CmoCh13G009760 (gene) Cucurbita moschata (Rifu) v1

Overview
NameCmoCh13G009760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu) v1)
DescriptionUnknown protein
LocationCmo_Chr13: 8386333 .. 8387223 (+)
RNA-Seq ExpressionCmoCh13G009760
SyntenyCmoCh13G009760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAGAACGGTTTGGTTGCAAACGTGTTGGTTGGGTGAGGGTAGTGTAAGCACGCTCAGCAGTGCCCGCCATTGCCTTGCCGCTGCGTCCCCTCTACACGCGGCGACAAGGAAAAGTCTGTAACTTAAATTTAGGATATTTACAAAACACCCCCCAAAGAAACACTAATTTGCAATTTTAGCCCTTCTGGTTTCTTCCCCCCTTCCATGTTTATTAAATATTATAACATAATTTCCTCCAAAACCTTATTTTATTAAATTCCCTCGTCTTTATCTCTAACCATTTTATTTATTTATTTATTTATTTATTGGCATTTCCAATTCCAAACCATCGGTTTCCTTCACCCAATTACTTCAATTAATTCCCAATAAAACTGATTTAAAAAATGCAATGAATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAGTTCCCATTAAAACCTTTTTCTCTCTGAAACAAATTCTCAGTCAAAACCTCTGCTCGAATTTCAGCGTTATCCTCAACTCTTCGTCTTCTTCATCTCTCGATTCGACCTTTTGCTTTCTTCCTCCGTCTTCTTCTTCCACCATTTCGGAAAACCACGACTCTACTGAACCAGAGATTCGCCGGTGGTTTGATTGCTAATTAAGAGTATGTTTTCATCTTCTTCTCTCTCTTTTCCTTTCCTTTTATCTTCATTGCTCGTTCTCTGTAATCGATTCTTCCACTGTGCCGCTGAATTTGCTTTTCCTTTTTTATTTCTCTCAATTTTCAATTCCTTCTGTTCTTTCCTTTTTCACCAGCCGGATTTTCCGATCAGGTGCCTCATTCTTCTTTATATTCAACCAATTCGTCAATCATCCACCACCGGAAACGCACATTCCTCTGAACGAAACGAAGACCTAG

mRNA sequence

ATGAACAGAACGGTTTGGTTGCAAACGTGTTGGTTGGGTGAGGGTAGTGTAAGCACGCTCAGCAGTGCCCGCCATTGCCTTGCCGCTGCGTCCCCTCTACACGCGGCGACAAGGAAAAGTCTTCAAAACCTCTGCTCGAATTTCAGCGTTATCCTCAACTCTTCGTCTTCTTCATCTCTCGATTCGACCTTTTGCTTTCTTCCTCCGTCTTCTTCTTCCACCATTTCGGAAAACCACGACTCTACTGAACCAGAGATTCGCCGGTGCCGGATTTTCCGATCAGGTGCCTCATTCTTCTTTATATTCAACCAATTCGTCAATCATCCACCACCGGAAACGCACATTCCTCTGAACGAAACGAAGACCTAG

Coding sequence (CDS)

ATGAACAGAACGGTTTGGTTGCAAACGTGTTGGTTGGGTGAGGGTAGTGTAAGCACGCTCAGCAGTGCCCGCCATTGCCTTGCCGCTGCGTCCCCTCTACACGCGGCGACAAGGAAAAGTCTTCAAAACCTCTGCTCGAATTTCAGCGTTATCCTCAACTCTTCGTCTTCTTCATCTCTCGATTCGACCTTTTGCTTTCTTCCTCCGTCTTCTTCTTCCACCATTTCGGAAAACCACGACTCTACTGAACCAGAGATTCGCCGGTGCCGGATTTTCCGATCAGGTGCCTCATTCTTCTTTATATTCAACCAATTCGTCAATCATCCACCACCGGAAACGCACATTCCTCTGAACGAAACGAAGACCTAG

Protein sequence

MNRTVWLQTCWLGEGSVSTLSSARHCLAAASPLHAATRKSLQNLCSNFSVILNSSSSSSLDSTFCFLPPSSSSTISENHDSTEPEIRRCRIFRSGASFFFIFNQFVNHPPPETHIPLNETKT
Homology
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BLAST of CmoCh13G009760 vs. NCBI nr
Match: KAG7019871.1 (hypothetical protein SDJN02_18836, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 67.4 bits (163), Expect = 9.8e-08
Identity = 29/31 (93.55%), Postives = 29/31 (93.55%), Query Frame = 0 

Query: 92  FRSGASFFFIFNQFVNHPPPETHIPLNETKT 123
           F  GASFFFIFNQFVNHPPPETHIPLNETKT
Sbjct: 53  FAGGASFFFIFNQFVNHPPPETHIPLNETKT 83

The following BLAST results are available for this feature:
BLAST of CmoCh13G009760 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G009760 vs.
Match NameE-valueIdentityDescription
BLAST of CmoCh13G009760 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7019871.19.8e-0893.55hypothetical protein SDJN02_18836, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of CmoCh13G009760 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G009760.1CmoCh13G009760.1mRNA