CmoCh13G010470 (gene) Cucurbita moschata (Rifu) v1

Overview


Name	CmoCh13G010470
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu) v1)
Description	Unknown protein
Location	Cmo_Chr13: 8767160 .. 8767384 (-)
RNA-Seq Expression	CmoCh13G010470
Synteny	CmoCh13G010470

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAGGCTAATGAGAGAATTTGGCAGTCAAAATGGCAGCTTTGGCCTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGTATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAACAAAAGACAGGAATTCCACGGCCGACGTTGAGCTTTACGGTGCCGGTTGCGCAGCCGGCTGCGGCGCTGGATGTGGTGCTTGA

mRNA sequence

ATGGCGAGGCTAATGAGAGAATTTGGCAGTCAAAATGGCAGCTTTGGCCTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGTATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAACAAAAGACAGGAATTCCACGGCCGACGTTGAGCTTTACGGTGCCGGTTGCGCAGCCGGCTGCGGCGCTGGATGTGGTGCTTGA

Coding sequence (CDS)

ATGGCGAGGCTAATGAGAGAATTTGGCAGTCAAAATGGCAGCTTTGGCCTCGCCGGTGACATTTATTTGCTGTTTTGGGCGGCTCTGTTTACACTCTGTATAATCTCCACCATAATTTTCTCTTGCTCCGACGGCATGTCAACAAAAGACAGGAATTCCACGGCCGACGTTGAGCTTTACGGTGCCGGTTGCGCAGCCGGCTGCGGCGCTGGATGTGGTGCTTGA

Protein sequence

MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELYGAGCAAGCGAGCGA

Homology

[Close]

BLAST of CmoCh13G010470 vs. ExPASy TrEMBL
Match: A0A0A0LQU7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 7.5e-25
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1  MARLMREFGSQNGSFGLA-GDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
          MARLMRE  SQNGSFGLA G+ Y LFW ALFTLCIIST+IFSCSDGMS KDRNST DVEL
Sbjct: 1  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMS-KDRNSTVDVEL 60

Query: 61 YGAGCAAGCGAGCGA 75
          YG GCAAGCGAGCGA
Sbjct: 61 YGGGCAAGCGAGCGA 74

[Close]

BLAST of CmoCh13G010470 vs. ExPASy TrEMBL
Match: M5WF59 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G224700 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.0e-14
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R+ RE GS +G  G+A   +L+FWAAL +LC++S I+FSC+DG+S+K++N+  D +LY
Sbjct: 1  MVRVWREIGSVDG--GVATANWLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTKLY 60

Query: 61 GAGCAAGCGAGCGA 75
          G GCAA CGA CGA
Sbjct: 61 GGGCAAECGAACGA 72

[Close]

BLAST of CmoCh13G010470 vs. ExPASy TrEMBL
Match: A0A6J5UX91 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS34361 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 6.0e-14
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R+ RE GS +G  G+A   +L+FWAAL +LC++S I+FSC+DG+S+K +N+  D ELY
Sbjct: 1  MLRVWREIGSVDG--GVATANWLVFWAALVSLCLVSVIVFSCADGVSSKGKNTAGDTELY 60

Query: 61 GAGCAAGCGAGCGA 75
          G GCAA CGA CGA
Sbjct: 61 GGGCAAECGAACGA 72

[Close]

BLAST of CmoCh13G010470 vs. ExPASy TrEMBL
Match: A0A6P3ZT85 (uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC107418606 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 3.9e-13
Identity = 46/74 (62.16%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M RL R+  S +GS G AG  +++ W AL  +CIIS IIFSC+DG+S K++ STAD ELY
Sbjct: 1  MVRLWRDLASVHGS-GSAG--FVVLWLALLGVCIISAIIFSCADGVS-KEKTSTADTELY 60

Query: 61 GAGCAAGCGAGCGA 75
          G GCAAGCGAGCGA
Sbjct: 61 GGGCAAGCGAGCGA 70

[Close]

BLAST of CmoCh13G010470 vs. ExPASy TrEMBL
Match: A0A803R005 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 4.3e-12
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 0


Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAA-LFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
          M RL RE  + +G  G     +L+F    L TLCI+STIIFSC+DG+S K++ S  D EL
Sbjct: 1  MVRLWREVANVDGGVGTGSGAFLIFLLGFLVTLCILSTIIFSCADGVS-KEKTSQGDTEL 60

Query: 61 YGAGCAAGCGAGCGA 75
          YG GCAAGCGAGCGA
Sbjct: 61 YGGGCAAGCGAGCGA 74

[Close]

BLAST of CmoCh13G010470 vs. NCBI nr
Match: KAG6584341.1 (hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 74/74 (100.00%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY
Sbjct: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60

Query: 61 GAGCAAGCGAGCGA 75
          GAGCAAGCGAGCGA
Sbjct: 61 GAGCAAGCGAGCGA 74

[Close]

BLAST of CmoCh13G010470 vs. NCBI nr
Match: KAE8652552.1 (hypothetical protein Csa_013579 [Cucumis sativus])

HSP 1 Score: 122.5 bits (306), Expect = 1.6e-24
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 0


Query: 1   MARLMREFGSQNGSFGLA-GDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVEL 60
           MARLMRE  SQNGSFGLA G+ Y LFW ALFTLCIIST+IFSCSDGMS KDRNST DVEL
Sbjct: 29  MARLMREISSQNGSFGLAGGETYWLFWVALFTLCIISTLIFSCSDGMS-KDRNSTVDVEL 88

Query: 61  YGAGCAAGCGAGCGA 75
           YG GCAAGCGAGCGA
Sbjct: 89  YGGGCAAGCGAGCGA 102

[Close]

BLAST of CmoCh13G010470 vs. NCBI nr
Match: KAG6572949.1 (hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 103.6 bits (257), Expect = 7.5e-19
Identity = 55/70 (78.57%), Postives = 60/70 (85.71%), Query Frame = 0


Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          MARL+ E GS +GSFGL+GDI  LF AALFTLCIIS I FSCSDG+S K+RNSTADVELY
Sbjct: 1  MARLIGEIGSVDGSFGLSGDISCLFLAALFTLCIISLITFSCSDGIS-KERNSTADVELY 60

Query: 61 GAGCAAGCGA 71
          G GCAAGCGA
Sbjct: 61 GGGCAAGCGA 69

[Close]

BLAST of CmoCh13G010470 vs. NCBI nr
Match: ONI09219.1 (hypothetical protein PRUPE_5G224700 [Prunus persica])

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-13
Identity = 41/74 (55.41%), Postives = 57/74 (77.03%), Query Frame = 0


Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R+ RE GS +G  G+A   +L+FWAAL +LC++S I+FSC+DG+S+K++N+  D +LY
Sbjct: 1  MVRVWREIGSVDG--GVATANWLVFWAALVSLCLVSAIVFSCADGVSSKEKNTAGDTKLY 60

Query: 61 GAGCAAGCGAGCGA 75
          G GCAA CGA CGA
Sbjct: 61 GGGCAAECGAACGA 72

[Close]

BLAST of CmoCh13G010470 vs. NCBI nr
Match: CAB4281319.1 (unnamed protein product [Prunus armeniaca] >CAB4311731.1 unnamed protein product [Prunus armeniaca])

HSP 1 Score: 86.3 bits (212), Expect = 1.2e-13
Identity = 42/74 (56.76%), Postives = 56/74 (75.68%), Query Frame = 0


Query: 1  MARLMREFGSQNGSFGLAGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELY 60
          M R+ RE GS +G  G+A   +L+FWAAL +LC++S I+FSC+DG+S+K +N+  D ELY
Sbjct: 1  MLRVWREIGSVDG--GVATANWLVFWAALVSLCLVSVIVFSCADGVSSKGKNTAGDTELY 60

Query: 61 GAGCAAGCGAGCGA 75
          G GCAA CGA CGA
Sbjct: 61 GGGCAAECGAACGA 72

[Close]

BLAST of CmoCh13G010470 vs. TAIR 10
Match: AT1G68238.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 47.8 bits (112), Expect = 4.5e-06
Identity = 24/55 (43.64%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 19 GDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELYGAGCAAGCGAGCG 74
          G++ L  WAA+    +I+ +IFSCSD  S    N     ++ G+ CAAGCG GCG
Sbjct: 14 GEVSLYIWAAVVAFSVIAAVIFSCSDRASKPHTND----DVNGSSCAAGCGGGCG 64

[Close]

BLAST of CmoCh13G010470 vs. TAIR 10
Match: AT3G18250.1 (Putative membrane lipoprotein )

HSP 1 Score: 42.0 bits (97), Expect = 2.5e-04
Identity = 23/57 (40.35%), Postives = 35/57 (61.40%), Query Frame = 0


Query: 18 AGDIYLLFWAALFTLCIISTIIFSCSDGMSTKDRNSTADVELYGAGC-AAGCGAGCG 74
          A  ++ + + A+   CI+S ++FSC+DG+S  D  +T+     G GC  AGCG GCG
Sbjct: 21 ASYLFHVVFLAVIGCCILSALLFSCADGVS--DNRATSGTSTGGGGCGGAGCGGGCG 75

The following BLAST results are available for this feature:

BLAST of CmoCh13G010470 vs.


Match Name	E-value	Identity	Description

BLAST of CmoCh13G010470 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LQU7	7.5e-25	85.33	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G042580 PE=4 SV=1	[more]
M5WF59	6.0e-14	55.41	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_5G224700 PE=4 SV=1	[more]
A0A6J5UX91	6.0e-14	56.76	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS34361 PE=4 S...	[more]
A0A6P3ZT85	3.9e-13	62.16	uncharacterized protein LOC107418606 OS=Ziziphus jujuba OX=326968 GN=LOC10741860...	[more]
A0A803R005	4.3e-12	57.33	Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1	[more]

BLAST of CmoCh13G010470 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6584341.1	1.5e-32	100.00	hypothetical protein SDJN03_20273, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8652552.1	1.6e-24	85.33	hypothetical protein Csa_013579 [Cucumis sativus]	[more]
KAG6572949.1	7.5e-19	78.57	hypothetical protein SDJN03_26836, partial [Cucurbita argyrosperma subsp. sorori...	[more]
ONI09219.1	1.2e-13	55.41	hypothetical protein PRUPE_5G224700 [Prunus persica]	[more]
CAB4281319.1	1.2e-13	56.76	unnamed protein product [Prunus armeniaca] >CAB4311731.1 unnamed protein product...	[more]

BLAST of CmoCh13G010470 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G68238.1	4.5e-06	43.64	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G18250.1	2.5e-04	40.35	Putative membrane lipoprotein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata (Rifu) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37199	TRANSMEMBRANE PROTEIN	coord: 1..74

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G010470.1	CmoCh13G010470.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane