CmoCh13G010760 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G010760
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	ATP-dependent Clp protease adapter protein ClpS
Location	Cmo_Chr13: 8915049 .. 8919542 (-)
RNA-Seq Expression	CmoCh13G010760
Synteny	CmoCh13G010760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCGTACAGCGAAGAGAGAATCCACGCGTCGGCAAATGAGCCACGCAGTCGAATCTCGTTTGCAATTTTCTGTGAACCTGCTGCACCAAATTACTCTTCATCCCTCAACAGTTCTTCGAGCAGGGGCAATGGAAGCTGCAATTTGCGGTCGAGTACCTATTTCACCCTACCATTTCCTCAATCCGACCAGGCCAGGTATTCAGATTACTACGAATTTGTTCCTATTAATTTTCTTCGCTATTCAATTTGTCCGCAGTTCTTTTGGCTGAGGGTTCTTTGTCCTTAATCCTAAATTTGAGGAAAGGTTTTTGAGAAATTTCGGTTTGCTGTTGAACATTTGCATAATTCCTGGATTTATGGAGACAGAAGCTTTTGGCTGCGTAATGGGAAGAATAAAAATTATTAACCGGGAAAATCTGATCATCTGCATGTAGAATGATAATTTTCCTGTTTGTATGAATTTTACTGTTGCATTATGGAGGAAAGCAACAAATGAAACCAAATTAAAGTTCAGAGGTAGATCTGAATCTTTTTGTTTGTGTGTGAACGGTGCAGTAGTATAAAAAGTTCATAACTAAAATCTGTATTTTCTTCTGGAGTTGGATTTGGAGTGGGCAAAACCTAACTAGGATTAGTGGGGTGGGTTACCAGCATTGAGCGGAACTTCCCCTGTTATTAGGGAAAAAAGGCTAAACCCTAGCATCTAGTAAATATTTCATGCTAACATTTCAACATTTCTATCATGGTGAATTAATATCTCAAAATGTAGGGATCAACAAAACTAGCAAGAAAGCTCAATGACCTAGTGGATTATTTAGAATTTGATGATCAAAATGAACAGGAAAGGCTATAGTTTAGCTACCATAACAACAGCGTAACAGTCTACATCGTTTTCTTTTATTTTTATCCACATACTTGCAGAGTCCCGAGACAATTTATAAGTTACAGAATTTACTGGAACCTATTAGAATTGCTACTTAGCAAATGGTTTCCATTAGAAGCAGAGTGTCACAACCTTACTCGGTAGAGAGTAGGTTGTGACCCTCACGTTGCGACAAGCAAAGCGGCGACCCTCTAGTGGTGTCCATTTGGCCACGCGAGGGTCTAGATGAGTGTCATAATGCGACCGAGGAGGACGGTGTATCATCTAACACACCACATAGAGTGGACATTGAAAAGAAGATAAGACATAAACAAGATAAGGGTCCTTGGGTAGGGCCCGTGCCTTAACCTCAAAAGTCGAGGTTCTGAATGGAATTTGGGCATGCGGTTCTAGAGCCAAGTCTGTCCATATGAAATATGAATGCTCACTAAATTTGGTATCAATCCTACACCGGATGGATGCTCCAAAACACCGTTTGACCATTCGTCAAAATGATGTCTATCCGATAAAGATTGGAAATGCCTCAAAATGTACCTGGGAAGCATAGTATCAACTATCTACCACCCATAAGCTCTGTGGCCTAAGCGAGCTACCCTGTGACACATGTGTGTGTCATAGTGAGGGCGAGCGTTCTGAGACGAGTGTCTCAGACAATTTTCTTTGAAATGAGTCTTTTAAGGATAGTACCGGGTGAATGAACCAAATGGGTTTCTCCATACAAAAAGTTCATGATACGAAATAAAGGCTAGGATGTTTAGATCCTCCTTATACACTCTAAAAAAACCTTTAAATTTTTTGTTTGAGATAAATATTAATGACCTATTTTAGACGTTTATATTATTGGATAATCTTGGATGACAAACTGATGTAGCGTCAGTTTGGTCCTTTGCTAGGTCTCACGTTTCCTTGTGGGTTTCGATTACAAAATTTTATTATTATTATTATTTTTAGTAAAGATTAGCTTAGTATTATCTTGTTTGATTGGAGGCCTTTCCTTTCGTTTGCCTTCGTCTTTGTGGGCTCTCTTTTTTGTATGCCCGTGTATTCTTTTTCTTTTTCAATGTAAGTTTGGTGATTCATTAAAAAAAAATTGATGGTGACTGTTAAACTTTACATGGTCCATAAGCTGAGACTAGTCTAGTTTAGAGCCTGGGCTGCATTTAGTTAAGAACTTCTTGTTTATAACACATGGACAAAAAGTGAACACTTGGGAATATATCTATTAATAGATGAGCTCACATGAATCTGAGGCAGCTTTGAGTCGCAATTTTCCTAAGCATTGTACATTTTTCTACCTGCAAAGGTGTGGTGGCGGTTCATTTTATTTTATGTTGGAACTTACCTGACATCTTCATACAATATTACTCATTTATATTTTCCATGTTTGTCATAGGGGATAAATACTATTTTCATAAACCATGTAGAAACCGGAGCATCTTAATGTTATCAGTTGCTGCGCTTGGAAGAGGTGGGGGGTTGTTGGACAAGCCAACAATAGATAAGACAACACCTGGCCGTGAATCCGAGTTTGATGTTAGGTACAAAACAGTTTTCATTTGAATGTATGTCACGTATAAGCAACTAAAGATGTGTATGCATTGGAGAAGGCTTAGCTTCGAACATAATTTTCATCTTCAGGAAATCAAGGAAAATTGCTCCGCCTTATCAAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTCGTGCAAGTTCTGATGAAGGTAATCCCTGGAATGACCGTTGACAATGCAGTCAACATAATGCAGGAGGCACATCACAATGGTATGTCAGTGGTAATTGTCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTACGAGGCAATGGTCTTCAAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGAATAGGAAACATAGACCATGTAATGTACTCTTTTCACCCCTTAGTTATCAGCCATATTAAAATTGCATGCCCTCAACTGCTACAATTTGCAAGCTGCACCTATGTACATATATAGAGATACTTCATAAACAAATAAACTTCAATTTATGAATACCATGTTCACTCTAGTTATGTTATGAGTTGTACACACAAACACATCTTCTTTTTCAGTTGACTTGTTTTTACTTGACTTCCATGTGGTTTGTTGTGCATTCTGATCTTTCTTGTATCTTTCTGGTAATAACTCAATCTCATCGTTAGATATTGTCTTCTTTGAGCTTTTCCTTTCGAGCCTCCCTTTAAGGTATTTAGAATGTGTCTGCTAGGGAGATGTTTTCACACCCTTAATCAGAATGTTTTGTTCCCCTTCACCTTTCTTTTCCTTGGTAGGACGTATTTTGAGTAAATATGTGCAATATTCTTCCCTTGGTCCCATCCCCATGCGTACATTGAGAAGAATTCTAAAATTGCTGTTCTCTCTGTTGCTTGGTATAAAACCCATCGGTACAAGAAATATTCTTTTTATAGATTGAGACGTCTAGAACTGAAACTCTATATTCATCACACAGTTACCAGTTCCTGTCTTTCCAGTTATGGGAGAGAGCTCTGAACTGCTGGATTTTCCAGTTTCCAGTTCCAGTCCTTCAAGAGGGTAAAGAGGGTCAGTAATCACCTCTTAATGAAGAATTTATATATCCATCAATCTCCGATTCACTTCTTTTGAAAGGTTAAAGAAGTCATAGGATTAACTGATCAACTAATCAAGTCCAGCCTTTTCTTTTGGACTCTCTTCGAGGTTTTTAAAACGCTTCGGTTAGGGAGAGGTTTCCATGCCCTTATAAAGAATGTTTCGTTTCCCTTTCCAATTGATGTGAGATTTCACGCAACCATAGCAGTGCTTTCCATATTAGCTTCTTCATCTTGGAGCCATGAGAAAACTAGTTGCTATATTTCGAAGTCTTTTGAATACACCTGTGAATGTAATATTGCAGGACTGAGAAAGAGGAAAGTGGGGTGCACCAACTCTTGCATGAGAGACTCAACTTGGACTGCTCTTGAATTACTGCAGCAGCTGCAGGTAGGTCCAATATCCTACCTATACTGCTATTATTTCTTTCCTTATTTATTATAACATGACAAATTTACTTCGAAAAATGTTTAGGATAATCATGGATTTTTATATAATAGGAGTAGTAGGTGAAGTAAGTAAGGTACCAAAACATTACCATTCTATTTATCATTCCTTTTAAAACTTAGCTTTCTTAAGTATGGTAGGTGAATATTATTAACTATCATCAACCGTATACAATCTTAAACTTATTACTTTGTATCAAGTTATTTATGAAGAGAAATTTACACTCTGAGGGTGAAATAGGAAAGTTGTTCCTTCCCATAACTTTTTTGTGCCTCTGAACTATGTTAGAGAGTTTCATAAATCAAAATATCGTTCTTTTATAAATCTCCCTAAAAGATAAACAATACATCTATAAATTCAGTATAAAATTATATATATATATATATATATTATATATATATAACAAGATCTATGACTTAGTTTAGAAGTAAAAAAGTCAAAACGGCAATATCTGCTAGCAGTGGACTTGAGCTGTTACAAGTGGTATCAGAGTTAGAAATCGGGCGGTGTGTCAGCGAGGACGCTGGGCCTGAAGGGG

mRNA sequence

ATCGTACAGCGAAGAGAGAATCCACGCGTCGGCAAATGAGCCACGCAGTCGAATCTCGTTTGCAATTTTCTGTGAACCTGCTGCACCAAATTACTCTTCATCCCTCAACAGTTCTTCGAGCAGGGGCAATGGAAGCTGCAATTTGCGGTCGAGTACCTATTTCACCCTACCATTTCCTCAATCCGACCAGGCCAGGGGATAAATACTATTTTCATAAACCATGTAGAAACCGGAGCATCTTAATGTTATCAGTTGCTGCGCTTGGAAGAGGTGGGGGGTTGTTGGACAAGCCAACAATAGATAAGACAACACCTGGCCGTGAATCCGAGTTTGATGTTAGGAAATCAAGGAAAATTGCTCCGCCTTATCAAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTCGTGCAAGTTCTGATGAAGGTAATCCCTGGAATGACCGTTGACAATGCAGTCAACATAATGCAGGAGGCACATCACAATGGTATGTCAGTGGTAATTGTCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTACGAGGCAATGGTCTTCAAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGAATAGGAAACATAGACCATGACTGAGAAAGAGGAAAGTGGGGTGCACCAACTCTTGCATGAGAGACTCAACTTGGACTGCTCTTGAATTACTGCAGCAGCTGCAGAAGTAAAAAAGTCAAAACGGCAATATCTGCTAGCAGTGGACTTGAGCTGTTACAAGTGGTATCAGAGTTAGAAATCGGGCGGTGTGTCAGCGAGGACGCTGGGCCTGAAGGGG

Coding sequence (CDS)

ATGAGCCACGCAGTCGAATCTCGTTTGCAATTTTCTGTGAACCTGCTGCACCAAATTACTCTTCATCCCTCAACAGTTCTTCGAGCAGGGGCAATGGAAGCTGCAATTTGCGGTCGAGTACCTATTTCACCCTACCATTTCCTCAATCCGACCAGGCCAGGGGATAAATACTATTTTCATAAACCATGTAGAAACCGGAGCATCTTAATGTTATCAGTTGCTGCGCTTGGAAGAGGTGGGGGGTTGTTGGACAAGCCAACAATAGATAAGACAACACCTGGCCGTGAATCCGAGTTTGATGTTAGGAAATCAAGGAAAATTGCTCCGCCTTATCAAGTGTTGCTACATAACGACAATTACAACAAGCGGGAATACGTCGTGCAAGTTCTGATGAAGGTAATCCCTGGAATGACCGTTGACAATGCAGTCAACATAATGCAGGAGGCACATCACAATGGTATGTCAGTGGTAATTGTCTGCGCTCAAGTGGACGCAGAAGATCACTGCATGCAGCTACGAGGCAATGGTCTTCAAAGTTCAATCGAGCCTGCAAGTGATGGTTGTTGA

Protein sequence

MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFHKPCRNRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGC

Homology

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BLAST of CmoCh13G010760 vs. ExPASy Swiss-Prot
Match: Q9SX29 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=CPLS1 PE=1 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 5.5e-61
Identity = 117/160 (73.12%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHK-PCRNRSILML--SVAALGRGGGLLDKPTI 91
           ME AICGR+ ++P    N ++ GDK+   K PC NRSILM   + AALG+GGG+LDKP I
Sbjct: 1   METAICGRLALAPSSLFN-SKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 92  DKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQE 151
           +KTTPGRESEFD+RKS+KIAPPY+V+LHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 152 AHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGC 189
           AH NG++VVIVCAQ DAE HCMQLRGNGL SS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of CmoCh13G010760 vs. ExPASy Swiss-Prot
Match: A0A2K3CNL6 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas reinhardtii OX=3055 GN=CLPS1 PE=3 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 5.9e-23
Identity = 59/109 (54.13%), Postives = 78/109 (71.56%), Query Frame = 0


Query: 80  GGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTV 139
           GG++D PT   TT  ++    V +S+K  P Y+VLLHNDNYNKREYVV+VL+KV+  +TV
Sbjct: 61  GGVMDAPT---TT--QQPASGVERSQKRPPIYKVLLHNDNYNKREYVVKVLLKVVEQITV 120

Query: 140 DNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGC 189
           D+AV  MQEAH  G+++V+ C Q +AE +C  LR NGL S+IEP   GC
Sbjct: 121 DDAVTCMQEAHETGVALVVACPQDNAERYCEGLRLNGLTSTIEPG--GC 162

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BLAST of CmoCh13G010760 vs. ExPASy Swiss-Prot
Match: Q31QE7 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=clpS PE=3 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 2.0e-18
Identity = 46/79 (58.23%), Postives = 57/79 (72.15%), Query Frame = 0


Query: 105 RKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVD 164
           RKIAP Y+VLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 165 AEDHCMQLRGNGLQSSIEP 184
           AE +C QL+ +GL SSIEP
Sbjct: 75  AEFYCEQLKSHGLSSSIEP 93

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BLAST of CmoCh13G010760 vs. ExPASy Swiss-Prot
Match: Q5N3U1 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=clpS PE=3 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 9.1e-16
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 105 RKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVD 164
           RKIAP Y+VLLHND++N  EYVV VLM+ +P +T   AV+IM EAH NG  +VI C    
Sbjct: 15  RKIAPRYRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEP 74

Query: 165 AEDHCMQLRGNGLQ 179
           AE +C QL+ +GL+
Sbjct: 75  AEFYCEQLKSHGLE 88

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BLAST of CmoCh13G010760 vs. ExPASy Swiss-Prot
Match: Q3AUR5 (ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9902) OX=316279 GN=clpS PE=3 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.9e-13
Identity = 41/94 (43.62%), Postives = 59/94 (62.77%), Query Frame = 0


Query: 92  TPGRESEFD--VRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEA 151
           +PG  +  D    + RK +P Y+VLLHND  N  EYV+  L +V+P ++  +A+ +M EA
Sbjct: 9   SPGGAAVLDKAPERVRKRSPRYKVLLHNDPVNSMEYVMTTLRQVVPQLSEQDAMAVMLEA 68

Query: 152 HHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEP 184
           H+ G+ +VIVC    AE +C  L+  GL SSIEP
Sbjct: 69  HNTGVGLVIVCDIEPAEFYCETLKSKGLTSSIEP 102

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BLAST of CmoCh13G010760 vs. ExPASy TrEMBL
Match: A0A6J1EDN1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111431582 PE=3 SV=1)

HSP 1 Score: 387.1 bits (993), Expect = 4.2e-104
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60
           MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH
Sbjct: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60

Query: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120
           KPCRNRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY
Sbjct: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120

Query: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180
           NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS
Sbjct: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180

Query: 181 IEPASDGC 189
           IEPASDGC
Sbjct: 181 IEPASDGC 188

[Close]

BLAST of CmoCh13G010760 vs. ExPASy TrEMBL
Match: A0A6J1KH35 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111495194 PE=3 SV=1)

HSP 1 Score: 368.2 bits (944), Expect = 2.0e-98
Identity = 181/189 (95.77%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60
           MSHAVESRLQFSVNLLHQITLHPSTVLR GAMEAAICGRV ISPYHF NPTR GDKYYFH
Sbjct: 1   MSHAVESRLQFSVNLLHQITLHPSTVLREGAMEAAICGRVSISPYHFFNPTRSGDKYYFH 60

Query: 61  KPCRNRSIL-MLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDN 120
           KPCR+RSIL MLSVAALGRGGGLLDKPTI+KTTPGRESEFDVRKSRKIAPPYQVLLHNDN
Sbjct: 61  KPCRHRSILMMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDN 120

Query: 121 YNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQS 180
           YNKREYVVQVLMKVIPGMT+DNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQS
Sbjct: 121 YNKREYVVQVLMKVIPGMTLDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQS 180

Query: 181 SIEPASDGC 189
           SIEPASDGC
Sbjct: 181 SIEPASDGC 189

[Close]

BLAST of CmoCh13G010760 vs. ExPASy TrEMBL
Match: A0A6J1K0P0 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111490541 PE=4 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.8e-76
Identity = 140/158 (88.61%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHKPCRNRSIL-MLSVAALGRGGGLLDKPTIDK 91
           MEAAICGR+P+SPYHF N TRPGDKYYFHK CRNRSIL MLSVA LG+GGGLL+KPT +K
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPTTEK 60

Query: 92  TTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 151
           TTPGRESEF+VRKSRKIAPPY+VLLHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 152 HNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGC 189
           +NGM+VVI+CAQVDAEDHCMQLRGNGL SSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CmoCh13G010760 vs. ExPASy TrEMBL
Match: A0A6J1C511 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111008549 PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 4.8e-76
Identity = 140/158 (88.61%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHKPCRNRS-ILMLSVAALGRGGGLLDKPTIDK 91
           MEAAICGRVP+SP HF N TRPGDKYYFHK CRNRS ++MLSVA LG+GGGLL+KPTI+K
Sbjct: 1   MEAAICGRVPLSPNHFFNQTRPGDKYYFHKQCRNRSTLMMLSVAELGKGGGLLEKPTIEK 60

Query: 92  TTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 151
           TTPGRESEFDVRKSRK APPY+VLLHNDNYNKREYVVQVLMKVIPGMT+DNAVNIMQEAH
Sbjct: 61  TTPGRESEFDVRKSRKTAPPYRVLLHNDNYNKREYVVQVLMKVIPGMTLDNAVNIMQEAH 120

Query: 152 HNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGC 189
           +NGMSVVI+CAQVDAEDHCMQLRGNGL SSIEPASDGC
Sbjct: 121 YNGMSVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CmoCh13G010760 vs. ExPASy TrEMBL
Match: A0A6J1GS56 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111457001 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.8e-75
Identity = 139/158 (87.97%), Postives = 150/158 (94.94%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHKPCRNRSIL-MLSVAALGRGGGLLDKPTIDK 91
           MEAAICGR+P+SPYHF N TRPGDKYYFHK CRNRSIL MLSVA LG+GGGLL+KP  +K
Sbjct: 1   MEAAICGRLPLSPYHFFNSTRPGDKYYFHKQCRNRSILTMLSVAELGKGGGLLEKPATEK 60

Query: 92  TTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 151
           TTPGRESEF+VRKSRKIAPPY+VLLHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQEAH
Sbjct: 61  TTPGRESEFNVRKSRKIAPPYRVLLHNDNHNKREYVVQVLMKVIPGMTVDNAVNIMQEAH 120

Query: 152 HNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGC 189
           +NGM+VVI+CAQVDAEDHCMQLRGNGL SSIEPASDGC
Sbjct: 121 YNGMAVVIICAQVDAEDHCMQLRGNGLLSSIEPASDGC 158

[Close]

BLAST of CmoCh13G010760 vs. NCBI nr
Match: XP_022924035.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita moschata])

HSP 1 Score: 387.1 bits (993), Expect = 8.6e-104
Identity = 188/188 (100.00%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60
           MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH
Sbjct: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60

Query: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120
           KPCRNRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY
Sbjct: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120

Query: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180
           NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS
Sbjct: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180

Query: 181 IEPASDGC 189
           IEPASDGC
Sbjct: 181 IEPASDGC 188

[Close]

BLAST of CmoCh13G010760 vs. NCBI nr
Match: KAG6584370.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 385.6 bits (989), Expect = 2.5e-103
Identity = 187/188 (99.47%), Postives = 188/188 (100.00%), Query Frame = 0


Query: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60
           MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH
Sbjct: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60

Query: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120
           KPCRNRSILMLSVAALGRGGGLLDKPTI+KTTPGRESEFDVRKSRKIAPPYQVLLHNDNY
Sbjct: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120

Query: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180
           NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS
Sbjct: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180

Query: 181 IEPASDGC 189
           IEPASDGC
Sbjct: 181 IEPASDGC 188

[Close]

BLAST of CmoCh13G010760 vs. NCBI nr
Match: KAG7019954.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 382.1 bits (980), Expect = 2.8e-102
Identity = 186/187 (99.47%), Postives = 187/187 (100.00%), Query Frame = 0


Query: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60
           MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH
Sbjct: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60

Query: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120
           KPCRNRSILMLSVAALGRGGGLLDKPTI+KTTPGRESEFDVRKSRKIAPPYQVLLHNDNY
Sbjct: 61  KPCRNRSILMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDNY 120

Query: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180
           NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS
Sbjct: 121 NKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSS 180

Query: 181 IEPASDG 188
           IEPASDG
Sbjct: 181 IEPASDG 187

[Close]

BLAST of CmoCh13G010760 vs. NCBI nr
Match: XP_023000891.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 368.2 bits (944), Expect = 4.1e-98
Identity = 181/189 (95.77%), Postives = 184/189 (97.35%), Query Frame = 0


Query: 1   MSHAVESRLQFSVNLLHQITLHPSTVLRAGAMEAAICGRVPISPYHFLNPTRPGDKYYFH 60
           MSHAVESRLQFSVNLLHQITLHPSTVLR GAMEAAICGRV ISPYHF NPTR GDKYYFH
Sbjct: 1   MSHAVESRLQFSVNLLHQITLHPSTVLREGAMEAAICGRVSISPYHFFNPTRSGDKYYFH 60

Query: 61  KPCRNRSIL-MLSVAALGRGGGLLDKPTIDKTTPGRESEFDVRKSRKIAPPYQVLLHNDN 120
           KPCR+RSIL MLSVAALGRGGGLLDKPTI+KTTPGRESEFDVRKSRKIAPPYQVLLHNDN
Sbjct: 61  KPCRHRSILMMLSVAALGRGGGLLDKPTIEKTTPGRESEFDVRKSRKIAPPYQVLLHNDN 120

Query: 121 YNKREYVVQVLMKVIPGMTVDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQS 180
           YNKREYVVQVLMKVIPGMT+DNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQS
Sbjct: 121 YNKREYVVQVLMKVIPGMTLDNAVNIMQEAHHNGMSVVIVCAQVDAEDHCMQLRGNGLQS 180

Query: 181 SIEPASDGC 189
           SIEPASDGC
Sbjct: 181 SIEPASDGC 189

[Close]

BLAST of CmoCh13G010760 vs. NCBI nr
Match: XP_023519501.1 (ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 322.0 bits (824), Expect = 3.4e-84
Identity = 154/157 (98.09%), Postives = 155/157 (98.73%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHKPCRNRSILMLSVAALGRGGGLLDKPTIDKT 91
           MEAAICGRVPISPYHF N TRPGDKYYFHKPCRNRSILMLSVAALGRGGGLLDKPTI+KT
Sbjct: 1   MEAAICGRVPISPYHFFNSTRPGDKYYFHKPCRNRSILMLSVAALGRGGGLLDKPTIEKT 60

Query: 92  TPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHH 151
           TPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHH
Sbjct: 61  TPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQEAHH 120

Query: 152 NGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGC 189
           NGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGC
Sbjct: 121 NGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGC 157

[Close]

BLAST of CmoCh13G010760 vs. TAIR 10
Match: AT1G68660.1 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 235.3 bits (599), Expect = 3.9e-62
Identity = 117/160 (73.12%), Postives = 135/160 (84.38%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHK-PCRNRSILML--SVAALGRGGGLLDKPTI 91
           ME AICGR+ ++P    N ++ GDK+   K PC NRSILM   + AALG+GGG+LDKP I
Sbjct: 1   METAICGRLALAPSSLFN-SKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 92  DKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQE 151
           +KTTPGRESEFD+RKS+KIAPPY+V+LHNDN+NKREYVVQVLMKVIPGMTVDNAVNIMQE
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQE 120

Query: 152 AHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGC 189
           AH NG++VVIVCAQ DAE HCMQLRGNGL SS+EP   GC
Sbjct: 121 AHINGLAVVIVCAQADAEQHCMQLRGNGLLSSVEPDGGGC 159

[Close]

BLAST of CmoCh13G010760 vs. TAIR 10
Match: AT1G68660.2 (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein )

HSP 1 Score: 167.2 bits (422), Expect = 1.3e-41
Identity = 90/160 (56.25%), Postives = 106/160 (66.25%), Query Frame = 0


Query: 32  MEAAICGRVPISPYHFLNPTRPGDKYYFHK-PCRNRSILML--SVAALGRGGGLLDKPTI 91
           ME AICGR+ ++P    N ++ GDK+   K PC NRSILM   + AALG+GGG+LDKP I
Sbjct: 1   METAICGRLALAPSSLFN-SKSGDKHLVSKGPCVNRSILMTLSTSAALGKGGGVLDKPII 60

Query: 92  DKTTPGRESEFDVRKSRKIAPPYQVLLHNDNYNKREYVVQVLMKVIPGMTVDNAVNIMQE 151
           +KTTPGRESEFD+RKS+KIAPPY+V+LHNDN+NKREYVVQVLMK                
Sbjct: 61  EKTTPGRESEFDLRKSKKIAPPYRVILHNDNFNKREYVVQVLMK---------------- 120

Query: 152 AHHNGMSVVIVCAQVDAEDHCMQLRGNGLQSSIEPASDGC 189
                          DAE HCMQLRGNGL SS+EP   GC
Sbjct: 121 --------------ADAEQHCMQLRGNGLLSSVEPDGGGC 129

The following BLAST results are available for this feature:

BLAST of CmoCh13G010760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SX29	5.5e-61	73.13	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Arabidopsis t...	[more]
A0A2K3CNL6	5.9e-23	54.13	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Chlamydomonas...	[more]
Q31QE7	2.0e-18	58.23	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus elongatus (stra...	[more]
Q5N3U1	9.1e-16	55.41	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain ATC...	[more]
Q3AUR5	1.9e-13	43.62	ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus sp. (strain CC9...	[more]

BLAST of CmoCh13G010760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1EDN1	4.2e-104	100.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1KH35	2.0e-98	95.77	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1K0P0	4.8e-76	88.61	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like OS=Cucurbit...	[more]
A0A6J1C511	4.8e-76	88.61	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like isoform X1 ...	[more]
A0A6J1GS56	1.8e-75	87.97	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic OS=Cucurbita mos...	[more]

BLAST of CmoCh13G010760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022924035.1	8.6e-104	100.00	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]
KAG6584370.1	2.5e-103	99.47	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic, partial [Cucurb...	[more]
KAG7019954.1	2.8e-102	99.47	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic [Cucurbita argyr...	[more]
XP_023000891.1	4.1e-98	95.77	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]
XP_023519501.1	3.4e-84	98.09	ATP-dependent Clp protease adapter protein CLPS1, chloroplastic-like [Cucurbita ...	[more]

BLAST of CmoCh13G010760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68660.1	3.9e-62	73.13	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]
AT1G68660.2	1.3e-41	56.25	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003769	Adaptor protein ClpS, core	PFAM	PF02617	ClpS	coord: 108..174 e-value: 1.7E-18 score: 66.2
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	3.30.1390.10		coord: 106..183 e-value: 6.5E-21 score: 76.0
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	SUPERFAMILY	54736	ClpS-like	coord: 105..183
None	No IPR available	PANTHER	PTHR33473:SF14	ATP-DEPENDENT CLP PROTEASE ADAPTOR PROTEIN CLPS	coord: 32..188
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	PANTHER	PTHR33473	ATP-DEPENDENT CLP PROTEASE ADAPTER PROTEIN CLPS1, CHLOROPLASTIC	coord: 32..188
IPR022935	ATP-dependent Clp protease adaptor protein ClpS	HAMAP	MF_00302	ClpS	coord: 91..185 score: 14.987559

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G010760.1	CmoCh13G010760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030163	protein catabolic process
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008233	peptidase activity