CmoCh13G009810 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G009810
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionPentatricopeptide repeat-containing protein
LocationCmo_Chr13: 8398462 .. 8400108 (-)
RNA-Seq ExpressionCmoCh13G009810
SyntenyCmoCh13G009810
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGTTCATCAAGGTAATAAAAGCAATACAGCTTACATCTTTTTGTGGTGTTCTTTGTTCTGTTTGGTTTGAAAATTAGAAGGTGGGTTCATTGTTTTTGGAGCTTAATCCTTATCCTTTTCGACCTTGATGATAACGAAAAGTGGGATATGGGTATGCCGTATAGGTTCAAAAGTTTTGATCTTTATCCTTTTTATGTTGATTGAATTTGGTCTATTTTAACATGAATTCGATGTGCTCTGCATTAAGTGGAGTCATTCCGATAAGGATGACCTGTACAAATGGTGGATTTGGGATCTGGGTGGTTACAGGATCTGGGTCGTTACAAGTAGTATCAGATATTGAGGAATTGTCCATACGTAAAATCATCTGGGTCGTTACAGATAGTATCAGAGATCTGGGTTGTTACAGATCTGGGTTGTTACAAAGACACATCCTCACAAATAGTATCAGATCTGGGAGTATCAGAGATCTGGGTATCAGAGATCTGGGTTGTTACAAAGACACATCCTCTGAGTTGTTACAAATAGTATCAGAGCCAGACAACATGTGTCAGCGAAGACAACATGCCAGTACACATCCTCTGGGTTGTTACAAATAGTATCAGAACCAGACAACATGTGTCAGCCTTCTCGCTGACCTCCACGGTGTGCCAGTAAGGATGCTGGGCCTCAAAGGGGTTGTTACAAATAGTATCAGAGCCAGACAACATGTGTCAGCCTTCTCGCTGACCTCCGCGGTGTGCCAGTAAGGATGCTGGGCCTCAAAGAAGGTAGATTTGAAGACGTCCCACAATTGGAGGAAGGAAAGTGCAACGGACTCCGAAGGGGTGGATTGTGATGTTCCACATTGGTTGGGGAAAAGAACAATTGTAACCTCCCGGAGAGGTTGAGGAGAACAAACCACAAAAGTGTAGAAATCTTTACCTAGCAGTCGAGGGGAAGCTCGAAAAAAAAAAGTCCAAGAGAACAATATCTGCTAGCGGTAGATTTGGGTCGTTGGTCGTTACAATAATCACACGTCAACATCTTAATCTAATATATGTGTCATGCTTTTCAATCGATTTTAATTGATTCCGAACTCTTGATCATAATCTAATAGACATGTAATGCTTAGAAGTTGACTCCCAACTTCAAATGTCTTTGGTAAATTCTATGTTTTATAATTAATTCAAAATATAAGAAAAATAGTTTCTTTAGCAAATTTGAAGCAAAAATGGATGGAAATTATAATCATTTTAAAGTTAACTTGTTATAAATTTCGTGGGGGTAGTAATAAAAGTTTCAATTTTCTTTTTTTTTTTTTCCCTATATAAAAGGTATACAATTGGGCTGAAGGTTGTTTGTTTGGAATCAGATCTAGCTATGAAGAGCCTTGACGCAATACGAAGGGGAACGACATACTTCTGTTTATTGTTATACGATTGCTTGCAGGTTCTTTCGCAATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTCATTCTTTATCTATGGAACTTGATGATTAGAAGCTCTGTCAATGGCGGGTTCTTCGCCCAAGCTCTTGAAGCCTACTCGTTTATGTGCCACTTCGGAATTCATGGTAACAATTTCACATTTTCTCTCCTCCTCAAGCCTTTGCGCAAATCTTGCTTCGATCGGTGA

mRNA sequence

ATGTTGTTCATCAAGGTATACAATTGGGCTGAAGGTTCTTTCGCAATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTCATTCTTTATCTATGGAACTTGATGATTAGAAGCTCTGTCAATGGCGGGTTCTTCGCCCAAGCTCTTGAAGCCTACTCGTTTATGTGCCACTTCGGAATTCATGGTAACAATTTCACATTTTCTCTCCTCCTCAAGCCTTTGCGCAAATCTTGCTTCGATCGGTGA

Coding sequence (CDS)

ATGTTGTTCATCAAGGTATACAATTGGGCTGAAGGTTCTTTCGCAATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTCATTCTTTATCTATGGAACTTGATGATTAGAAGCTCTGTCAATGGCGGGTTCTTCGCCCAAGCTCTTGAAGCCTACTCGTTTATGTGCCACTTCGGAATTCATGGTAACAATTTCACATTTTCTCTCCTCCTCAAGCCTTTGCGCAAATCTTGCTTCGATCGGTGA

Protein sequence

MLFIKVYNWAEGSFAMQIHRFSPSSSFILYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLKPLRKSCFDR
Homology
[Close]
BLAST of CmoCh13G009810 vs. ExPASy TrEMBL
Match: A0A6J1C6R4 (pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charantia OX=3673 GN=LOC111008767 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 2.2e-17
Identity = 49/60 (81.67%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 16 MQIHRFSPSSSFI---LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK 73
          MQ HRFSPSS FI   LYLWNLMIRSSVNGGFFA+ LE YSFM H GIHGNNFTF LLLK
Sbjct: 1  MQAHRFSPSSGFIKRPLYLWNLMIRSSVNGGFFAETLETYSFMRHSGIHGNNFTFPLLLK 60

[Close]
BLAST of CmoCh13G009810 vs. ExPASy TrEMBL
Match: A0A0A0LT91 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043310 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 4.1e-16
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 16 MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLL 73
          MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ+LE YSFM H GIHGNNFTF LLL
Sbjct: 1  MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQSLETYSFMRHSGIHGNNFTFPLLL 60

[Close]
BLAST of CmoCh13G009810 vs. ExPASy TrEMBL
Match: A0A5D3BIG9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G002870 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.5e-15
Identity = 47/61 (77.05%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 16 MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLL 73
          MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ LE YSFM   GIHGNNFTF LLL
Sbjct: 1  MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQTLETYSFMRQSGIHGNNFTFPLLL 60

[Close]
BLAST of CmoCh13G009810 vs. ExPASy TrEMBL
Match: A0A1S3BDP0 (pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488899 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 4.5e-15
Identity = 47/61 (77.05%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 16 MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLL 73
          MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ LE YSFM   GIHGNNFTF LLL
Sbjct: 1  MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQTLETYSFMRQSGIHGNNFTFPLLL 60

[Close]
BLAST of CmoCh13G009810 vs. ExPASy TrEMBL
Match: A0A371HKH0 (Pentatricopeptide repeat-containing protein DOT4, chloroplastic (Fragment) OS=Mucuna pruriens OX=157652 GN=DOT4 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 2.4e-08
Identity = 30/44 (68.18%), Postives = 33/44 (75.00%), Query Frame = 0 

Query: 29 LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK 73
          LYLWNLMIR S N GFF+Q L  YS M H G+HGNN T+ LLLK
Sbjct: 15 LYLWNLMIRDSTNNGFFSQTLNIYSSMAHSGVHGNNLTYPLLLK 58

[Close]
BLAST of CmoCh13G009810 vs. NCBI nr
Match: KAG6584277.1 (hypothetical protein SDJN03_20209, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 98.6 bits (244), Expect = 2.6e-17
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 0 

Query: 16 MQIHRFSPSSSFILYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIH 62
          MQIHRFSPSSSFILYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIH
Sbjct: 1  MQIHRFSPSSSFILYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIH 46

[Close]
BLAST of CmoCh13G009810 vs. NCBI nr
Match: XP_022137264.1 (pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia])

HSP 1 Score: 97.8 bits (242), Expect = 4.5e-17
Identity = 49/60 (81.67%), Postives = 50/60 (83.33%), Query Frame = 0 

Query: 16 MQIHRFSPSSSFI---LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK 73
          MQ HRFSPSS FI   LYLWNLMIRSSVNGGFFA+ LE YSFM H GIHGNNFTF LLLK
Sbjct: 1  MQAHRFSPSSGFIKRPLYLWNLMIRSSVNGGFFAETLETYSFMRHSGIHGNNFTFPLLLK 60

[Close]
BLAST of CmoCh13G009810 vs. NCBI nr
Match: XP_004137641.1 (pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 8.5e-16
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 0 

Query: 16 MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLL 73
          MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ+LE YSFM H GIHGNNFTF LLL
Sbjct: 1  MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQSLETYSFMRHSGIHGNNFTFPLLL 60

[Close]
BLAST of CmoCh13G009810 vs. NCBI nr
Match: XP_038893873.1 (LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 90.9 bits (224), Expect = 5.5e-15
Identity = 46/61 (75.41%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 16 MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLL 73
          MQIHRFSPSS+ I    LYLWNL IR SVNGGFF + LE YSFM H GIHGNNFTF LLL
Sbjct: 1  MQIHRFSPSSTLIIKRPLYLWNLTIRISVNGGFFTEXLETYSFMRHSGIHGNNFTFPLLL 60

[Close]
BLAST of CmoCh13G009810 vs. NCBI nr
Match: TYJ99083.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 90.1 bits (222), Expect = 9.3e-15
Identity = 47/61 (77.05%), Postives = 48/61 (78.69%), Query Frame = 0 

Query: 16 MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLL 73
          MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ LE YSFM   GIHGNNFTF LLL
Sbjct: 1  MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQTLETYSFMRQSGIHGNNFTFPLLL 60

The following BLAST results are available for this feature:
BLAST of CmoCh13G009810 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G009810 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1C6R42.2e-1781.67pentatricopeptide repeat-containing protein At2g13600-like OS=Momordica charanti... [more]
A0A0A0LT914.1e-1678.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G043310 PE=4 SV=1[more]
A0A5D3BIG94.5e-1577.05Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BDP04.5e-1577.05pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like OS=Cuc... [more]
A0A371HKH02.4e-0868.18Pentatricopeptide repeat-containing protein DOT4, chloroplastic (Fragment) OS=Mu... [more]
BLAST of CmoCh13G009810 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6584277.12.6e-17100.00hypothetical protein SDJN03_20209, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022137264.14.5e-1781.67pentatricopeptide repeat-containing protein At2g13600-like [Momordica charantia][more]
XP_004137641.18.5e-1678.69pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus][more]
XP_038893873.15.5e-1575.41LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloropla... [more]
TYJ99083.19.3e-1577.05pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa][more]
BLAST of CmoCh13G009810 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G009810.1CmoCh13G009810.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009451 RNA modification
cellular_component GO:0043231 intracellular membrane-bounded organelle
molecular_function GO:0003723 RNA binding