGGAAATCACAACTATTTAA

Protein sequence

MGELGHMDLQDIRSKPWKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGNRKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAGDWYGWIETGREAEKGARDLDRWIICRRVMKPNEWLRLPVASQSEITTI

Homology

[Close]

BLAST of CmoCh13G011000 vs. ExPASy Swiss-Prot
Match: Q9LSL6 (Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana OX=3702 GN=DOF5.7 PE=2 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-23
Identity = 52/84 (61.90%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 18  KCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGNRKAKNSPKPKP 77
           KCPRC SP+TKFCYYNNY+ SQPRHFCK+CRRYWT GG LRNVP+GGG RK K S     
Sbjct: 42  KCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS----I 101

Query: 78  KPRAAMIVRDSPSSKSNSWKSDLE 102
           KP ++M    S SS    + S +E
Sbjct: 102 KPNSSMNTLPSSSSSQRFFSSIME 121

[Close]

BLAST of CmoCh13G011000 vs. ExPASy Swiss-Prot
Match: Q6Z345 (Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 6.6e-23
Identity = 53/96 (55.21%), Postives = 63/96 (65.62%), Query Frame = 0


Query: 18  KCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGNRKAKNSPKPKP 77
           KCPRC S +TKFCYYNNYN SQPRHFCK+CRRYWT GGVLRNVPVGGG RK K S     
Sbjct: 46  KCPRCESTNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRSGSSS- 105

Query: 78  KPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAG 114
              AA     +P++ +++ K+      S  R +  G
Sbjct: 106 ---AASSAPSTPTAATDNAKNQRRASASSPRSSSGG 137

[Close]

BLAST of CmoCh13G011000 vs. ExPASy Swiss-Prot
Match: Q8LDR0 (Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana OX=3702 GN=DOF5.4 PE=2 SV=2)

HSP 1 Score: 107.8 bits (268), Expect = 1.1e-22
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 18  KCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGNRKAKNSPKPKP 77
           KCPRC S +TKFCYYNNYN SQPRHFCK CRRYWT GGVLRNVPVGGG RKAK S K K 
Sbjct: 52  KCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRS-KTKQ 111

Query: 78  KPRAA 83
            P ++
Sbjct: 112 VPSSS 115

[Close]

BLAST of CmoCh13G011000 vs. ExPASy Swiss-Prot
Match: Q94AR6 (Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana OX=3702 GN=DOF3.1 PE=2 SV=2)

HSP 1 Score: 107.5 bits (267), Expect = 1.5e-22
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 18  KCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGNRKAKNSPKPKP 77
           KCPRC SP+TKFCYYNNYN SQPRHFCK+CRRYWT GG LRNVPVGGG+R  KN+ K   
Sbjct: 30  KCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSR--KNATK--- 89

Query: 78  KPRAAMIVRDSPSSKSNSWKS 99
           +  ++     SPS+ S + K+
Sbjct: 90  RSTSSSSSASSPSNSSQNKKT 105

[Close]

BLAST of CmoCh13G011000 vs. ExPASy Swiss-Prot
Match: Q9ZV33 (Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV=2)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-22
Identity = 54/107 (50.47%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 18  KCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGNRK--------A 77
           KCPRC S +TKFCY+NNYN +QPRHFCK CRRYWT GG LRNVPVGGG R+        +
Sbjct: 95  KCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGKSGNS 154

Query: 78  KNSPKPKPKPRAAMIVRDSPSSKSN---SWKSDLEILPSPLRLNQAG 114
           K+S   + K   +M+   SP++ SN      S    LP+   L Q G
Sbjct: 155 KSSSSSQNKQSTSMVNATSPTNTSNVQLQTNSQFPFLPTLQNLTQLG 201

[Close]

BLAST of CmoCh13G011000 vs. ExPASy TrEMBL
Match: A0A6J1EE71 (dof zinc finger protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111431732 PE=4 SV=1)

HSP 1 Score: 353.2 bits (905), Expect = 5.7e-94
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MGELGHMDLQDIRSKPWKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNV 60
           MGELGHMDLQDIRSKPWKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNV
Sbjct: 1   MGELGHMDLQDIRSKPWKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNV 60

Query: 61  PVGGGNRKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAGDWYGWIE 120
           PVGGGNRKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAGDWYGWIE
Sbjct: 61  PVGGGNRKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAGDWYGWIE 120

Query: 121 TGREAEKGARDLDRWIICRRVMKPNEWLRLPVASQSEITTI 162
           TGREAEKGARDLDRWIICRRVMKPNEWLRLPVASQSEITTI
Sbjct: 121 TGREAEKGARDLDRWIICRRVMKPNEWLRLPVASQSEITTI 161

[Close]

BLAST of CmoCh13G011000 vs. ExPASy TrEMBL
Match: A0A5D3BGN5 (Dof zinc finger protein DOF3.4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G001620 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 72/122 (59.02%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 11  DIRSKP----WKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGN 70
           D +SKP     +CPRC S  TKFCYYNNYNYSQPRHFCKTCRRYWT+GG+LRNVPVGGG+
Sbjct: 2   DSQSKPDELKCRCPRCNSLHTKFCYYNNYNYSQPRHFCKTCRRYWTLGGLLRNVPVGGGS 61

Query: 71  RKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAGDWYGWIETGREAE 129
           RK+K + KPK     A     + +S S    SDL++  SPL+LNQ+GD   W   GRE E
Sbjct: 62  RKSKKNSKPK----RATFTDSACNSNSGVIGSDLDMRSSPLKLNQSGD-SPW--NGREFE 116

[Close]

BLAST of CmoCh13G011000 vs. ExPASy TrEMBL
Match: A0A1S3BDV3 (dof zinc finger protein DOF3.4-like OS=Cucumis melo OX=3656 GN=LOC103488810 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.7e-29
Identity = 72/122 (59.02%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 11  DIRSKP----WKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGN 70
           D +SKP     +CPRC S  TKFCYYNNYNYSQPRHFCKTCRRYWT+GG+LRNVPVGGG+
Sbjct: 2   DSQSKPDELKCRCPRCNSLHTKFCYYNNYNYSQPRHFCKTCRRYWTLGGLLRNVPVGGGS 61

Query: 71  RKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAGDWYGWIETGREAE 129
           RK+K + KPK     A     + +S S    SDL++  SPL+LNQ+GD   W   GRE E
Sbjct: 62  RKSKKNSKPK----RATFTDSACNSNSGVIGSDLDMRSSPLKLNQSGD-SPW--NGREFE 116

[Close]

BLAST of CmoCh13G011000 vs. ExPASy TrEMBL
Match: A0A0A0LTJ9 (Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039960 PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.2e-27
Identity = 74/123 (60.16%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 11  DIRSKP----WKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGN 70
           D +SKP     +CPRC S  TKFCYYNNYNYSQPRHFCKTCRRYWT+GG+LRN+PVGGG 
Sbjct: 2   DFQSKPNELKSQCPRCNSLHTKFCYYNNYNYSQPRHFCKTCRRYWTLGGLLRNIPVGGGT 61

Query: 71  RKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRL-NQAGDWYGWIETGREA 129
           RK+K + K K   RA         S  NS  SDL++L SPL+L NQAGD + W   GRE 
Sbjct: 62  RKSKKNSKAK---RATF-----TDSACNS-NSDLDMLSSPLKLNNQAGD-FQW--NGREF 112

[Close]

BLAST of CmoCh13G011000 vs. ExPASy TrEMBL
Match: A0A6J1C7U6 (dof zinc finger protein DOF5.8-like OS=Momordica charantia OX=3673 GN=LOC111008785 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 3.5e-27
Identity = 67/125 (53.60%), Postives = 84/125 (67.20%), Query Frame = 0


Query: 11  DIRSKPWKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGNRKAK 70
           D R     CPRC S DTKFCYYNNYNYSQPRH CKTCRRYWTIGG LRN+PVGG  RK+ 
Sbjct: 15  DDRRVKCPCPRCHSLDTKFCYYNNYNYSQPRHLCKTCRRYWTIGGTLRNIPVGGATRKSN 74

Query: 71  NSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEI-LPSPLRLNQ--AGDWYGWIET-GREAE 130
           NS K KPKP A +  ++S ++ + +   +    L +P +L++  A D+YGWI++ GR   
Sbjct: 75  NS-KLKPKPAAIVGSKNSAANATGALSDESRSDLTTPFKLSEEVAADYYGWIQSQGRGIA 134

Query: 131 KGARD 132
            G  D
Sbjct: 135 VGPAD 138

[Close]

BLAST of CmoCh13G011000 vs. NCBI nr
Match: XP_022924220.1 (dof zinc finger protein 4-like [Cucurbita moschata])

HSP 1 Score: 353.2 bits (905), Expect = 1.2e-93
Identity = 161/161 (100.00%), Postives = 161/161 (100.00%), Query Frame = 0


Query: 1   MGELGHMDLQDIRSKPWKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNV 60
           MGELGHMDLQDIRSKPWKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNV
Sbjct: 1   MGELGHMDLQDIRSKPWKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNV 60

Query: 61  PVGGGNRKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAGDWYGWIE 120
           PVGGGNRKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAGDWYGWIE
Sbjct: 61  PVGGGNRKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAGDWYGWIE 120

Query: 121 TGREAEKGARDLDRWIICRRVMKPNEWLRLPVASQSEITTI 162
           TGREAEKGARDLDRWIICRRVMKPNEWLRLPVASQSEITTI
Sbjct: 121 TGREAEKGARDLDRWIICRRVMKPNEWLRLPVASQSEITTI 161

[Close]

BLAST of CmoCh13G011000 vs. NCBI nr
Match: KAG6584390.1 (Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG7019976.1 Dof zinc finger protein DOF5.4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 257.7 bits (657), Expect = 6.7e-65
Identity = 121/130 (93.08%), Postives = 121/130 (93.08%), Query Frame = 0


Query: 1   MGELGHMDLQDIRSKPWKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNV 60
           M ELGHMDLQDIRSKPWKCPRC S DTKFCYYNNYN SQPRHFCKTCRRYWTIGGVLRNV
Sbjct: 1   MAELGHMDLQDIRSKPWKCPRCDSLDTKFCYYNNYNCSQPRHFCKTCRRYWTIGGVLRNV 60

Query: 61  PVGGGNRKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAGDWYGWIE 120
           PVGGGNRKAKNS K KPK  AAMIVRDSPSSKSNSWKSDLEILPSPL LNQAGDWYGWIE
Sbjct: 61  PVGGGNRKAKNSSKLKPK--AAMIVRDSPSSKSNSWKSDLEILPSPLNLNQAGDWYGWIE 120

Query: 121 TGREAEKGAR 131
           TGREAEKGAR
Sbjct: 121 TGREAEKGAR 128

[Close]

BLAST of CmoCh13G011000 vs. NCBI nr
Match: XP_023520188.1 (dof zinc finger protein DOF3.1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 226.1 bits (575), Expect = 2.2e-55
Identity = 112/130 (86.15%), Postives = 113/130 (86.92%), Query Frame = 0


Query: 1   MGELGHMDLQDIRSKPWKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNV 60
           M ELGHMDLQDIRSKPWKCPRC SPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNV
Sbjct: 1   MAELGHMDLQDIRSKPWKCPRCDSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNV 60

Query: 61  PVGGGNRKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAGDWYGWIE 120
           PVGGGNRKAKNS K KPK  AAMIVRDSPSSKSNSWKSDLEILPSPL+LNQ GD      
Sbjct: 61  PVGGGNRKAKNSSKLKPK--AAMIVRDSPSSKSNSWKSDLEILPSPLKLNQ-GD------ 119

Query: 121 TGREAEKGAR 131
               AEKGAR
Sbjct: 121 --PPAEKGAR 119

[Close]

BLAST of CmoCh13G011000 vs. NCBI nr
Match: XP_008445935.1 (PREDICTED: dof zinc finger protein DOF3.4-like [Cucumis melo] >TYJ98960.1 dof zinc finger protein DOF3.4-like [Cucumis melo var. makuwa])

HSP 1 Score: 139.0 bits (349), Expect = 3.5e-29
Identity = 72/122 (59.02%), Postives = 85/122 (69.67%), Query Frame = 0


Query: 11  DIRSKP----WKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGN 70
           D +SKP     +CPRC S  TKFCYYNNYNYSQPRHFCKTCRRYWT+GG+LRNVPVGGG+
Sbjct: 2   DSQSKPDELKCRCPRCNSLHTKFCYYNNYNYSQPRHFCKTCRRYWTLGGLLRNVPVGGGS 61

Query: 71  RKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRLNQAGDWYGWIETGREAE 129
           RK+K + KPK     A     + +S S    SDL++  SPL+LNQ+GD   W   GRE E
Sbjct: 62  RKSKKNSKPK----RATFTDSACNSNSGVIGSDLDMRSSPLKLNQSGD-SPW--NGREFE 116

[Close]

BLAST of CmoCh13G011000 vs. NCBI nr
Match: XP_004137607.1 (dof zinc finger protein DOF1.7 [Cucumis sativus])

HSP 1 Score: 132.9 bits (333), Expect = 2.5e-27
Identity = 74/123 (60.16%), Postives = 85/123 (69.11%), Query Frame = 0


Query: 11  DIRSKP----WKCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGN 70
           D +SKP     +CPRC S  TKFCYYNNYNYSQPRHFCKTCRRYWT+GG+LRN+PVGGG 
Sbjct: 2   DFQSKPNELKSQCPRCNSLHTKFCYYNNYNYSQPRHFCKTCRRYWTLGGLLRNIPVGGGT 61

Query: 71  RKAKNSPKPKPKPRAAMIVRDSPSSKSNSWKSDLEILPSPLRL-NQAGDWYGWIETGREA 129
           RK+K + K K   RA         S  NS  SDL++L SPL+L NQAGD + W   GRE 
Sbjct: 62  RKSKKNSKAK---RATF-----TDSACNS-NSDLDMLSSPLKLNNQAGD-FQW--NGREF 112

[Close]

BLAST of CmoCh13G011000 vs. TAIR 10
Match: AT5G65590.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 111.3 bits (277), Expect = 7.3e-25
Identity = 52/84 (61.90%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 18  KCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGNRKAKNSPKPKP 77
           KCPRC SP+TKFCYYNNY+ SQPRHFCK+CRRYWT GG LRNVP+GGG RK K S     
Sbjct: 42  KCPRCNSPNTKFCYYNNYSLSQPRHFCKSCRRYWTRGGALRNVPIGGGCRKTKKS----I 101

Query: 78  KPRAAMIVRDSPSSKSNSWKSDLE 102
           KP ++M    S SS    + S +E
Sbjct: 102 KPNSSMNTLPSSSSSQRFFSSIME 121

[Close]

BLAST of CmoCh13G011000 vs. TAIR 10
Match: AT5G60850.1 (OBF binding protein 4 )

HSP 1 Score: 107.8 bits (268), Expect = 8.0e-24
Identity = 50/65 (76.92%), Postives = 53/65 (81.54%), Query Frame = 0


Query: 18  KCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGNRKAKNSPKPKP 77
           KCPRC S +TKFCYYNNYN SQPRHFCK CRRYWT GGVLRNVPVGGG RKAK S K K 
Sbjct: 52  KCPRCNSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKAKRS-KTKQ 111

Query: 78  KPRAA 83
            P ++
Sbjct: 112 VPSSS 115

[Close]

BLAST of CmoCh13G011000 vs. TAIR 10
Match: AT3G21270.1 (DOF zinc finger protein 2 )

HSP 1 Score: 107.5 bits (267), Expect = 1.0e-23
Identity = 51/81 (62.96%), Postives = 61/81 (75.31%), Query Frame = 0


Query: 18  KCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGNRKAKNSPKPKP 77
           KCPRC SP+TKFCYYNNYN SQPRHFCK+CRRYWT GG LRNVPVGGG+R  KN+ K   
Sbjct: 30  KCPRCDSPNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGALRNVPVGGGSR--KNATK--- 89

Query: 78  KPRAAMIVRDSPSSKSNSWKS 99
           +  ++     SPS+ S + K+
Sbjct: 90  RSTSSSSSASSPSNSSQNKKT 105

[Close]

BLAST of CmoCh13G011000 vs. TAIR 10
Match: AT2G28810.1 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-23
Identity = 54/107 (50.47%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 18  KCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGNRK--------A 77
           KCPRC S +TKFCY+NNYN +QPRHFCK CRRYWT GG LRNVPVGGG R+        +
Sbjct: 95  KCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGKSGNS 154

Query: 78  KNSPKPKPKPRAAMIVRDSPSSKSN---SWKSDLEILPSPLRLNQAG 114
           K+S   + K   +M+   SP++ SN      S    LP+   L Q G
Sbjct: 155 KSSSSSQNKQSTSMVNATSPTNTSNVQLQTNSQFPFLPTLQNLTQLG 201

[Close]

BLAST of CmoCh13G011000 vs. TAIR 10
Match: AT2G28810.2 (Dof-type zinc finger DNA-binding family protein )

HSP 1 Score: 107.1 bits (266), Expect = 1.4e-23
Identity = 54/107 (50.47%), Postives = 66/107 (61.68%), Query Frame = 0


Query: 18  KCPRCGSPDTKFCYYNNYNYSQPRHFCKTCRRYWTIGGVLRNVPVGGGNRK--------A 77
           KCPRC S +TKFCY+NNYN +QPRHFCK CRRYWT GG LRNVPVGGG R+        +
Sbjct: 78  KCPRCDSANTKFCYFNNYNLTQPRHFCKACRRYWTRGGALRNVPVGGGCRRNKKGKSGNS 137

Query: 78  KNSPKPKPKPRAAMIVRDSPSSKSN---SWKSDLEILPSPLRLNQAG 114
           K+S   + K   +M+   SP++ SN      S    LP+   L Q G
Sbjct: 138 KSSSSSQNKQSTSMVNATSPTNTSNVQLQTNSQFPFLPTLQNLTQLG 184

The following BLAST results are available for this feature:

BLAST of CmoCh13G011000 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LSL6	1.0e-23	61.90	Dof zinc finger protein DOF5.7 OS=Arabidopsis thaliana OX=3702 GN=DOF5.7 PE=2 SV...	[more]
Q6Z345	6.6e-23	55.21	Dof zinc finger protein 4 OS=Oryza sativa subsp. japonica OX=39947 GN=DOF4 PE=2 ...	[more]
Q8LDR0	1.1e-22	76.92	Dof zinc finger protein DOF5.4 OS=Arabidopsis thaliana OX=3702 GN=DOF5.4 PE=2 SV...	[more]
Q94AR6	1.5e-22	62.96	Dof zinc finger protein DOF3.1 OS=Arabidopsis thaliana OX=3702 GN=DOF3.1 PE=2 SV...	[more]
Q9ZV33	1.9e-22	50.47	Dof zinc finger protein DOF2.2 OS=Arabidopsis thaliana OX=3702 GN=DOF2.2 PE=2 SV...	[more]

BLAST of CmoCh13G011000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EE71	5.7e-94	100.00	dof zinc finger protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111431732 PE=...	[more]
A0A5D3BGN5	1.7e-29	59.02	Dof zinc finger protein DOF3.4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3BDV3	1.7e-29	59.02	dof zinc finger protein DOF3.4-like OS=Cucumis melo OX=3656 GN=LOC103488810 PE=4...	[more]
A0A0A0LTJ9	1.2e-27	60.16	Dof-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G039960 PE...	[more]
A0A6J1C7U6	3.5e-27	53.60	dof zinc finger protein DOF5.8-like OS=Momordica charantia OX=3673 GN=LOC1110087...	[more]

BLAST of CmoCh13G011000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924220.1	1.2e-93	100.00	dof zinc finger protein 4-like [Cucurbita moschata]	[more]
KAG6584390.1	6.7e-65	93.08	Dof zinc finger protein, partial [Cucurbita argyrosperma subsp. sororia] >KAG701...	[more]
XP_023520188.1	2.2e-55	86.15	dof zinc finger protein DOF3.1-like [Cucurbita pepo subsp. pepo]	[more]
XP_008445935.1	3.5e-29	59.02	PREDICTED: dof zinc finger protein DOF3.4-like [Cucumis melo] >TYJ98960.1 dof zi...	[more]
XP_004137607.1	2.5e-27	60.16	dof zinc finger protein DOF1.7 [Cucumis sativus]	[more]

BLAST of CmoCh13G011000 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G65590.1	7.3e-25	61.90	Dof-type zinc finger DNA-binding family protein	[more]
AT5G60850.1	8.0e-24	76.92	OBF binding protein 4	[more]
AT3G21270.1	1.0e-23	62.96	DOF zinc finger protein 2	[more]
AT2G28810.1	1.4e-23	50.47	Dof-type zinc finger DNA-binding family protein	[more]
AT2G28810.2	1.4e-23	50.47	Dof-type zinc finger DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003851	Zinc finger, Dof-type	PFAM	PF02701	zf-Dof	coord: 16..71 e-value: 1.5E-30 score: 105.2
IPR003851	Zinc finger, Dof-type	PROSITE	PS01361	ZF_DOF_1	coord: 19..55
IPR003851	Zinc finger, Dof-type	PROSITE	PS50884	ZF_DOF_2	coord: 17..71 score: 27.782326
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 62..97
None	No IPR available	PANTHER	PTHR31992	DOF ZINC FINGER PROTEIN DOF1.4-RELATED	coord: 15..98
None	No IPR available	PANTHER	PTHR31992:SF178	DOF ZINC FINGER PROTEIN DOF5.7	coord: 15..98

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G011000.1	CmoCh13G011000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003677	DNA binding