![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
CmoCh13G010760 (gene) Cucurbita moschata (Rifu) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATCGTACAGCGAAGAGAGAATCCACGCGTCGGCAAATGAGCCACGCAGTCGAATCTCGTTTGCAATTTTCTGTGAACCTGCTGCACCAAATTACTCTTCATCCCTCAACAGTTCTTCGAGCAGGGGCAATGGAAGCTGCAATTTGCGGTCGAGTACCTATTTCACCCTACCATTTCCTCAATCCGACCAGGCCAGGTATTCAGATTACTACGAATTTGTTCCTATTAATTTTCTTCGCTATTCAATTTGTCCGCAGTTCTTTTGGCTGAGGGTTCTTTGTCCTTAATCCTAAATTTGAGGAAAGGTTTTTGAGAAATTTCGGTTTGCTGTTGAACATTTGCATAATTCCTGGATTTATGGAGACAGAAGCTTTTGGCTGCGTAATGGGAAGAATAAAAATTATTAACCGGGAAAATCTGATCATCTGCATGTAGAATGATAATTTTCCTGTTTGTATGAATTTTACTGTTGCATTATGGAGGAAAGCAACAAATGAAACCAAATTAAAGTTCAGAGGTAGATCTGAATCTTTTTGTTTGTGTGTGAACGGTGCAGTAGTATAAAAAGTTCATAACTAAAATCTGTATTTTCTTCTGGAGTTGGATTTGGAGTGGGCAAAACCTAACTAGGATTAGTGGGGTGGGTTACCAGCATTGAGCGGAACTTCCCCTGTTATTAGGGAAAAAAGGCTAAACCCTAGCATCTAGTAAATATTTCATGCTAACATTTCAACATTTCTATCATGGTGAATTAATATCTCAAAATGTAGGGATCAACAAAACTAGCAAGAAAGCTCAATGACCTAGTGGATTATTTAGAATTTGATGATCAAAATGAACAGGAAAGGCTATAGTTTAGCTACCATAACAACAGCGTAACAGTCTACATCGTTTTCTTTTATTTTTATCCACATACTTGCAGAGTCCCGAGACAATTTATAAGTTACAGAATTTACTGGAACCTATTAGAATTGCTACTTAGCAAATGGTTTCCATTAGAAGCAGAGTGTCACAACCTTACTCGGTAGAGAGTAGGTTGTGACCCTCACGTTGCGACAAGCAAAGCGGCGACCCTCTAGTGGTGTCCATTTGGCCACGCGAGGGTCTAGATGAGTGTCATAATGCGACCGAGGAGGACGGTGTATCATCTAACACACCACATAGAGTGGACATTGAAAAGAAGATAAGACATAAACAAGATAAGGGTCCTTGGGTAGGGCCCGTGCCTTAACCTCAAAAGTCGAGGTTCTGAATGGAATTTGGGCATGCGGTTCTAGAGCCAAGTCTGTCCATATGAAATATGAATGCTCACTAAATTTGGTATCAATCCTACACCGGATGGATGCTCCAAAACACCGTTTGACCATTCGTCAAAATGATGTCTATCCGATAAAGATTGGAAATGCCTCAAAATGTACCTGGGAAGCATAGTATCAACTATCTACCACCCATAAGCTCTGTGGCCTAAGCGAGCTACCCTGTGACACATGTGTGTGTCATAGTGAGGGCGAGCGTTCTGAGACGAGTGTCTCAGACAATTTTCTTTGAAATGAGTCTTTTAAGGATAGTACCGGGTGAATGAACCAAATGGGTTTCTCCATACAAAAAGTTCATGATACGAAATAAAGGCTAGGATGTTTAGATCCTCCTTATACACTCTAAAAAAACCTTTAAATTTTTTGTTTGAGATAAATATTAATGACCTATTTTAGACGTTTATATTATTGGATAATCTTGGATGACAAACTGATGTAGCGTCAGTTTGGTCCTTTGCTAGGTCTCACGTTTCCTTGTGGGTTTCGATTACAAAATTTTATTATTATTATTATTTTTAGTAAAGATTAGCTTAGTATTATCTTGTTTGATTGGAGGCCTTTCCTTTCGTTTGCCTTCGTCTTTGTGGGCTCTCTTTTTTGTATGCCCGTGTATTCTTTTTCTTTTTCAATGTAAGTTTGGTGATTCATTAAAAAAAAATTGATGGTGACTGTTAAACTTTACATGGTCCATAAGCTGAGACTAGTCTAGTTTAGAGCCTGGGCTGCATTTAGTTAAGAACTTCTTGTTTATAACACATGGACAAAAAGTGAACACTTGGGAATATATCTATTAATAGATGAGCTCACATGAATCTGAGGCAGCTTTGAGTCGCAATTTTCCTAAGCATTGTACATTTTTCTACCTGCAAAGGTGTGGTGGCGGTTCATTTTATTTTATGTTGGAACTTACCTGACATCTTCATACAATATTACTCATTTATATTTTCCATGTTTGTCATAGGGGATAAATACTATTTTCATAAACCATGTAGAAACCGGAGCATCTTAATGTTATCAGTTGCTGCGCTTGGAAGAGGTGGGGGGTTGTTGGACAAGCCAACAATAGATAAGACAACACCTGGCCGTGAATCCGAGTTTGATGTTAGGTACAAAACAGTTTTCATTTGAATGTATGTCACGTATAAGCAACTAAAGATGTGTATGCATTGGAGAAGGCTTAGCTTCGAACATAATTTTCATCTTCAGGAAATCAAGGAAAATTGCTCCGCCTTATCAAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTCGTGCAAGTTCTGATGAAGGTAATCCCTGGAATGACCGTTGACAATGCAGTCAACATAATGCAGGAGGCACATCACAATGGTATGTCAGTGGTAATTGTCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTACGAGGCAATGGTCTTCAAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGAATAGGAAACATAGACCATGTAATGTACTCTTTTCACCCCTTAGTTATCAGCCATATTAAAATTGCATGCCCTCAACTGCTACAATTTGCAAGCTGCACCTATGTACATATATAGAGATACTTCATAAACAAATAAACTTCAATTTATGAATACCATGTTCACTCTAGTTATGTTATGAGTTGTACACACAAACACATCTTCTTTTTCAGTTGACTTGTTTTTACTTGACTTCCATGTGGTTTGTTGTGCATTCTGATCTTTCTTGTATCTTTCTGGTAATAACTCAATCTCATCGTTAGATATTGTCTTCTTTGAGCTTTTCCTTTCGAGCCTCCCTTTAAGGTATTTAGAATGTGTCTGCTAGGGAGATGTTTTCACACCCTTAATCAGAATGTTTTGTTCCCCTTCACCTTTCTTTTCCTTGGTAGGACGTATTTTGAGTAAATATGTGCAATATTCTTCCCTTGGTCCCATCCCCATGCGTACATTGAGAAGAATTCTAAAATTGCTGTTCTCTCTGTTGCTTGGTATAAAACCCATCGGTACAAGAAATATTCTTTTTATAGATTGAGACGTCTAGAACTGAAACTCTATATTCATCACACAGTTACCAGTTCCTGTCTTTCCAGTTATGGGAGAGAGCTCTGAACTGCTGGATTTTCCAGTTTCCAGTTCCAGTCCTTCAAGAGGGTAAAGAGGGTCAGTAATCACCTCTTAATGAAGAATTTATATATCCATCAATCTCCGATTCACTTCTTTTGAAAGGTTAAAGAAGTCATAGGATTAACTGATCAACTAATCAAGTCCAGCCTTTTCTTTTGGACTCTCTTCGAGGTTTTTAAAACGCTTCGGTTAGGGAGAGGTTTCCATGCCCTTATAAAGAATGTTTCGTTTCCCTTTCCAATTGATGTGAGATTTCACGCAACCATAGCAGTGCTTTCCATATTAGCTTCTTCATCTTGGAGCCATGAGAAAACTAGTTGCTATATTTCGAAGTCTTTTGAATACACCTGTGAATGTAATATTGCAGGACTGAGAAAGAGGAAAGTGGGGTGCACCAACTCTTGCATGAGAGACTCAACTTGGACTGCTCTTGAATTACTGCAGCAGCTGCAGGTAGGTCCAATATCCTACCTATACTGCTATTATTTCTTTCCTTATTTATTATAACATGACAAATTTACTTCGAAAAATGTTTAGGATAATCATGGATTTTTATATAATAGGAGTAGTAGGTGAAGTAAGTAAGGTACCAAAACATTACCATTCTATTTATCATTCCTTTTAAAACTTAGCTTTCTTAAGTATGGTAGGTGAATATTATTAACTATCATCAACCGTATACAATCTTAAACTTATTACTTTGTATCAAGTTATTTATGAAGAGAAATTTACACTCTGAGGGTGAAATAGGAAAGTTGTTCCTTCCCATAACTTTTTTGTGCCTCTGAACTATGTTAGAGAGTTTCATAAATCAAAATATCGTTCTTTTATAAATCTCCCTAAAAGATAAACAATACATCTATAAATTCAGTATAAAATTATATATATATATATATATATTATATATATATAACAAGATCTATGACTTAGTTTAGAAGTAAAAAAGTCAAAACGGCAATATCTGCTAGCAGTGGACTTGAGCTGTTACAAGTGGTATCAGAGTTAGAAATCGGGCGGTGTGTCAGCGAGGACGCTGGGCCTGAAGGGG ATCGTACAGCGAAGAGAGAATCCACGCGTCGGCAAATGAGCCACGCAGTCGAATCTCGTTTGCAATTTTCTGTGAACCTGCTGCACCAAATTACTCTTCATCCCTCAACAGTTCTTCGAGCAGGGGCAATGGAAGCTGCAATTTGCGGTCGAGTACCTATTTCACCCTACCATTTCCTCAATCCGACCAGGCCAGGGGATAAATACTATTTTCATAAACCATGTAGAAACCGGAGCATCTTAATGTTATCAGTTGCTGCGCTTGGAAGAGGTGGGGGGTTGTTGGACAAGCCAACAATAGATAAGACAACACCTGGCCGTGAATCCGAGTTTGATGTTAGGAAATCAAGGAAAATTGCTCCGCCTTATCAAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTCGTGCAAGTTCTGATGAAGGTAATCCCTGGAATGACCGTTGACAATGCAGTCAACATAATGCAGGAGGCACATCACAATGGTATGTCAGTGGTAATTGTCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTACGAGGCAATGGTCTTCAAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGAATAGGAAACATAGACCATGACTGAGAAAGAGGAAAGTGGGGTGCACCAACTCTTGCATGAGAGACTCAACTTGGACTGCTCTTGAATTACTGCAGCAGCTGCAGAAGTAAAAAAGTCAAAACGGCAATATCTGCTAGCAGTGGACTTGAGCTGTTACAAGTGGTATCAGAGTTAGAAATCGGGCGGTGTGTCAGCGAGGACGCTGGGCCTGAAGGGG ATGAGCCACGCAGTCGAATCTCGTTTGCAATTTTCTGTGAACCTGCTGCACCAAATTACTCTTCATCCCTCAACAGTTCTTCGAGCAGGGGCAATGGAAGCTGCAATTTGCGGTCGAGTACCTATTTCACCCTACCATTTCCTCAATCCGACCAGGCCAGGGGATAAATACTATTTTCATAAACCATGTAGAAACCGGAGCATCTTAATGTTATCAGTTGCTGCGCTTGGAAGAGGTGGGGGGTTGTTGGACAAGCCAACAATAGATAAGACAACACCTGGCCGTGAATCCGAGTTTGATGTTAGGAAATCAAGGAAAATTGCTCCGCCTTATCAAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTCGTGCAAGTTCTGATGAAGGTAATCCCTGGAATGACCGTTGACAATGCAGTCAACATAATGCAGGAGGCACATCACAATGGTATGTCAGTGGTAATTGTCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTACGAGGCAATGGTCTTCAAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGA MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFHKPCRNRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGC Homology
BLAST of CmoCh13G010760 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1) HSP 1 Score: 235.3 bits (599), Expect = 5.5e-61 Identity = 117/160 (73.12%), Postives = 135/160 (84.38%), Query Frame = 0
BLAST of CmoCh13G010760 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1) HSP 1 Score: 109.0 bits (271), Expect = 5.9e-23 Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 0
BLAST of CmoCh13G010760 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1) HSP 1 Score: 94.0 bits (232), Expect = 2.0e-18 Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 0
BLAST of CmoCh13G010760 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1) HSP 1 Score: 85.1 bits (209), Expect = 9.1e-16 Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 0
BLAST of CmoCh13G010760 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13 Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 0
BLAST of CmoCh13G010760 vs. ExPASy TrEMBL
Match: A0A6J1EDN1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111431582 PE=3 SV=1) HSP 1 Score: 387.1 bits (993), Expect = 4.2e-104 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
BLAST of CmoCh13G010760 vs. ExPASy TrEMBL
Match: A0A6J1KH35 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111495194 PE=3 SV=1) HSP 1 Score: 368.2 bits (944), Expect = 2.0e-98 Identity = 181/189 (95.77%), Postives = 184/189 (97.35%), Query Frame = 0
BLAST of CmoCh13G010760 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1) HSP 1 Score: 293.9 bits (751), Expect = 4.8e-76 Identity = 140/158 (88.61%), Postives = 151/158 (95.57%), Query Frame = 0
BLAST of CmoCh13G010760 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1) HSP 1 Score: 293.9 bits (751), Expect = 4.8e-76 Identity = 140/158 (88.61%), Postives = 150/158 (94.94%), Query Frame = 0
BLAST of CmoCh13G010760 vs. ExPASy TrEMBL
Match: A0A6J1GS56 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457001 PE=4 SV=1) HSP 1 Score: 292.0 bits (746), Expect = 1.8e-75 Identity = 139/158 (87.97%), Postives = 150/158 (94.94%), Query Frame = 0
BLAST of CmoCh13G010760 vs. NCBI nr
Match: XP_022924035.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita moschata]) HSP 1 Score: 387.1 bits (993), Expect = 8.6e-104 Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0
BLAST of CmoCh13G010760 vs. NCBI nr
Match: KAG6584370.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 385.6 bits (989), Expect = 2.5e-103 Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 0
BLAST of CmoCh13G010760 vs. NCBI nr
Match: KAG7019954.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 382.1 bits (980), Expect = 2.8e-102 Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 0
BLAST of CmoCh13G010760 vs. NCBI nr
Match: XP_023000891.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima]) HSP 1 Score: 368.2 bits (944), Expect = 4.1e-98 Identity = 181/189 (95.77%), Postives = 184/189 (97.35%), Query Frame = 0
BLAST of CmoCh13G010760 vs. NCBI nr
Match: XP_023519501.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 322.0 bits (824), Expect = 3.4e-84 Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0
BLAST of CmoCh13G010760 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein ) HSP 1 Score: 235.3 bits (599), Expect = 3.9e-62 Identity = 117/160 (73.12%), Postives = 135/160 (84.38%), Query Frame = 0
BLAST of CmoCh13G010760 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein ) HSP 1 Score: 167.2 bits (422), Expect = 1.3e-41 Identity = 90/160 (56.25%), Postives = 106/160 (66.25%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|